HEADER TRANSCRIPTION 04-JUN-20 6ZA3 TITLE STRUCTURE OF THE TRANSCRIPTIONAL REPRESSOR ATU1419 (VANR) FROM TITLE 2 AGROBACTERIUM FABRUM IN COMPLEX A PALINDROMIC DNA (C2221 SPACE GROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*AP*TP*GP*TP*AP*TP*AP*CP*AP*T)-3'); COMPND 7 CHAIN: E, F; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 GENE: ATU1419; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM STR. C58; SOURCE 9 ORGANISM_TAXID: 176299; SOURCE 10 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS REPRESSOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.MORERA,A.VIGOUROUX,P.LEGRAND REVDAT 4 24-JAN-24 6ZA3 1 REMARK REVDAT 3 20-JAN-21 6ZA3 1 JRNL REVDAT 2 23-DEC-20 6ZA3 1 JRNL REVDAT 1 02-DEC-20 6ZA3 0 JRNL AUTH A.VIGOUROUX,T.MEYER,A.NARETTO,P.LEGRAND,M.AUMONT-NICAISE, JRNL AUTH 2 A.DI CICCO,S.RENOUD,J.DORE,D.LEVY,L.VIAL,C.LAVIRE,S.MORERA JRNL TITL CHARACTERIZATION OF THE FIRST TETRAMERIC TRANSCRIPTION JRNL TITL 2 FACTOR OF THE GNTR SUPERFAMILY WITH ALLOSTERIC REGULATION JRNL TITL 3 FROM THE BACTERIAL PATHOGEN AGROBACTERIUM FABRUM. JRNL REF NUCLEIC ACIDS RES. V. 49 529 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33313837 JRNL DOI 10.1093/NAR/GKAA1181 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 39378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 788 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2080 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 743 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE : 0.2731 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.71 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 45 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3637 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96150 REMARK 3 B22 (A**2) : -2.39760 REMARK 3 B33 (A**2) : 1.43610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.174 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.154 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.172 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.154 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4179 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5716 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1453 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 679 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4179 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 542 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4884 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.84 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.04 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|5 - 76 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.4243 -12.0058 -6.4057 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: -0.0230 REMARK 3 T33: -0.0236 T12: 0.0077 REMARK 3 T13: -0.0441 T23: -0.0698 REMARK 3 L TENSOR REMARK 3 L11: 2.4086 L22: 1.1817 REMARK 3 L33: 3.3975 L12: 0.3679 REMARK 3 L13: -0.3153 L23: 0.1797 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.3591 S13: 0.3773 REMARK 3 S21: -0.0440 S22: -0.0318 S23: 0.1591 REMARK 3 S31: -0.5442 S32: 0.0042 S33: 0.0426 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|77 - 500 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.1347 -5.4891 -32.9566 REMARK 3 T TENSOR REMARK 3 T11: -0.0106 T22: -0.1420 REMARK 3 T33: -0.0163 T12: -0.0024 REMARK 3 T13: 0.0424 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.4583 L22: 2.3855 REMARK 3 L33: 1.7886 L12: -0.0143 REMARK 3 L13: 0.2340 L23: -0.2558 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: -0.0929 S13: 0.2833 REMARK 3 S21: 0.1328 S22: -0.0729 S23: -0.0599 REMARK 3 S31: -0.2296 S32: -0.0087 S33: 0.0195 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|5 - 76 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.7736 -29.0167 -7.1584 REMARK 3 T TENSOR REMARK 3 T11: -0.0562 T22: 0.0358 REMARK 3 T33: -0.0676 T12: 0.0072 REMARK 3 T13: 0.0533 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.3217 L22: 0.9906 REMARK 3 L33: 4.7971 L12: 0.6625 REMARK 3 L13: -0.4042 L23: -0.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.1556 S12: -0.2975 S13: -0.1094 REMARK 3 S21: -0.0252 S22: -0.0178 S23: -0.0820 REMARK 3 S31: 0.1910 S32: 0.0263 S33: 0.1734 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|77 - 500 } REMARK 3 ORIGIN FOR THE GROUP (A): 1.2297 -36.0727 -32.7237 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: -0.1338 REMARK 3 T33: -0.0084 T12: -0.0050 REMARK 3 T13: -0.0147 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.0543 L22: 1.7736 REMARK 3 L33: 1.9317 L12: 0.0676 REMARK 3 L13: -0.1271 L23: 0.3946 REMARK 3 S TENSOR REMARK 3 S11: 0.0866 S12: -0.0685 S13: -0.3367 REMARK 3 S21: 0.1034 S22: -0.1351 S23: -0.0040 REMARK 3 S31: 0.2247 S32: -0.0174 S33: 0.0485 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { E|* F|*} REMARK 3 ORIGIN FOR THE GROUP (A): -4.9550 -19.6311 9.3284 REMARK 3 T TENSOR REMARK 3 T11: -0.1164 T22: 0.1802 REMARK 3 T33: -0.1904 T12: 0.0326 REMARK 3 T13: 0.0213 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 4.0726 L22: 3.4041 REMARK 3 L33: 3.2018 L12: 0.1393 REMARK 3 L13: 0.9982 L23: 0.2421 REMARK 3 S TENSOR REMARK 3 S11: -0.1123 S12: -0.5442 S13: 0.2013 REMARK 3 S21: 0.4615 S22: -0.0954 S23: 0.2960 REMARK 3 S31: -0.2830 S32: -0.2196 S33: 0.2077 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109184. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Z74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, MES, NA-ACETATE, PH 6.7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.77600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.77600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.22300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.20100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.22300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.20100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.77600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.22300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.20100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.77600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.22300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.20100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 456 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLN A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 ALA A 6 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLN B 3 REMARK 465 VAL B 4 REMARK 465 ASP B 5 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 127 86.52 -69.43 REMARK 500 PHE A 171 47.92 -109.73 REMARK 500 ALA A 229 62.40 -150.12 REMARK 500 ASP B 127 86.25 -69.12 REMARK 500 PHE B 171 46.55 -107.88 REMARK 500 ALA B 229 70.39 -152.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 137 OD1 REMARK 620 2 HIS A 141 NE2 91.2 REMARK 620 3 HIS A 192 NE2 89.3 115.1 REMARK 620 4 HIS A 214 NE2 159.7 106.3 92.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 137 OD1 REMARK 620 2 HIS B 141 NE2 91.2 REMARK 620 3 HIS B 192 NE2 90.1 116.5 REMARK 620 4 HIS B 214 NE2 158.4 106.6 92.8 REMARK 620 5 HOH B 437 O 71.9 141.3 98.5 86.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL F 101 DBREF 6ZA3 A 1 244 UNP A9CJ36 A9CJ36_AGRFC 1 244 DBREF 6ZA3 B 1 244 UNP A9CJ36 A9CJ36_AGRFC 1 244 DBREF 6ZA3 E 1 10 PDB 6ZA3 6ZA3 1 10 DBREF 6ZA3 F 1 10 PDB 6ZA3 6ZA3 1 10 SEQADV 6ZA3 HIS A 245 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS A 246 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS A 247 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS A 248 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS A 249 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS A 250 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS B 245 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS B 246 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS B 247 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS B 248 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS B 249 UNP A9CJ36 EXPRESSION TAG SEQADV 6ZA3 HIS B 250 UNP A9CJ36 EXPRESSION TAG SEQRES 1 A 250 MET ARG GLN VAL ASP ALA ALA THR HIS GLY GLY ARG ALA SEQRES 2 A 250 VAL ILE GLU LEU ARG GLU LYS ILE LEU SER GLY GLU LEU SEQRES 3 A 250 PRO GLY GLY MET ARG LEU PHE GLU VAL SER THR ALA GLU SEQRES 4 A 250 LEU LEU ASP ILE SER ARG THR PRO VAL ARG GLU ALA LEU SEQRES 5 A 250 SER ARG LEU THR GLU GLU GLY LEU LEU ASN ARG LEU PRO SEQRES 6 A 250 GLY GLY GLY PHE VAL VAL ARG ARG PHE GLY PHE ALA ASP SEQRES 7 A 250 VAL VAL ASP ALA ILE GLU VAL ARG GLY VAL MET GLU GLY SEQRES 8 A 250 THR ALA ALA ARG LEU ALA ALA GLU ARG GLY VAL SER LYS SEQRES 9 A 250 VAL ALA LEU GLU GLU ILE ASP ALA THR VAL GLN GLN LEU SEQRES 10 A 250 ASP LEU CYS PHE GLY ASP ARG VAL ASP ASP VAL ASP PHE SEQRES 11 A 250 ASP GLY TYR ALA ALA LEU ASN ARG ILE PHE HIS HIS GLN SEQRES 12 A 250 LEU ALA ALA LEU CYS GLY SER GLU MET ILE ARG ARG GLU SEQRES 13 A 250 VAL GLU ARG ALA SER SER LEU PRO PHE ALA SER PRO SER SEQRES 14 A 250 ALA PHE LEU PRO ASP LYS ALA ASN ILE GLY ALA PHE ARG SEQRES 15 A 250 ARG SER LEU ARG GLY ALA GLN GLU GLN HIS LYS ALA ILE SEQRES 16 A 250 VAL ALA ALA ILE VAL ALA ARG GLU GLY ALA ARG ALA GLU SEQRES 17 A 250 ALA VAL ALA ARG GLU HIS SER ARG THR ALA ARG THR ASN SEQRES 18 A 250 LEU GLU TYR MET ILE ARG GLU ALA PRO GLU LEU ILE ALA SEQRES 19 A 250 GLN VAL PRO GLY LEU ALA LEU ILE SER ASP HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS SEQRES 1 B 250 MET ARG GLN VAL ASP ALA ALA THR HIS GLY GLY ARG ALA SEQRES 2 B 250 VAL ILE GLU LEU ARG GLU LYS ILE LEU SER GLY GLU LEU SEQRES 3 B 250 PRO GLY GLY MET ARG LEU PHE GLU VAL SER THR ALA GLU SEQRES 4 B 250 LEU LEU ASP ILE SER ARG THR PRO VAL ARG GLU ALA LEU SEQRES 5 B 250 SER ARG LEU THR GLU GLU GLY LEU LEU ASN ARG LEU PRO SEQRES 6 B 250 GLY GLY GLY PHE VAL VAL ARG ARG PHE GLY PHE ALA ASP SEQRES 7 B 250 VAL VAL ASP ALA ILE GLU VAL ARG GLY VAL MET GLU GLY SEQRES 8 B 250 THR ALA ALA ARG LEU ALA ALA GLU ARG GLY VAL SER LYS SEQRES 9 B 250 VAL ALA LEU GLU GLU ILE ASP ALA THR VAL GLN GLN LEU SEQRES 10 B 250 ASP LEU CYS PHE GLY ASP ARG VAL ASP ASP VAL ASP PHE SEQRES 11 B 250 ASP GLY TYR ALA ALA LEU ASN ARG ILE PHE HIS HIS GLN SEQRES 12 B 250 LEU ALA ALA LEU CYS GLY SER GLU MET ILE ARG ARG GLU SEQRES 13 B 250 VAL GLU ARG ALA SER SER LEU PRO PHE ALA SER PRO SER SEQRES 14 B 250 ALA PHE LEU PRO ASP LYS ALA ASN ILE GLY ALA PHE ARG SEQRES 15 B 250 ARG SER LEU ARG GLY ALA GLN GLU GLN HIS LYS ALA ILE SEQRES 16 B 250 VAL ALA ALA ILE VAL ALA ARG GLU GLY ALA ARG ALA GLU SEQRES 17 B 250 ALA VAL ALA ARG GLU HIS SER ARG THR ALA ARG THR ASN SEQRES 18 B 250 LEU GLU TYR MET ILE ARG GLU ALA PRO GLU LEU ILE ALA SEQRES 19 B 250 GLN VAL PRO GLY LEU ALA LEU ILE SER ASP HIS HIS HIS SEQRES 20 B 250 HIS HIS HIS SEQRES 1 E 10 DA DT DG DT DA DT DA DC DA DT SEQRES 1 F 10 DA DT DG DT DA DT DA DC DA DT HET ZN A 301 1 HET CL A 302 1 HET EDO A 303 4 HET EDO A 304 4 HET ZN B 301 1 HET PG4 B 302 13 HET ACT B 303 4 HET CL F 101 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 ZN 2(ZN 2+) FORMUL 6 CL 2(CL 1-) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 10 PG4 C8 H18 O5 FORMUL 11 ACT C2 H3 O2 1- FORMUL 13 HOH *146(H2 O) HELIX 1 AA1 THR A 8 SER A 23 1 16 HELIX 2 AA2 PHE A 33 ASP A 42 1 10 HELIX 3 AA3 SER A 44 GLU A 58 1 15 HELIX 4 AA4 GLY A 75 GLY A 101 1 27 HELIX 5 AA5 SER A 103 LEU A 119 1 17 HELIX 6 AA6 ASP A 129 LEU A 147 1 19 HELIX 7 AA7 SER A 150 SER A 161 1 12 HELIX 8 AA8 SER A 162 SER A 167 5 6 HELIX 9 AA9 ILE A 178 SER A 184 1 7 HELIX 10 AB1 SER A 184 ALA A 201 1 18 HELIX 11 AB2 GLU A 203 ALA A 229 1 27 HELIX 12 AB3 PRO A 230 ILE A 233 5 4 HELIX 13 AB4 THR B 8 SER B 23 1 16 HELIX 14 AB5 PHE B 33 ASP B 42 1 10 HELIX 15 AB6 SER B 44 GLU B 58 1 15 HELIX 16 AB7 GLY B 75 GLY B 101 1 27 HELIX 17 AB8 SER B 103 LEU B 119 1 17 HELIX 18 AB9 ASP B 129 LEU B 147 1 19 HELIX 19 AC1 SER B 150 SER B 161 1 12 HELIX 20 AC2 SER B 162 SER B 167 5 6 HELIX 21 AC3 ILE B 178 SER B 184 1 7 HELIX 22 AC4 SER B 184 ALA B 201 1 18 HELIX 23 AC5 GLU B 203 ALA B 229 1 27 HELIX 24 AC6 PRO B 230 VAL B 236 5 7 SHEET 1 AA1 2 LEU A 61 ARG A 63 0 SHEET 2 AA1 2 PHE A 69 VAL A 71 -1 O VAL A 70 N ASN A 62 SHEET 1 AA2 2 LEU B 61 ARG B 63 0 SHEET 2 AA2 2 PHE B 69 VAL B 71 -1 O VAL B 70 N ASN B 62 LINK OD1 ASN A 137 ZN ZN A 301 1555 1555 2.31 LINK NE2 HIS A 141 ZN ZN A 301 1555 1555 2.10 LINK NE2 HIS A 192 ZN ZN A 301 1555 1555 2.10 LINK NE2 HIS A 214 ZN ZN A 301 1555 1555 2.08 LINK OD1 ASN B 137 ZN ZN B 301 1555 1555 2.33 LINK NE2 HIS B 141 ZN ZN B 301 1555 1555 2.06 LINK NE2 HIS B 192 ZN ZN B 301 1555 1555 2.08 LINK NE2 HIS B 214 ZN ZN B 301 1555 1555 2.12 LINK ZN ZN B 301 O HOH B 437 1555 1555 2.60 SITE 1 AC1 5 ASN A 137 HIS A 141 HIS A 192 HIS A 214 SITE 2 AC1 5 HOH A 440 SITE 1 AC2 5 ARG A 72 HOH A 405 MET B 152 ARG B 155 SITE 2 AC2 5 HOH B 455 SITE 1 AC3 1 ARG A 154 SITE 1 AC4 3 ARG A 100 ARG B 219 HOH B 427 SITE 1 AC5 5 ASN B 137 HIS B 141 HIS B 192 HIS B 214 SITE 2 AC5 5 HOH B 437 SITE 1 AC6 6 PHE A 33 GLU B 16 GLU B 19 LYS B 20 SITE 2 AC6 6 GLU B 25 LEU B 40 SITE 1 AC7 2 GLY A 66 DG E 3 SITE 1 AC8 1 DA F 1 CRYST1 62.446 112.402 179.552 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016014 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005569 0.00000