HEADER HYDROLASE 03-JUN-20 6Z9B
TITLE HUMAN ECTO-5'-NUCLEOTIDASE (CD73) IN COMPLEX WITH AOPCP DERIVATIVE
TITLE 2 A830 (COMPOUND 16 IN PUBLICATION) IN THE CLOSED FORM (CRYSTAL FORM
TITLE 3 III)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: 5'-NUCLEOTIDASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: 5'-NT,ECTO-5'-NUCLEOTIDASE;
COMPND 5 EC: 3.1.3.5;
COMPND 6 ENGINEERED: YES;
COMPND 7 OTHER_DETAILS: CD73 CONSTRUCT 4.0 FOR E. COLI EXPRESSION AND
COMPND 8 REFOLDING
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NT5E, NT5, NTE;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ZINC ENZYME, NUCLEOTIDE ANALOG, INHIBITOR, ARCUS BIOSCIENCES,
KEYWDS 2 HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR N.STRATER,E.SCALETTI
REVDAT 5 16-OCT-24 6Z9B 1 REMARK
REVDAT 4 24-JAN-24 6Z9B 1 REMARK
REVDAT 3 04-NOV-20 6Z9B 1 JRNL
REVDAT 2 29-JUL-20 6Z9B 1 JRNL
REVDAT 1 22-JUL-20 6Z9B 0
JRNL AUTH K.V.LAWSON,J.KALISIAK,E.A.LINDSEY,E.T.NEWCOMB,M.R.LELETI,
JRNL AUTH 2 L.DEBIEN,B.R.ROSEN,D.H.MILES,E.U.SHARIF,J.L.JEFFREY,
JRNL AUTH 3 J.B.L.TAN,A.CHEN,S.ZHAO,G.XU,L.FU,L.JIN,T.W.PARK,W.BERRY,
JRNL AUTH 4 S.MOSCHUTZ,E.SCALETTI,N.STRATER,N.P.WALKER,S.W.YOUNG,
JRNL AUTH 5 M.J.WALTERS,U.SCHINDLER,J.P.POWERS
JRNL TITL DISCOVERY OF AB680: A POTENT AND SELECTIVE INHIBITOR OF
JRNL TITL 2 CD73.
JRNL REF J.MED.CHEM. V. 63 11448 2020
JRNL REFN ISSN 0022-2623
JRNL PMID 32614585
JRNL DOI 10.1021/ACS.JMEDCHEM.0C00525
REMARK 2
REMARK 2 RESOLUTION. 2.17 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 3 NUMBER OF REFLECTIONS : 32496
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.210
REMARK 3 R VALUE (WORKING SET) : 0.208
REMARK 3 FREE R VALUE : 0.263
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1625
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 50
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.18
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.41
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 650
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2434
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 618
REMARK 3 BIN R VALUE (WORKING SET) : 0.2446
REMARK 3 BIN FREE R VALUE : 0.2175
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.92
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 32
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4064
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 38
REMARK 3 SOLVENT ATOMS : 285
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 32.78
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.75
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.53200
REMARK 3 B22 (A**2) : -13.96480
REMARK 3 B33 (A**2) : 11.43280
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.330
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.260
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.213
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.245
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.210
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4198 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 5693 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1464 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 730 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 4198 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 536 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 4960 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.16
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.48
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.13
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: {A|1 - A|333 A|601 - A|603}
REMARK 3 ORIGIN FOR THE GROUP (A): -20.9740 21.1955 -16.2391
REMARK 3 T TENSOR
REMARK 3 T11: -0.1280 T22: 0.1221
REMARK 3 T33: -0.2224 T12: 0.0106
REMARK 3 T13: 0.0015 T23: -0.0266
REMARK 3 L TENSOR
REMARK 3 L11: 1.0949 L22: 0.8672
REMARK 3 L33: 2.0652 L12: -0.2847
REMARK 3 L13: 0.0944 L23: 0.0030
REMARK 3 S TENSOR
REMARK 3 S11: 0.0383 S12: 0.1817 S13: 0.0147
REMARK 3 S21: 0.0332 S22: -0.0614 S23: 0.0050
REMARK 3 S31: -0.2127 S32: 0.0380 S33: 0.0231
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: {A|334 - A|549}
REMARK 3 ORIGIN FOR THE GROUP (A): -17.9552 18.9849 -48.4863
REMARK 3 T TENSOR
REMARK 3 T11: -0.2956 T22: 0.2298
REMARK 3 T33: -0.3040 T12: 0.0017
REMARK 3 T13: 0.0264 T23: -0.0151
REMARK 3 L TENSOR
REMARK 3 L11: 0.8500 L22: 0.8165
REMARK 3 L33: 5.9305 L12: 0.0537
REMARK 3 L13: 0.4372 L23: 0.8588
REMARK 3 S TENSOR
REMARK 3 S11: -0.1372 S12: 0.1284 S13: 0.0095
REMARK 3 S21: 0.0359 S22: 0.2412 S23: -0.0980
REMARK 3 S31: -0.1219 S32: 0.5442 S33: -0.1040
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6Z9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-20.
REMARK 100 THE DEPOSITION ID IS D_1292109150.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-JUN-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32496
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170
REMARK 200 RESOLUTION RANGE LOW (A) : 48.230
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 200 DATA REDUNDANCY : 6.425
REMARK 200 R MERGE (I) : 0.22300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6100
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4
REMARK 200 DATA REDUNDANCY IN SHELL : 6.04
REMARK 200 R MERGE FOR SHELL (I) : 0.83600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: BUSTER
REMARK 200 STARTING MODEL: PDBID 4H2I
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 51.71
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: CD73 AT 7 MG/ML WAS INCUBATED ON ICE
REMARK 280 FOR ONE HOUR WITH 1MM OF THE INHIBITOR AND 0.1 MM ZNCL2. 1 UL OF
REMARK 280 PROTEIN WAS MIXED WITH 1 UL OF 11-14% PEG6000 AND 100 MM SODIUM
REMARK 280 CITRATE PH 5.4-5.6. FOR CRYOPROTECTION GLYCEROL WAS ADDED TO A
REMARK 280 FINAL CONCENTRATION OF 15 % TO THE RESERVOIR BUFFER., PH 5.5,
REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.58500
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.58500
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.62000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.22500
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.62000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.22500
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.58500
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.62000
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.22500
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.58500
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.62000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.22500
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.24000
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -117.58500
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A 377
REMARK 465 GLU A 378
REMARK 465 MET A 379
REMARK 465 LEU A 550
REMARK 465 GLU A 551
REMARK 465 HIS A 552
REMARK 465 HIS A 553
REMARK 465 HIS A 554
REMARK 465 HIS A 555
REMARK 465 HIS A 556
REMARK 465 HIS A 557
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL A 52 -68.62 -121.26
REMARK 500 GLN A 88 127.31 75.44
REMARK 500 LEU A 131 -61.93 -98.77
REMARK 500 SER A 141 113.66 -176.29
REMARK 500 SER A 155 125.43 -39.33
REMARK 500 SER A 178 120.73 -38.16
REMARK 500 SER A 185 -153.28 -134.87
REMARK 500 HIS A 243 -38.57 73.26
REMARK 500 SER A 255 -156.28 -131.06
REMARK 500 TYR A 281 -122.05 57.88
REMARK 500 ASN A 306 147.78 -179.92
REMARK 500 ASN A 382 -41.10 71.71
REMARK 500 ASP A 467 41.60 -145.05
REMARK 500 CYS A 479 145.91 -170.66
REMARK 500 LYS A 536 -57.24 70.96
REMARK 500 TYR A 539 53.75 -152.71
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 985 DISTANCE = 8.00 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 601 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 36 OD2
REMARK 620 2 HIS A 38 NE2 126.5
REMARK 620 3 ASP A 85 OD2 85.6 106.8
REMARK 620 4 QCQ A 604 O3B 132.9 99.8 88.9
REMARK 620 5 HOH A 714 O 88.2 95.6 156.0 78.5
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 602 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 85 OD2
REMARK 620 2 ASN A 117 OD1 117.9
REMARK 620 3 HIS A 220 NE2 85.5 94.4
REMARK 620 4 HIS A 243 ND1 149.6 91.8 99.1
REMARK 620 5 QCQ A 604 O2B 84.1 95.8 168.0 87.0
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 603 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN A 213 O
REMARK 620 2 ASP A 237 OD1 139.5
REMARK 620 3 ASP A 237 OD2 89.1 50.7
REMARK 620 4 GLY A 298 O 95.7 93.4 96.2
REMARK 620 5 HOH A 790 O 87.8 83.8 83.8 176.5
REMARK 620 6 HOH A 912 O 101.8 116.2 162.2 96.5 82.7
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 603
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue QCQ A 604
DBREF 6Z9B A 27 549 UNP P21589 5NTD_HUMAN 27 549
SEQADV 6Z9B MET A 26 UNP P21589 INITIATING METHIONINE
SEQADV 6Z9B ASP A 53 UNP P21589 ASN 53 ENGINEERED MUTATION
SEQADV 6Z9B ASP A 311 UNP P21589 ASN 311 ENGINEERED MUTATION
SEQADV 6Z9B ASP A 333 UNP P21589 ASN 333 ENGINEERED MUTATION
SEQADV 6Z9B ALA A 376 UNP P21589 THR 376 ENGINEERED MUTATION
SEQADV 6Z9B ASP A 403 UNP P21589 ASN 403 ENGINEERED MUTATION
SEQADV 6Z9B LEU A 550 UNP P21589 EXPRESSION TAG
SEQADV 6Z9B GLU A 551 UNP P21589 EXPRESSION TAG
SEQADV 6Z9B HIS A 552 UNP P21589 EXPRESSION TAG
SEQADV 6Z9B HIS A 553 UNP P21589 EXPRESSION TAG
SEQADV 6Z9B HIS A 554 UNP P21589 EXPRESSION TAG
SEQADV 6Z9B HIS A 555 UNP P21589 EXPRESSION TAG
SEQADV 6Z9B HIS A 556 UNP P21589 EXPRESSION TAG
SEQADV 6Z9B HIS A 557 UNP P21589 EXPRESSION TAG
SEQRES 1 A 532 MET TRP GLU LEU THR ILE LEU HIS THR ASN ASP VAL HIS
SEQRES 2 A 532 SER ARG LEU GLU GLN THR SER GLU ASP SER SER LYS CYS
SEQRES 3 A 532 VAL ASP ALA SER ARG CYS MET GLY GLY VAL ALA ARG LEU
SEQRES 4 A 532 PHE THR LYS VAL GLN GLN ILE ARG ARG ALA GLU PRO ASN
SEQRES 5 A 532 VAL LEU LEU LEU ASP ALA GLY ASP GLN TYR GLN GLY THR
SEQRES 6 A 532 ILE TRP PHE THR VAL TYR LYS GLY ALA GLU VAL ALA HIS
SEQRES 7 A 532 PHE MET ASN ALA LEU ARG TYR ASP ALA MET ALA LEU GLY
SEQRES 8 A 532 ASN HIS GLU PHE ASP ASN GLY VAL GLU GLY LEU ILE GLU
SEQRES 9 A 532 PRO LEU LEU LYS GLU ALA LYS PHE PRO ILE LEU SER ALA
SEQRES 10 A 532 ASN ILE LYS ALA LYS GLY PRO LEU ALA SER GLN ILE SER
SEQRES 11 A 532 GLY LEU TYR LEU PRO TYR LYS VAL LEU PRO VAL GLY ASP
SEQRES 12 A 532 GLU VAL VAL GLY ILE VAL GLY TYR THR SER LYS GLU THR
SEQRES 13 A 532 PRO PHE LEU SER ASN PRO GLY THR ASN LEU VAL PHE GLU
SEQRES 14 A 532 ASP GLU ILE THR ALA LEU GLN PRO GLU VAL ASP LYS LEU
SEQRES 15 A 532 LYS THR LEU ASN VAL ASN LYS ILE ILE ALA LEU GLY HIS
SEQRES 16 A 532 SER GLY PHE GLU MET ASP LYS LEU ILE ALA GLN LYS VAL
SEQRES 17 A 532 ARG GLY VAL ASP VAL VAL VAL GLY GLY HIS SER ASN THR
SEQRES 18 A 532 PHE LEU TYR THR GLY ASN PRO PRO SER LYS GLU VAL PRO
SEQRES 19 A 532 ALA GLY LYS TYR PRO PHE ILE VAL THR SER ASP ASP GLY
SEQRES 20 A 532 ARG LYS VAL PRO VAL VAL GLN ALA TYR ALA PHE GLY LYS
SEQRES 21 A 532 TYR LEU GLY TYR LEU LYS ILE GLU PHE ASP GLU ARG GLY
SEQRES 22 A 532 ASN VAL ILE SER SER HIS GLY ASN PRO ILE LEU LEU ASP
SEQRES 23 A 532 SER SER ILE PRO GLU ASP PRO SER ILE LYS ALA ASP ILE
SEQRES 24 A 532 ASN LYS TRP ARG ILE LYS LEU ASP ASP TYR SER THR GLN
SEQRES 25 A 532 GLU LEU GLY LYS THR ILE VAL TYR LEU ASP GLY SER SER
SEQRES 26 A 532 GLN SER CYS ARG PHE ARG GLU CYS ASN MET GLY ASN LEU
SEQRES 27 A 532 ILE CYS ASP ALA MET ILE ASN ASN ASN LEU ARG HIS ALA
SEQRES 28 A 532 ASP GLU MET PHE TRP ASN HIS VAL SER MET CYS ILE LEU
SEQRES 29 A 532 ASN GLY GLY GLY ILE ARG SER PRO ILE ASP GLU ARG ASN
SEQRES 30 A 532 ASP GLY THR ILE THR TRP GLU ASN LEU ALA ALA VAL LEU
SEQRES 31 A 532 PRO PHE GLY GLY THR PHE ASP LEU VAL GLN LEU LYS GLY
SEQRES 32 A 532 SER THR LEU LYS LYS ALA PHE GLU HIS SER VAL HIS ARG
SEQRES 33 A 532 TYR GLY GLN SER THR GLY GLU PHE LEU GLN VAL GLY GLY
SEQRES 34 A 532 ILE HIS VAL VAL TYR ASP LEU SER ARG LYS PRO GLY ASP
SEQRES 35 A 532 ARG VAL VAL LYS LEU ASP VAL LEU CYS THR LYS CYS ARG
SEQRES 36 A 532 VAL PRO SER TYR ASP PRO LEU LYS MET ASP GLU VAL TYR
SEQRES 37 A 532 LYS VAL ILE LEU PRO ASN PHE LEU ALA ASN GLY GLY ASP
SEQRES 38 A 532 GLY PHE GLN MET ILE LYS ASP GLU LEU LEU ARG HIS ASP
SEQRES 39 A 532 SER GLY ASP GLN ASP ILE ASN VAL VAL SER THR TYR ILE
SEQRES 40 A 532 SER LYS MET LYS VAL ILE TYR PRO ALA VAL GLU GLY ARG
SEQRES 41 A 532 ILE LYS PHE SER LEU GLU HIS HIS HIS HIS HIS HIS
HET ZN A 601 1
HET ZN A 602 1
HET CA A 603 1
HET QCQ A 604 35
HETNAM ZN ZINC ION
HETNAM CA CALCIUM ION
HETNAM QCQ [[(2~{R},3~{R},4~{S},5~{R})-5-[2-CHLORANYL-6-
HETNAM 2 QCQ [(PHENYLMETHYL)AMINO]PURIN-9-YL]-4-FLUORANYL-3-
HETNAM 3 QCQ OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL-
HETNAM 4 QCQ PHOSPHORYL]METHYLPHOSPHONIC ACID
FORMUL 2 ZN 2(ZN 2+)
FORMUL 4 CA CA 2+
FORMUL 5 QCQ C18 H21 CL F N5 O8 P2
FORMUL 6 HOH *285(H2 O)
HELIX 1 AA1 ASP A 53 CYS A 57 5 5
HELIX 2 AA2 GLY A 60 GLU A 75 1 16
HELIX 3 AA3 THR A 90 LYS A 97 1 8
HELIX 4 AA4 GLY A 98 ARG A 109 1 12
HELIX 5 AA5 GLY A 116 ASP A 121 5 6
HELIX 6 AA6 VAL A 124 GLU A 129 1 6
HELIX 7 AA7 PRO A 149 SER A 155 1 7
HELIX 8 AA8 GLU A 180 SER A 185 1 6
HELIX 9 AA9 ASP A 195 LEU A 210 1 16
HELIX 10 AB1 GLY A 222 VAL A 233 1 12
HELIX 11 AB2 ASP A 317 ILE A 329 1 13
HELIX 12 AB3 LYS A 330 SER A 335 5 6
HELIX 13 AB4 SER A 349 ARG A 354 1 6
HELIX 14 AB5 CYS A 358 ARG A 374 1 17
HELIX 15 AB6 GLY A 392 ILE A 394 5 3
HELIX 16 AB7 TRP A 408 LEU A 415 1 8
HELIX 17 AB8 GLY A 428 VAL A 439 1 12
HELIX 18 AB9 ASN A 499 ASN A 503 1 5
HELIX 19 AC1 GLY A 504 GLY A 507 5 4
HELIX 20 AC2 PHE A 508 LEU A 515 1 8
HELIX 21 AC3 GLN A 523 LYS A 536 1 14
SHEET 1 AA1 6 ILE A 139 LEU A 140 0
SHEET 2 AA1 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140
SHEET 3 AA1 6 ASN A 77 ASP A 82 1 N ASP A 82 O ALA A 114
SHEET 4 AA1 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79
SHEET 5 AA1 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31
SHEET 6 AA1 6 VAL A 300 GLY A 305 -1 O HIS A 304 N LYS A 291
SHEET 1 AA2 6 ILE A 139 LEU A 140 0
SHEET 2 AA2 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140
SHEET 3 AA2 6 ASN A 77 ASP A 82 1 N ASP A 82 O ALA A 114
SHEET 4 AA2 6 TRP A 27 THR A 34 1 N LEU A 32 O LEU A 79
SHEET 5 AA2 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31
SHEET 6 AA2 6 ILE A 308 LEU A 309 -1 O ILE A 308 N LEU A 287
SHEET 1 AA3 2 ILE A 144 ALA A 146 0
SHEET 2 AA3 2 LEU A 191 PHE A 193 -1 O VAL A 192 N LYS A 145
SHEET 1 AA4 6 TYR A 161 VAL A 166 0
SHEET 2 AA4 6 GLU A 169 THR A 177 -1 O GLU A 169 N VAL A 166
SHEET 3 AA4 6 ILE A 215 HIS A 220 1 O LEU A 218 N VAL A 174
SHEET 4 AA4 6 VAL A 238 VAL A 240 1 O VAL A 238 N ALA A 217
SHEET 5 AA4 6 LYS A 274 VAL A 278 1 O VAL A 278 N VAL A 239
SHEET 6 AA4 6 PHE A 265 THR A 268 -1 N VAL A 267 O VAL A 275
SHEET 1 AA5 3 THR A 405 THR A 407 0
SHEET 2 AA5 3 GLU A 338 THR A 342 -1 N LEU A 339 O ILE A 406
SHEET 3 AA5 3 VAL A 537 ILE A 538 1 O ILE A 538 N LYS A 341
SHEET 1 AA6 5 LEU A 450 GLY A 453 0
SHEET 2 AA6 5 MET A 386 ASN A 390 -1 N LEU A 389 O GLN A 451
SHEET 3 AA6 5 VAL A 492 PRO A 498 1 O ILE A 496 N MET A 386
SHEET 4 AA6 5 PHE A 421 LYS A 427 -1 N LEU A 426 O TYR A 493
SHEET 5 AA6 5 ARG A 517 ASP A 519 -1 O ASP A 519 N LEU A 423
SHEET 1 AA7 4 TYR A 484 PRO A 486 0
SHEET 2 AA7 4 VAL A 469 LEU A 475 -1 N VAL A 474 O ASP A 485
SHEET 3 AA7 4 ILE A 455 TYR A 459 -1 N HIS A 456 O ASP A 473
SHEET 4 AA7 4 ILE A 546 PHE A 548 1 O LYS A 547 N TYR A 459
SSBOND 1 CYS A 51 CYS A 57 1555 1555 2.03
SSBOND 2 CYS A 353 CYS A 358 1555 1555 2.05
SSBOND 3 CYS A 365 CYS A 387 1555 1555 2.03
SSBOND 4 CYS A 476 CYS A 479 1555 1555 2.03
LINK OD2 ASP A 36 ZN ZN A 601 1555 1555 2.12
LINK NE2 HIS A 38 ZN ZN A 601 1555 1555 2.05
LINK OD2 ASP A 85 ZN ZN A 601 1555 1555 2.35
LINK OD2 ASP A 85 ZN ZN A 602 1555 1555 2.14
LINK OD1 ASN A 117 ZN ZN A 602 1555 1555 2.15
LINK O ASN A 213 CA CA A 603 1555 1555 2.30
LINK NE2 HIS A 220 ZN ZN A 602 1555 1555 2.13
LINK OD1 ASP A 237 CA CA A 603 1555 1555 2.63
LINK OD2 ASP A 237 CA CA A 603 1555 1555 2.54
LINK ND1 HIS A 243 ZN ZN A 602 1555 1555 2.23
LINK O GLY A 298 CA CA A 603 1555 1555 2.37
LINK ZN ZN A 601 O3B QCQ A 604 1555 1555 2.14
LINK ZN ZN A 601 O HOH A 714 1555 1555 2.14
LINK ZN ZN A 602 O2B QCQ A 604 1555 1555 1.93
LINK CA CA A 603 O HOH A 790 1555 1555 2.52
LINK CA CA A 603 O HOH A 912 1555 1555 2.80
CISPEP 1 TYR A 263 PRO A 264 0 -2.09
SITE 1 AC1 5 ASP A 36 HIS A 38 ASP A 85 QCQ A 604
SITE 2 AC1 5 HOH A 714
SITE 1 AC2 5 ASP A 85 ASN A 117 HIS A 220 HIS A 243
SITE 2 AC2 5 QCQ A 604
SITE 1 AC3 5 ASN A 213 ASP A 237 GLY A 298 HOH A 790
SITE 2 AC3 5 HOH A 912
SITE 1 AC4 24 HIS A 38 ASP A 85 ASN A 117 HIS A 118
SITE 2 AC4 24 ASP A 121 LEU A 184 SER A 185 HIS A 243
SITE 3 AC4 24 ASN A 245 ARG A 354 ASN A 390 GLY A 392
SITE 4 AC4 24 ARG A 395 PHE A 417 GLY A 447 PHE A 500
SITE 5 AC4 24 ASP A 506 ZN A 601 ZN A 602 HOH A 714
SITE 6 AC4 24 HOH A 718 HOH A 738 HOH A 780 HOH A 800
CRYST1 53.240 96.450 235.170 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018783 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010368 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004252 0.00000