HEADER OXIDOREDUCTASE 05-JUN-20 6ZAH TITLE ROOM TEMPERATURE XFEL ISOPENICILLIN N SYNTHASE STRUCTURE IN COMPLEX TITLE 2 WITH FE AND ACV AFTER EXPOSURE TO DIOXYGEN FOR 800MS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: IPNA, IPS, AN2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, OXYGEN BINDING, XFEL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.J.A.G.KAMPS,K.SUTHERLIN,C.PHARM,M.A.MCDONOUGH,T.M.LEISSING, AUTHOR 2 P.ALLER,A.BUTRYN,J.LINYARD,P.LANG,J.BREM,F.D.FULLER,A.BATYUK, AUTHOR 3 M.S.HUNTER,I.PETTINATI,I.J.CLIFTON,R.ALONSO-MORI,S.GUL,I.YOUNG, AUTHOR 4 I.KIM,A.BHOWMICK,L.ORIORDAN,A.S.BREWSTER,T.D.W.CLARIDGE,N.K.SAUTER, AUTHOR 5 V.YACHANDRA,J.YANO,J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD REVDAT 3 24-JAN-24 6ZAH 1 REMARK REVDAT 2 01-SEP-21 6ZAH 1 JRNL REVDAT 1 09-JUN-21 6ZAH 0 JRNL AUTH P.RABE,J.J.A.G.KAMPS,K.D.SUTHERLIN,J.D.S.LINYARD,P.ALLER, JRNL AUTH 2 C.C.PHAM,H.MAKITA,I.CLIFTON,M.A.MCDONOUGH,T.M.LEISSING, JRNL AUTH 3 D.SHUTIN,P.A.LANG,A.BUTRYN,J.BREM,S.GUL,F.D.FULLER,I.S.KIM, JRNL AUTH 4 M.H.CHEAH,T.FRANSSON,A.BHOWMICK,I.D.YOUNG,L.O'RIORDAN, JRNL AUTH 5 A.S.BREWSTER,I.PETTINATI,M.DOYLE,Y.JOTI,S.OWADA,K.TONO, JRNL AUTH 6 A.BATYUK,M.S.HUNTER,R.ALONSO-MORI,U.BERGMANN,R.L.OWEN, JRNL AUTH 7 N.K.SAUTER,T.D.W.CLARIDGE,C.V.ROBINSON,V.K.YACHANDRA,J.YANO, JRNL AUTH 8 J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD JRNL TITL X-RAY FREE-ELECTRON LASER STUDIES REVEAL CORRELATED MOTION JRNL TITL 2 DURING ISOPENICILLIN N SYNTHASE CATALYSIS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34417180 JRNL DOI 10.1126/SCIADV.ABH0250 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.326 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 59645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.288 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.9293 - 3.4418 1.00 4464 152 0.1198 0.1503 REMARK 3 2 3.4418 - 2.7338 1.00 4299 146 0.1368 0.1868 REMARK 3 3 2.7338 - 2.3887 1.00 4250 143 0.1586 0.2152 REMARK 3 4 2.3887 - 2.1706 1.00 4218 144 0.1435 0.1737 REMARK 3 5 2.1706 - 2.0151 1.00 4199 143 0.1523 0.2056 REMARK 3 6 2.0151 - 1.8964 1.00 4181 142 0.1761 0.1949 REMARK 3 7 1.8964 - 1.8015 1.00 4197 143 0.2062 0.2258 REMARK 3 8 1.8015 - 1.7231 1.00 4172 141 0.2246 0.2633 REMARK 3 9 1.7231 - 1.6568 1.00 4170 142 0.2584 0.2754 REMARK 3 10 1.6568 - 1.5997 1.00 4146 140 0.2757 0.2742 REMARK 3 11 1.5997 - 1.5497 1.00 4126 141 0.3024 0.3161 REMARK 3 12 1.5497 - 1.5054 1.00 4189 142 0.3371 0.3375 REMARK 3 13 1.5054 - 1.4658 0.99 4095 139 0.3603 0.3712 REMARK 3 14 1.4658 - 1.4301 0.72 2978 103 0.4216 0.4177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.209 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2782 REMARK 3 ANGLE : 0.714 3807 REMARK 3 CHIRALITY : 0.072 399 REMARK 3 PLANARITY : 0.004 509 REMARK 3 DIHEDRAL : 11.405 1005 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1287 -3.7128 14.9651 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.1994 REMARK 3 T33: 0.1294 T12: -0.0270 REMARK 3 T13: 0.0333 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 3.2283 L22: 7.2394 REMARK 3 L33: 6.9622 L12: 0.4360 REMARK 3 L13: 0.9844 L23: 4.6362 REMARK 3 S TENSOR REMARK 3 S11: 0.0708 S12: -0.1960 S13: 0.0856 REMARK 3 S21: 0.1741 S22: -0.0929 S23: 0.0060 REMARK 3 S31: 0.0980 S32: -0.2645 S33: 0.0788 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6583 0.5043 -1.9653 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1744 REMARK 3 T33: 0.1964 T12: -0.0347 REMARK 3 T13: -0.0223 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.1302 L22: 1.1595 REMARK 3 L33: 5.5306 L12: 0.0748 REMARK 3 L13: -1.3385 L23: -0.7039 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.0871 S13: 0.0777 REMARK 3 S21: -0.0832 S22: 0.1676 S23: 0.1980 REMARK 3 S31: -0.3130 S32: -0.6696 S33: -0.2253 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1655 6.4976 -24.4336 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: 0.2295 REMARK 3 T33: 0.1270 T12: -0.0181 REMARK 3 T13: -0.0039 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 9.7317 L22: 7.2515 REMARK 3 L33: 5.4947 L12: 1.0349 REMARK 3 L13: -0.3126 L23: 2.6277 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0847 S13: 0.2853 REMARK 3 S21: -0.2066 S22: 0.0081 S23: 0.0671 REMARK 3 S31: -0.3479 S32: -0.0579 S33: -0.0106 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6815 10.3831 -14.2940 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.1876 REMARK 3 T33: 0.1642 T12: -0.0167 REMARK 3 T13: 0.0203 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.4982 L22: 2.5593 REMARK 3 L33: 3.1479 L12: 0.7761 REMARK 3 L13: 0.5703 L23: 0.5063 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.1623 S13: 0.1388 REMARK 3 S21: -0.1874 S22: 0.0837 S23: -0.0789 REMARK 3 S31: -0.5798 S32: 0.1196 S33: -0.0160 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3517 9.0677 2.4937 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.1415 REMARK 3 T33: 0.1483 T12: 0.0163 REMARK 3 T13: 0.0168 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 4.2638 L22: 4.7252 REMARK 3 L33: 5.1602 L12: -3.5632 REMARK 3 L13: 4.3093 L23: -4.7301 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: -0.0476 S13: 0.1346 REMARK 3 S21: -0.1051 S22: -0.0019 S23: 0.0775 REMARK 3 S31: -0.3369 S32: -0.1419 S33: -0.0255 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8937 7.2006 3.5473 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.1561 REMARK 3 T33: 0.1755 T12: -0.0102 REMARK 3 T13: 0.0272 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.9021 L22: 1.0219 REMARK 3 L33: 5.6665 L12: 0.2446 REMARK 3 L13: 1.2942 L23: -0.1250 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: 0.0107 S13: 0.0861 REMARK 3 S21: 0.0354 S22: 0.0216 S23: -0.0712 REMARK 3 S31: -0.6266 S32: 0.3287 S33: 0.0380 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0258 -16.9933 -16.6173 REMARK 3 T TENSOR REMARK 3 T11: 0.2819 T22: 0.1678 REMARK 3 T33: 0.2169 T12: -0.0318 REMARK 3 T13: -0.0301 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 6.6192 L22: 5.5635 REMARK 3 L33: 8.6603 L12: -4.2144 REMARK 3 L13: 1.7054 L23: -1.6210 REMARK 3 S TENSOR REMARK 3 S11: 0.4988 S12: 0.5703 S13: -0.4758 REMARK 3 S21: -0.6543 S22: -0.2452 S23: 0.1472 REMARK 3 S31: 0.9054 S32: 0.1922 S33: -0.3408 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7193 -5.9421 -0.0388 REMARK 3 T TENSOR REMARK 3 T11: 0.1011 T22: 0.1243 REMARK 3 T33: 0.1207 T12: -0.0109 REMARK 3 T13: 0.0120 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.2086 L22: 1.3260 REMARK 3 L33: 2.1751 L12: -0.0251 REMARK 3 L13: 0.2359 L23: 0.2385 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0191 S13: -0.0303 REMARK 3 S21: -0.0157 S22: 0.0236 S23: 0.0124 REMARK 3 S31: -0.0514 S32: 0.0933 S33: -0.0102 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5259 -1.7090 13.8949 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.5932 REMARK 3 T33: 0.2900 T12: -0.0373 REMARK 3 T13: -0.0845 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 5.7241 L22: 6.0804 REMARK 3 L33: 7.8604 L12: 4.1823 REMARK 3 L13: -6.6711 L23: -4.4839 REMARK 3 S TENSOR REMARK 3 S11: 0.1274 S12: -0.6055 S13: -0.2873 REMARK 3 S21: 0.3130 S22: -0.3591 S23: -0.2409 REMARK 3 S31: 0.2188 S32: 2.0818 S33: 0.3560 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6678 -1.2194 -8.5871 REMARK 3 T TENSOR REMARK 3 T11: 0.2654 T22: 0.3562 REMARK 3 T33: 0.2528 T12: -0.0074 REMARK 3 T13: 0.0145 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 5.1295 L22: 9.3286 REMARK 3 L33: 6.0407 L12: 5.1722 REMARK 3 L13: 4.4875 L23: 7.1052 REMARK 3 S TENSOR REMARK 3 S11: -0.1659 S12: 0.3646 S13: -0.1002 REMARK 3 S21: -0.4973 S22: 0.1634 S23: -0.2179 REMARK 3 S31: -0.0265 S32: 0.4441 S33: -0.0065 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292105710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.30178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CXI.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 21.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 85.25 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.1310 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.57 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.312 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES - SIZE RANGE 40-60UM X 3 UM X 3 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M LI2SO4, 0.1M TRIS PH 8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.95900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.96150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.94750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.96150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.95900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.94750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG1 REMARK 470 ARG A 53 NE CZ NH1 NH2 REMARK 470 GLN A 56 NE2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 ARG A 76 NH2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 GLN A 118 CD OE1 NE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 GLN A 144 NE2 REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 ASN A 303 ND2 REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 470 GLN A 318 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 131 OG1 THR A 133 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 667 O HOH A 687 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -108.15 -100.97 REMARK 500 HIS A 82 61.26 -101.69 REMARK 500 LYS A 97 -42.79 -134.92 REMARK 500 THR A 123 -5.85 77.68 REMARK 500 ASN A 230 -27.60 -153.58 REMARK 500 LEU A 288 -159.33 -90.38 REMARK 500 SER A 306 -49.40 -132.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 101.1 REMARK 620 3 HIS A 270 NE2 86.6 91.9 REMARK 620 4 ACV A 402 S17 93.3 87.7 179.6 REMARK 620 5 HOH A 610 O 160.4 97.8 87.6 92.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACV A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB DBREF 6ZAH A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET ACV A 402 46 HET FE2 A 403 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM FE2 FE (II) ION FORMUL 2 SO4 O4 S 2- FORMUL 3 ACV C14 H25 N3 O6 S FORMUL 4 FE2 FE 2+ FORMUL 5 HOH *192(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE2 A 403 1555 1555 2.18 LINK OD1 ASP A 216 FE FE2 A 403 1555 1555 2.03 LINK NE2 HIS A 270 FE FE2 A 403 1555 1555 2.22 LINK S17 ACV A 402 FE FE2 A 403 1555 1555 2.36 LINK FE FE2 A 403 O HOH A 610 1555 1555 2.07 CISPEP 1 ASP A 193 PRO A 194 0 1.40 SITE 1 AC1 3 ARG A 37 LYS A 208 ARG A 300 SITE 1 AC2 17 ARG A 87 TYR A 91 SER A 183 TYR A 189 SITE 2 AC2 17 PHE A 211 HIS A 214 ASP A 216 SER A 281 SITE 3 AC2 17 PHE A 285 FE2 A 403 HOH A 527 HOH A 544 SITE 4 AC2 17 HOH A 590 HOH A 610 HOH A 626 HOH A 631 SITE 5 AC2 17 HOH A 644 SITE 1 AC3 5 HIS A 214 ASP A 216 HIS A 270 ACV A 402 SITE 2 AC3 5 HOH A 610 CRYST1 41.918 75.895 101.923 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023856 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009811 0.00000