HEADER TRANSCRIPTION 04-JUN-20 6ZA0 TITLE STRUCTURE OF THE TRANSCRIPTIONAL REPRESSOR ATU1419 (VANR) IN COMPLEX TITLE 2 WITH A FORTUITOUS CITRATE FROM AGROBACTERIUM FABRUM (P21212 SPACE TITLE 3 GROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 GENE: ATU1419; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPRESSOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX,P.LEGRAND REVDAT 4 24-JAN-24 6ZA0 1 REMARK REVDAT 3 20-JAN-21 6ZA0 1 JRNL REVDAT 2 23-DEC-20 6ZA0 1 JRNL REVDAT 1 02-DEC-20 6ZA0 0 JRNL AUTH A.VIGOUROUX,T.MEYER,A.NARETTO,P.LEGRAND,M.AUMONT-NICAISE, JRNL AUTH 2 A.DI CICCO,S.RENOUD,J.DORE,D.LEVY,L.VIAL,C.LAVIRE,S.MORERA JRNL TITL CHARACTERIZATION OF THE FIRST TETRAMERIC TRANSCRIPTION JRNL TITL 2 FACTOR OF THE GNTR SUPERFAMILY WITH ALLOSTERIC REGULATION JRNL TITL 3 FROM THE BACTERIAL PATHOGEN AGROBACTERIUM FABRUM. JRNL REF NUCLEIC ACIDS RES. V. 49 529 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33313837 JRNL DOI 10.1093/NAR/GKAA1181 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 50625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2528 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1013 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2551 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 975 REMARK 3 BIN R VALUE (WORKING SET) : 0.2517 REMARK 3 BIN FREE R VALUE : 0.3365 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.75 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3647 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14220 REMARK 3 B22 (A**2) : 0.32830 REMARK 3 B33 (A**2) : 0.81390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.102 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.092 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.097 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.090 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3783 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5101 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1382 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 673 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3783 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 482 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4848 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.86 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|5 - A|76 } REMARK 3 ORIGIN FOR THE GROUP (A): -30.2456 37.7720 -16.8630 REMARK 3 T TENSOR REMARK 3 T11: -0.0183 T22: -0.0409 REMARK 3 T33: 0.0395 T12: -0.0233 REMARK 3 T13: -0.0177 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 0.9715 L22: 3.0885 REMARK 3 L33: 0.7275 L12: 1.2805 REMARK 3 L13: 0.2136 L23: 0.8038 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0511 S13: 0.1417 REMARK 3 S21: -0.0148 S22: -0.0604 S23: -0.0459 REMARK 3 S31: -0.1576 S32: -0.0093 S33: 0.0439 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|77 - A|500 } REMARK 3 ORIGIN FOR THE GROUP (A): -45.7960 17.2398 -8.2016 REMARK 3 T TENSOR REMARK 3 T11: -0.0176 T22: -0.0200 REMARK 3 T33: 0.0039 T12: 0.0132 REMARK 3 T13: 0.0072 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.3446 L22: 0.6166 REMARK 3 L33: 0.9376 L12: -0.1895 REMARK 3 L13: 0.0055 L23: -0.1684 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.0064 S13: 0.0216 REMARK 3 S21: -0.0354 S22: -0.0192 S23: 0.0205 REMARK 3 S31: -0.0771 S32: -0.0583 S33: 0.0038 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|5 - B|76 } REMARK 3 ORIGIN FOR THE GROUP (A): -15.5631 32.0040 -2.2323 REMARK 3 T TENSOR REMARK 3 T11: -0.0527 T22: -0.0816 REMARK 3 T33: 0.0102 T12: -0.0492 REMARK 3 T13: -0.0399 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.0419 L22: 6.9623 REMARK 3 L33: 1.4456 L12: 1.2182 REMARK 3 L13: 0.0775 L23: -1.2506 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: 0.1013 S13: 0.2349 REMARK 3 S21: 0.3100 S22: -0.0034 S23: -0.2240 REMARK 3 S31: -0.1966 S32: 0.1249 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|77 - B|500 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.2591 5.3048 -10.6213 REMARK 3 T TENSOR REMARK 3 T11: -0.0397 T22: 0.0056 REMARK 3 T33: -0.0040 T12: -0.0090 REMARK 3 T13: 0.0148 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.1114 L22: 0.2700 REMARK 3 L33: 0.8230 L12: 0.0006 REMARK 3 L13: 0.3319 L23: 0.0103 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.0009 S13: 0.0215 REMARK 3 S21: -0.0179 S22: -0.0058 S23: -0.0032 REMARK 3 S31: -0.0450 S32: 0.0947 S33: 0.0022 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978570 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51917 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Z74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AS, NA-CITRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.11050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.80350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.11050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.80350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 531 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLN B 3 REMARK 465 VAL B 4 REMARK 465 ASP B 5 REMARK 465 ALA B 6 REMARK 465 ASP B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 9 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 229 57.53 -140.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 567 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B 565 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 137 OD1 REMARK 620 2 HIS A 141 NE2 88.6 REMARK 620 3 HIS A 192 NE2 86.0 109.6 REMARK 620 4 HIS A 214 NE2 169.7 101.7 90.5 REMARK 620 5 CIT A 302 O6 79.7 153.2 93.7 90.9 REMARK 620 6 CIT A 302 O7 90.3 88.8 161.1 89.9 67.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 137 OD1 REMARK 620 2 HIS B 141 NE2 90.2 REMARK 620 3 HIS B 192 NE2 85.9 108.9 REMARK 620 4 HIS B 214 NE2 168.5 101.3 89.7 REMARK 620 5 CIT B 302 O7 90.9 89.7 161.1 89.7 REMARK 620 6 CIT B 302 O5 80.2 155.2 93.2 89.4 67.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 304 DBREF 6ZA0 A 1 244 UNP A9CJ36 A9CJ36_AGRFC 1 244 DBREF 6ZA0 B 1 244 UNP A9CJ36 A9CJ36_AGRFC 1 244 SEQADV 6ZA0 HIS A 245 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS A 246 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS A 247 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS A 248 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS A 249 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS A 250 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS B 245 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS B 246 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS B 247 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS B 248 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS B 249 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA0 HIS B 250 UNP A9CJ36 EXPRESSION TAG SEQRES 1 A 250 MET ARG GLN VAL ASP ALA ALA THR HIS GLY GLY ARG ALA SEQRES 2 A 250 VAL ILE GLU LEU ARG GLU LYS ILE LEU SER GLY GLU LEU SEQRES 3 A 250 PRO GLY GLY MET ARG LEU PHE GLU VAL SER THR ALA GLU SEQRES 4 A 250 LEU LEU ASP ILE SER ARG THR PRO VAL ARG GLU ALA LEU SEQRES 5 A 250 SER ARG LEU THR GLU GLU GLY LEU LEU ASN ARG LEU PRO SEQRES 6 A 250 GLY GLY GLY PHE VAL VAL ARG ARG PHE GLY PHE ALA ASP SEQRES 7 A 250 VAL VAL ASP ALA ILE GLU VAL ARG GLY VAL MET GLU GLY SEQRES 8 A 250 THR ALA ALA ARG LEU ALA ALA GLU ARG GLY VAL SER LYS SEQRES 9 A 250 VAL ALA LEU GLU GLU ILE ASP ALA THR VAL GLN GLN LEU SEQRES 10 A 250 ASP LEU CYS PHE GLY ASP ARG VAL ASP ASP VAL ASP PHE SEQRES 11 A 250 ASP GLY TYR ALA ALA LEU ASN ARG ILE PHE HIS HIS GLN SEQRES 12 A 250 LEU ALA ALA LEU CYS GLY SER GLU MET ILE ARG ARG GLU SEQRES 13 A 250 VAL GLU ARG ALA SER SER LEU PRO PHE ALA SER PRO SER SEQRES 14 A 250 ALA PHE LEU PRO ASP LYS ALA ASN ILE GLY ALA PHE ARG SEQRES 15 A 250 ARG SER LEU ARG GLY ALA GLN GLU GLN HIS LYS ALA ILE SEQRES 16 A 250 VAL ALA ALA ILE VAL ALA ARG GLU GLY ALA ARG ALA GLU SEQRES 17 A 250 ALA VAL ALA ARG GLU HIS SER ARG THR ALA ARG THR ASN SEQRES 18 A 250 LEU GLU TYR MET ILE ARG GLU ALA PRO GLU LEU ILE ALA SEQRES 19 A 250 GLN VAL PRO GLY LEU ALA LEU ILE SER ASP HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS SEQRES 1 B 250 MET ARG GLN VAL ASP ALA ALA THR HIS GLY GLY ARG ALA SEQRES 2 B 250 VAL ILE GLU LEU ARG GLU LYS ILE LEU SER GLY GLU LEU SEQRES 3 B 250 PRO GLY GLY MET ARG LEU PHE GLU VAL SER THR ALA GLU SEQRES 4 B 250 LEU LEU ASP ILE SER ARG THR PRO VAL ARG GLU ALA LEU SEQRES 5 B 250 SER ARG LEU THR GLU GLU GLY LEU LEU ASN ARG LEU PRO SEQRES 6 B 250 GLY GLY GLY PHE VAL VAL ARG ARG PHE GLY PHE ALA ASP SEQRES 7 B 250 VAL VAL ASP ALA ILE GLU VAL ARG GLY VAL MET GLU GLY SEQRES 8 B 250 THR ALA ALA ARG LEU ALA ALA GLU ARG GLY VAL SER LYS SEQRES 9 B 250 VAL ALA LEU GLU GLU ILE ASP ALA THR VAL GLN GLN LEU SEQRES 10 B 250 ASP LEU CYS PHE GLY ASP ARG VAL ASP ASP VAL ASP PHE SEQRES 11 B 250 ASP GLY TYR ALA ALA LEU ASN ARG ILE PHE HIS HIS GLN SEQRES 12 B 250 LEU ALA ALA LEU CYS GLY SER GLU MET ILE ARG ARG GLU SEQRES 13 B 250 VAL GLU ARG ALA SER SER LEU PRO PHE ALA SER PRO SER SEQRES 14 B 250 ALA PHE LEU PRO ASP LYS ALA ASN ILE GLY ALA PHE ARG SEQRES 15 B 250 ARG SER LEU ARG GLY ALA GLN GLU GLN HIS LYS ALA ILE SEQRES 16 B 250 VAL ALA ALA ILE VAL ALA ARG GLU GLY ALA ARG ALA GLU SEQRES 17 B 250 ALA VAL ALA ARG GLU HIS SER ARG THR ALA ARG THR ASN SEQRES 18 B 250 LEU GLU TYR MET ILE ARG GLU ALA PRO GLU LEU ILE ALA SEQRES 19 B 250 GLN VAL PRO GLY LEU ALA LEU ILE SER ASP HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS HET ZN A 301 1 HET CIT A 302 13 HET EDO A 303 4 HET ZN B 301 1 HET CIT B 302 13 HET PEG B 303 7 HET PEG B 304 7 HETNAM ZN ZINC ION HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 5 EDO C2 H6 O2 FORMUL 8 PEG 2(C4 H10 O3) FORMUL 10 HOH *332(H2 O) HELIX 1 AA1 GLY A 10 SER A 23 1 14 HELIX 2 AA2 PHE A 33 ASP A 42 1 10 HELIX 3 AA3 SER A 44 GLU A 58 1 15 HELIX 4 AA4 GLY A 75 GLY A 101 1 27 HELIX 5 AA5 SER A 103 LEU A 119 1 17 HELIX 6 AA6 ASP A 129 LEU A 147 1 19 HELIX 7 AA7 SER A 150 ALA A 160 1 11 HELIX 8 AA8 PRO A 173 ASN A 177 5 5 HELIX 9 AA9 ILE A 178 ALA A 201 1 24 HELIX 10 AB1 GLU A 203 ALA A 229 1 27 HELIX 11 AB2 ALA A 229 ALA A 234 1 6 HELIX 12 AB3 GLN A 235 ALA A 240 5 6 HELIX 13 AB4 THR B 8 SER B 23 1 16 HELIX 14 AB5 PHE B 33 ASP B 42 1 10 HELIX 15 AB6 SER B 44 GLU B 58 1 15 HELIX 16 AB7 GLY B 75 GLY B 101 1 27 HELIX 17 AB8 SER B 103 LEU B 119 1 17 HELIX 18 AB9 ASP B 129 LEU B 147 1 19 HELIX 19 AC1 SER B 150 ALA B 160 1 11 HELIX 20 AC2 PRO B 173 ASN B 177 5 5 HELIX 21 AC3 ILE B 178 ALA B 201 1 24 HELIX 22 AC4 GLU B 203 ALA B 229 1 27 HELIX 23 AC5 PRO B 230 VAL B 236 5 7 HELIX 24 AC6 GLY B 238 SER B 243 1 6 SHEET 1 AA1 3 ARG A 31 LEU A 32 0 SHEET 2 AA1 3 PHE A 69 VAL A 71 -1 O PHE A 69 N LEU A 32 SHEET 3 AA1 3 LEU A 61 ARG A 63 -1 N ASN A 62 O VAL A 70 SHEET 1 AA2 3 ARG B 31 LEU B 32 0 SHEET 2 AA2 3 PHE B 69 VAL B 71 -1 O PHE B 69 N LEU B 32 SHEET 3 AA2 3 LEU B 61 ARG B 63 -1 N ASN B 62 O VAL B 70 LINK OD1 ASN A 137 ZN ZN A 301 1555 1555 2.25 LINK NE2 HIS A 141 ZN ZN A 301 1555 1555 2.08 LINK NE2 HIS A 192 ZN ZN A 301 1555 1555 2.12 LINK NE2 HIS A 214 ZN ZN A 301 1555 1555 2.10 LINK ZN ZN A 301 O6 CIT A 302 1555 1555 2.28 LINK ZN ZN A 301 O7 CIT A 302 1555 1555 2.27 LINK OD1 ASN B 137 ZN ZN B 301 1555 1555 2.23 LINK NE2 HIS B 141 ZN ZN B 301 1555 1555 2.07 LINK NE2 HIS B 192 ZN ZN B 301 1555 1555 2.13 LINK NE2 HIS B 214 ZN ZN B 301 1555 1555 2.13 LINK ZN ZN B 301 O7 CIT B 302 1555 1555 2.26 LINK ZN ZN B 301 O5 CIT B 302 1555 1555 2.27 SITE 1 AC1 5 ASN A 137 HIS A 141 HIS A 192 HIS A 214 SITE 2 AC1 5 CIT A 302 SITE 1 AC2 15 ARG A 86 TYR A 133 ASN A 137 HIS A 141 SITE 2 AC2 15 PRO A 168 LEU A 185 ALA A 188 HIS A 192 SITE 3 AC2 15 HIS A 214 SER A 215 THR A 217 ALA A 218 SITE 4 AC2 15 ZN A 301 HOH A 418 HOH A 440 SITE 1 AC3 6 LEU A 119 CYS A 120 GLY A 122 ASP A 127 SITE 2 AC3 6 VAL A 128 ASP A 129 SITE 1 AC4 5 ASN B 137 HIS B 141 HIS B 192 HIS B 214 SITE 2 AC4 5 CIT B 302 SITE 1 AC5 16 ARG B 86 TYR B 133 ASN B 137 HIS B 141 SITE 2 AC5 16 PRO B 168 LEU B 172 LEU B 185 ALA B 188 SITE 3 AC5 16 HIS B 192 HIS B 214 SER B 215 THR B 217 SITE 4 AC5 16 ALA B 218 ZN B 301 HOH B 417 HOH B 458 SITE 1 AC6 7 LEU B 119 ASP B 127 ASP B 129 ASP B 131 SITE 2 AC6 7 GLY B 132 HOH B 434 HOH B 453 SITE 1 AC7 2 ASP B 118 ARG B 186 CRYST1 72.221 145.607 41.194 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013846 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024275 0.00000