HEADER HYDROLASE 03-JUN-20 6Z9B TITLE HUMAN ECTO-5'-NUCLEOTIDASE (CD73) IN COMPLEX WITH AOPCP DERIVATIVE TITLE 2 A830 (COMPOUND 16 IN PUBLICATION) IN THE CLOSED FORM (CRYSTAL FORM TITLE 3 III) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5'-NT,ECTO-5'-NUCLEOTIDASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CD73 CONSTRUCT 4.0 FOR E. COLI EXPRESSION AND COMPND 8 REFOLDING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5E, NT5, NTE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC ENZYME, NUCLEOTIDE ANALOG, INHIBITOR, ARCUS BIOSCIENCES, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.STRATER,E.SCALETTI REVDAT 5 16-OCT-24 6Z9B 1 REMARK REVDAT 4 24-JAN-24 6Z9B 1 REMARK REVDAT 3 04-NOV-20 6Z9B 1 JRNL REVDAT 2 29-JUL-20 6Z9B 1 JRNL REVDAT 1 22-JUL-20 6Z9B 0 JRNL AUTH K.V.LAWSON,J.KALISIAK,E.A.LINDSEY,E.T.NEWCOMB,M.R.LELETI, JRNL AUTH 2 L.DEBIEN,B.R.ROSEN,D.H.MILES,E.U.SHARIF,J.L.JEFFREY, JRNL AUTH 3 J.B.L.TAN,A.CHEN,S.ZHAO,G.XU,L.FU,L.JIN,T.W.PARK,W.BERRY, JRNL AUTH 4 S.MOSCHUTZ,E.SCALETTI,N.STRATER,N.P.WALKER,S.W.YOUNG, JRNL AUTH 5 M.J.WALTERS,U.SCHINDLER,J.P.POWERS JRNL TITL DISCOVERY OF AB680: A POTENT AND SELECTIVE INHIBITOR OF JRNL TITL 2 CD73. JRNL REF J.MED.CHEM. V. 63 11448 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32614585 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00525 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1625 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.41 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 650 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2434 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 618 REMARK 3 BIN R VALUE (WORKING SET) : 0.2446 REMARK 3 BIN FREE R VALUE : 0.2175 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 32 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.53200 REMARK 3 B22 (A**2) : -13.96480 REMARK 3 B33 (A**2) : 11.43280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.260 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.213 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.245 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.210 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4198 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5693 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1464 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 730 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4198 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 536 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4960 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.48 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.13 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|1 - A|333 A|601 - A|603} REMARK 3 ORIGIN FOR THE GROUP (A): -20.9740 21.1955 -16.2391 REMARK 3 T TENSOR REMARK 3 T11: -0.1280 T22: 0.1221 REMARK 3 T33: -0.2224 T12: 0.0106 REMARK 3 T13: 0.0015 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.0949 L22: 0.8672 REMARK 3 L33: 2.0652 L12: -0.2847 REMARK 3 L13: 0.0944 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.1817 S13: 0.0147 REMARK 3 S21: 0.0332 S22: -0.0614 S23: 0.0050 REMARK 3 S31: -0.2127 S32: 0.0380 S33: 0.0231 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|334 - A|549} REMARK 3 ORIGIN FOR THE GROUP (A): -17.9552 18.9849 -48.4863 REMARK 3 T TENSOR REMARK 3 T11: -0.2956 T22: 0.2298 REMARK 3 T33: -0.3040 T12: 0.0017 REMARK 3 T13: 0.0264 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.8500 L22: 0.8165 REMARK 3 L33: 5.9305 L12: 0.0537 REMARK 3 L13: 0.4372 L23: 0.8588 REMARK 3 S TENSOR REMARK 3 S11: -0.1372 S12: 0.1284 S13: 0.0095 REMARK 3 S21: 0.0359 S22: 0.2412 S23: -0.0980 REMARK 3 S31: -0.1219 S32: 0.5442 S33: -0.1040 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 48.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.425 REMARK 200 R MERGE (I) : 0.22300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.04 REMARK 200 R MERGE FOR SHELL (I) : 0.83600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: PDBID 4H2I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CD73 AT 7 MG/ML WAS INCUBATED ON ICE REMARK 280 FOR ONE HOUR WITH 1MM OF THE INHIBITOR AND 0.1 MM ZNCL2. 1 UL OF REMARK 280 PROTEIN WAS MIXED WITH 1 UL OF 11-14% PEG6000 AND 100 MM SODIUM REMARK 280 CITRATE PH 5.4-5.6. FOR CRYOPROTECTION GLYCEROL WAS ADDED TO A REMARK 280 FINAL CONCENTRATION OF 15 % TO THE RESERVOIR BUFFER., PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.58500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.58500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.62000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.22500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.62000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.22500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.58500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.62000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.22500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.58500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.62000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.22500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.24000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -117.58500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 377 REMARK 465 GLU A 378 REMARK 465 MET A 379 REMARK 465 LEU A 550 REMARK 465 GLU A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 52 -68.62 -121.26 REMARK 500 GLN A 88 127.31 75.44 REMARK 500 LEU A 131 -61.93 -98.77 REMARK 500 SER A 141 113.66 -176.29 REMARK 500 SER A 155 125.43 -39.33 REMARK 500 SER A 178 120.73 -38.16 REMARK 500 SER A 185 -153.28 -134.87 REMARK 500 HIS A 243 -38.57 73.26 REMARK 500 SER A 255 -156.28 -131.06 REMARK 500 TYR A 281 -122.05 57.88 REMARK 500 ASN A 306 147.78 -179.92 REMARK 500 ASN A 382 -41.10 71.71 REMARK 500 ASP A 467 41.60 -145.05 REMARK 500 CYS A 479 145.91 -170.66 REMARK 500 LYS A 536 -57.24 70.96 REMARK 500 TYR A 539 53.75 -152.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 985 DISTANCE = 8.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD2 REMARK 620 2 HIS A 38 NE2 126.5 REMARK 620 3 ASP A 85 OD2 85.6 106.8 REMARK 620 4 QCQ A 604 O3B 132.9 99.8 88.9 REMARK 620 5 HOH A 714 O 88.2 95.6 156.0 78.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 ASN A 117 OD1 117.9 REMARK 620 3 HIS A 220 NE2 85.5 94.4 REMARK 620 4 HIS A 243 ND1 149.6 91.8 99.1 REMARK 620 5 QCQ A 604 O2B 84.1 95.8 168.0 87.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 213 O REMARK 620 2 ASP A 237 OD1 139.5 REMARK 620 3 ASP A 237 OD2 89.1 50.7 REMARK 620 4 GLY A 298 O 95.7 93.4 96.2 REMARK 620 5 HOH A 790 O 87.8 83.8 83.8 176.5 REMARK 620 6 HOH A 912 O 101.8 116.2 162.2 96.5 82.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QCQ A 604 DBREF 6Z9B A 27 549 UNP P21589 5NTD_HUMAN 27 549 SEQADV 6Z9B MET A 26 UNP P21589 INITIATING METHIONINE SEQADV 6Z9B ASP A 53 UNP P21589 ASN 53 ENGINEERED MUTATION SEQADV 6Z9B ASP A 311 UNP P21589 ASN 311 ENGINEERED MUTATION SEQADV 6Z9B ASP A 333 UNP P21589 ASN 333 ENGINEERED MUTATION SEQADV 6Z9B ALA A 376 UNP P21589 THR 376 ENGINEERED MUTATION SEQADV 6Z9B ASP A 403 UNP P21589 ASN 403 ENGINEERED MUTATION SEQADV 6Z9B LEU A 550 UNP P21589 EXPRESSION TAG SEQADV 6Z9B GLU A 551 UNP P21589 EXPRESSION TAG SEQADV 6Z9B HIS A 552 UNP P21589 EXPRESSION TAG SEQADV 6Z9B HIS A 553 UNP P21589 EXPRESSION TAG SEQADV 6Z9B HIS A 554 UNP P21589 EXPRESSION TAG SEQADV 6Z9B HIS A 555 UNP P21589 EXPRESSION TAG SEQADV 6Z9B HIS A 556 UNP P21589 EXPRESSION TAG SEQADV 6Z9B HIS A 557 UNP P21589 EXPRESSION TAG SEQRES 1 A 532 MET TRP GLU LEU THR ILE LEU HIS THR ASN ASP VAL HIS SEQRES 2 A 532 SER ARG LEU GLU GLN THR SER GLU ASP SER SER LYS CYS SEQRES 3 A 532 VAL ASP ALA SER ARG CYS MET GLY GLY VAL ALA ARG LEU SEQRES 4 A 532 PHE THR LYS VAL GLN GLN ILE ARG ARG ALA GLU PRO ASN SEQRES 5 A 532 VAL LEU LEU LEU ASP ALA GLY ASP GLN TYR GLN GLY THR SEQRES 6 A 532 ILE TRP PHE THR VAL TYR LYS GLY ALA GLU VAL ALA HIS SEQRES 7 A 532 PHE MET ASN ALA LEU ARG TYR ASP ALA MET ALA LEU GLY SEQRES 8 A 532 ASN HIS GLU PHE ASP ASN GLY VAL GLU GLY LEU ILE GLU SEQRES 9 A 532 PRO LEU LEU LYS GLU ALA LYS PHE PRO ILE LEU SER ALA SEQRES 10 A 532 ASN ILE LYS ALA LYS GLY PRO LEU ALA SER GLN ILE SER SEQRES 11 A 532 GLY LEU TYR LEU PRO TYR LYS VAL LEU PRO VAL GLY ASP SEQRES 12 A 532 GLU VAL VAL GLY ILE VAL GLY TYR THR SER LYS GLU THR SEQRES 13 A 532 PRO PHE LEU SER ASN PRO GLY THR ASN LEU VAL PHE GLU SEQRES 14 A 532 ASP GLU ILE THR ALA LEU GLN PRO GLU VAL ASP LYS LEU SEQRES 15 A 532 LYS THR LEU ASN VAL ASN LYS ILE ILE ALA LEU GLY HIS SEQRES 16 A 532 SER GLY PHE GLU MET ASP LYS LEU ILE ALA GLN LYS VAL SEQRES 17 A 532 ARG GLY VAL ASP VAL VAL VAL GLY GLY HIS SER ASN THR SEQRES 18 A 532 PHE LEU TYR THR GLY ASN PRO PRO SER LYS GLU VAL PRO SEQRES 19 A 532 ALA GLY LYS TYR PRO PHE ILE VAL THR SER ASP ASP GLY SEQRES 20 A 532 ARG LYS VAL PRO VAL VAL GLN ALA TYR ALA PHE GLY LYS SEQRES 21 A 532 TYR LEU GLY TYR LEU LYS ILE GLU PHE ASP GLU ARG GLY SEQRES 22 A 532 ASN VAL ILE SER SER HIS GLY ASN PRO ILE LEU LEU ASP SEQRES 23 A 532 SER SER ILE PRO GLU ASP PRO SER ILE LYS ALA ASP ILE SEQRES 24 A 532 ASN LYS TRP ARG ILE LYS LEU ASP ASP TYR SER THR GLN SEQRES 25 A 532 GLU LEU GLY LYS THR ILE VAL TYR LEU ASP GLY SER SER SEQRES 26 A 532 GLN SER CYS ARG PHE ARG GLU CYS ASN MET GLY ASN LEU SEQRES 27 A 532 ILE CYS ASP ALA MET ILE ASN ASN ASN LEU ARG HIS ALA SEQRES 28 A 532 ASP GLU MET PHE TRP ASN HIS VAL SER MET CYS ILE LEU SEQRES 29 A 532 ASN GLY GLY GLY ILE ARG SER PRO ILE ASP GLU ARG ASN SEQRES 30 A 532 ASP GLY THR ILE THR TRP GLU ASN LEU ALA ALA VAL LEU SEQRES 31 A 532 PRO PHE GLY GLY THR PHE ASP LEU VAL GLN LEU LYS GLY SEQRES 32 A 532 SER THR LEU LYS LYS ALA PHE GLU HIS SER VAL HIS ARG SEQRES 33 A 532 TYR GLY GLN SER THR GLY GLU PHE LEU GLN VAL GLY GLY SEQRES 34 A 532 ILE HIS VAL VAL TYR ASP LEU SER ARG LYS PRO GLY ASP SEQRES 35 A 532 ARG VAL VAL LYS LEU ASP VAL LEU CYS THR LYS CYS ARG SEQRES 36 A 532 VAL PRO SER TYR ASP PRO LEU LYS MET ASP GLU VAL TYR SEQRES 37 A 532 LYS VAL ILE LEU PRO ASN PHE LEU ALA ASN GLY GLY ASP SEQRES 38 A 532 GLY PHE GLN MET ILE LYS ASP GLU LEU LEU ARG HIS ASP SEQRES 39 A 532 SER GLY ASP GLN ASP ILE ASN VAL VAL SER THR TYR ILE SEQRES 40 A 532 SER LYS MET LYS VAL ILE TYR PRO ALA VAL GLU GLY ARG SEQRES 41 A 532 ILE LYS PHE SER LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 601 1 HET ZN A 602 1 HET CA A 603 1 HET QCQ A 604 35 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM QCQ [[(2~{R},3~{R},4~{S},5~{R})-5-[2-CHLORANYL-6- HETNAM 2 QCQ [(PHENYLMETHYL)AMINO]PURIN-9-YL]-4-FLUORANYL-3- HETNAM 3 QCQ OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 4 QCQ PHOSPHORYL]METHYLPHOSPHONIC ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA CA 2+ FORMUL 5 QCQ C18 H21 CL F N5 O8 P2 FORMUL 6 HOH *285(H2 O) HELIX 1 AA1 ASP A 53 CYS A 57 5 5 HELIX 2 AA2 GLY A 60 GLU A 75 1 16 HELIX 3 AA3 THR A 90 LYS A 97 1 8 HELIX 4 AA4 GLY A 98 ARG A 109 1 12 HELIX 5 AA5 GLY A 116 ASP A 121 5 6 HELIX 6 AA6 VAL A 124 GLU A 129 1 6 HELIX 7 AA7 PRO A 149 SER A 155 1 7 HELIX 8 AA8 GLU A 180 SER A 185 1 6 HELIX 9 AA9 ASP A 195 LEU A 210 1 16 HELIX 10 AB1 GLY A 222 VAL A 233 1 12 HELIX 11 AB2 ASP A 317 ILE A 329 1 13 HELIX 12 AB3 LYS A 330 SER A 335 5 6 HELIX 13 AB4 SER A 349 ARG A 354 1 6 HELIX 14 AB5 CYS A 358 ARG A 374 1 17 HELIX 15 AB6 GLY A 392 ILE A 394 5 3 HELIX 16 AB7 TRP A 408 LEU A 415 1 8 HELIX 17 AB8 GLY A 428 VAL A 439 1 12 HELIX 18 AB9 ASN A 499 ASN A 503 1 5 HELIX 19 AC1 GLY A 504 GLY A 507 5 4 HELIX 20 AC2 PHE A 508 LEU A 515 1 8 HELIX 21 AC3 GLN A 523 LYS A 536 1 14 SHEET 1 AA1 6 ILE A 139 LEU A 140 0 SHEET 2 AA1 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 AA1 6 ASN A 77 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 AA1 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 AA1 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 AA1 6 VAL A 300 GLY A 305 -1 O HIS A 304 N LYS A 291 SHEET 1 AA2 6 ILE A 139 LEU A 140 0 SHEET 2 AA2 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 AA2 6 ASN A 77 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 AA2 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 AA2 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 AA2 6 ILE A 308 LEU A 309 -1 O ILE A 308 N LEU A 287 SHEET 1 AA3 2 ILE A 144 ALA A 146 0 SHEET 2 AA3 2 LEU A 191 PHE A 193 -1 O VAL A 192 N LYS A 145 SHEET 1 AA4 6 TYR A 161 VAL A 166 0 SHEET 2 AA4 6 GLU A 169 THR A 177 -1 O GLU A 169 N VAL A 166 SHEET 3 AA4 6 ILE A 215 HIS A 220 1 O LEU A 218 N VAL A 174 SHEET 4 AA4 6 VAL A 238 VAL A 240 1 O VAL A 238 N ALA A 217 SHEET 5 AA4 6 LYS A 274 VAL A 278 1 O VAL A 278 N VAL A 239 SHEET 6 AA4 6 PHE A 265 THR A 268 -1 N VAL A 267 O VAL A 275 SHEET 1 AA5 3 THR A 405 THR A 407 0 SHEET 2 AA5 3 GLU A 338 THR A 342 -1 N LEU A 339 O ILE A 406 SHEET 3 AA5 3 VAL A 537 ILE A 538 1 O ILE A 538 N LYS A 341 SHEET 1 AA6 5 LEU A 450 GLY A 453 0 SHEET 2 AA6 5 MET A 386 ASN A 390 -1 N LEU A 389 O GLN A 451 SHEET 3 AA6 5 VAL A 492 PRO A 498 1 O ILE A 496 N MET A 386 SHEET 4 AA6 5 PHE A 421 LYS A 427 -1 N LEU A 426 O TYR A 493 SHEET 5 AA6 5 ARG A 517 ASP A 519 -1 O ASP A 519 N LEU A 423 SHEET 1 AA7 4 TYR A 484 PRO A 486 0 SHEET 2 AA7 4 VAL A 469 LEU A 475 -1 N VAL A 474 O ASP A 485 SHEET 3 AA7 4 ILE A 455 TYR A 459 -1 N HIS A 456 O ASP A 473 SHEET 4 AA7 4 ILE A 546 PHE A 548 1 O LYS A 547 N TYR A 459 SSBOND 1 CYS A 51 CYS A 57 1555 1555 2.03 SSBOND 2 CYS A 353 CYS A 358 1555 1555 2.05 SSBOND 3 CYS A 365 CYS A 387 1555 1555 2.03 SSBOND 4 CYS A 476 CYS A 479 1555 1555 2.03 LINK OD2 ASP A 36 ZN ZN A 601 1555 1555 2.12 LINK NE2 HIS A 38 ZN ZN A 601 1555 1555 2.05 LINK OD2 ASP A 85 ZN ZN A 601 1555 1555 2.35 LINK OD2 ASP A 85 ZN ZN A 602 1555 1555 2.14 LINK OD1 ASN A 117 ZN ZN A 602 1555 1555 2.15 LINK O ASN A 213 CA CA A 603 1555 1555 2.30 LINK NE2 HIS A 220 ZN ZN A 602 1555 1555 2.13 LINK OD1 ASP A 237 CA CA A 603 1555 1555 2.63 LINK OD2 ASP A 237 CA CA A 603 1555 1555 2.54 LINK ND1 HIS A 243 ZN ZN A 602 1555 1555 2.23 LINK O GLY A 298 CA CA A 603 1555 1555 2.37 LINK ZN ZN A 601 O3B QCQ A 604 1555 1555 2.14 LINK ZN ZN A 601 O HOH A 714 1555 1555 2.14 LINK ZN ZN A 602 O2B QCQ A 604 1555 1555 1.93 LINK CA CA A 603 O HOH A 790 1555 1555 2.52 LINK CA CA A 603 O HOH A 912 1555 1555 2.80 CISPEP 1 TYR A 263 PRO A 264 0 -2.09 SITE 1 AC1 5 ASP A 36 HIS A 38 ASP A 85 QCQ A 604 SITE 2 AC1 5 HOH A 714 SITE 1 AC2 5 ASP A 85 ASN A 117 HIS A 220 HIS A 243 SITE 2 AC2 5 QCQ A 604 SITE 1 AC3 5 ASN A 213 ASP A 237 GLY A 298 HOH A 790 SITE 2 AC3 5 HOH A 912 SITE 1 AC4 24 HIS A 38 ASP A 85 ASN A 117 HIS A 118 SITE 2 AC4 24 ASP A 121 LEU A 184 SER A 185 HIS A 243 SITE 3 AC4 24 ASN A 245 ARG A 354 ASN A 390 GLY A 392 SITE 4 AC4 24 ARG A 395 PHE A 417 GLY A 447 PHE A 500 SITE 5 AC4 24 ASP A 506 ZN A 601 ZN A 602 HOH A 714 SITE 6 AC4 24 HOH A 718 HOH A 738 HOH A 780 HOH A 800 CRYST1 53.240 96.450 235.170 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004252 0.00000