HEADER OXIDOREDUCTASE 05-JUN-20 6ZAJ TITLE ROOM TEMPERATURE XFEL ISOPENICILLIN N SYNTHASE STRUCTURE IN COMPLEX TITLE 2 WITH FE, O2 AND ACV AFTER EXPOSURE TO DIOXYGEN FOR 3000MS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: IPNA, IPS, AN2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM 554; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, OXYGEN BINDING, XFEL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.J.A.G.KAMPS,K.SUTHERLIN,C.PHARM,M.A.MCDONOUGH,T.M.LEISSING, AUTHOR 2 P.ALLER,A.BUTRYN,J.LINYARD,P.LANG,J.BREM,F.D.FULLER,A.BATYUK, AUTHOR 3 M.S.HUNTER,I.PETTINATI,I.J.CLIFTON,R.ALONSO-MORI,S.GUL,I.YOUNG, AUTHOR 4 I.KIM,A.BHOWMICK,L.ORIORDAN,A.S.BREWSTER,T.D.W.CLARIDGE,N.K.SAUTER, AUTHOR 5 V.YACHANDRA,J.YANO,J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD REVDAT 3 24-JAN-24 6ZAJ 1 REMARK REVDAT 2 01-SEP-21 6ZAJ 1 JRNL REVDAT 1 09-JUN-21 6ZAJ 0 JRNL AUTH P.RABE,J.J.A.G.KAMPS,K.D.SUTHERLIN,J.D.S.LINYARD,P.ALLER, JRNL AUTH 2 C.C.PHAM,H.MAKITA,I.CLIFTON,M.A.MCDONOUGH,T.M.LEISSING, JRNL AUTH 3 D.SHUTIN,P.A.LANG,A.BUTRYN,J.BREM,S.GUL,F.D.FULLER,I.S.KIM, JRNL AUTH 4 M.H.CHEAH,T.FRANSSON,A.BHOWMICK,I.D.YOUNG,L.O'RIORDAN, JRNL AUTH 5 A.S.BREWSTER,I.PETTINATI,M.DOYLE,Y.JOTI,S.OWADA,K.TONO, JRNL AUTH 6 A.BATYUK,M.S.HUNTER,R.ALONSO-MORI,U.BERGMANN,R.L.OWEN, JRNL AUTH 7 N.K.SAUTER,T.D.W.CLARIDGE,C.V.ROBINSON,V.K.YACHANDRA,J.YANO, JRNL AUTH 8 J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD JRNL TITL X-RAY FREE-ELECTRON LASER STUDIES REVEAL CORRELATED MOTION JRNL TITL 2 DURING ISOPENICILLIN N SYNTHASE CATALYSIS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34417180 JRNL DOI 10.1126/SCIADV.ABH0250 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.332 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 49646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.027 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.1283 - 3.6815 1.00 3641 153 0.1386 0.1376 REMARK 3 2 3.6815 - 2.9246 1.00 3463 145 0.1499 0.1836 REMARK 3 3 2.9246 - 2.5556 1.00 3448 145 0.1723 0.2067 REMARK 3 4 2.5556 - 2.3223 1.00 3416 142 0.1742 0.2156 REMARK 3 5 2.3223 - 2.1560 1.00 3385 143 0.1609 0.1922 REMARK 3 6 2.1560 - 2.0290 1.00 3398 143 0.1732 0.1975 REMARK 3 7 2.0290 - 1.9274 1.00 3373 140 0.1917 0.2180 REMARK 3 8 1.9274 - 1.8436 1.00 3381 143 0.2203 0.2651 REMARK 3 9 1.8436 - 1.7727 1.00 3393 142 0.2564 0.2738 REMARK 3 10 1.7727 - 1.7115 1.00 3358 142 0.2767 0.2894 REMARK 3 11 1.7115 - 1.6580 1.00 3350 139 0.3039 0.2774 REMARK 3 12 1.6580 - 1.6106 1.00 3318 139 0.3203 0.3320 REMARK 3 13 1.6106 - 1.5683 1.00 3356 141 0.3480 0.3536 REMARK 3 14 1.5683 - 1.5301 1.00 3367 142 0.3672 0.3783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.219 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2753 REMARK 3 ANGLE : 0.932 3764 REMARK 3 CHIRALITY : 0.060 396 REMARK 3 PLANARITY : 0.007 501 REMARK 3 DIHEDRAL : 9.234 1622 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2461 -2.6677 15.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.2173 REMARK 3 T33: 0.1493 T12: -0.0326 REMARK 3 T13: 0.0399 T23: 0.0539 REMARK 3 L TENSOR REMARK 3 L11: 2.9329 L22: 7.4776 REMARK 3 L33: 8.8886 L12: -0.0606 REMARK 3 L13: 0.9657 L23: 5.7580 REMARK 3 S TENSOR REMARK 3 S11: 0.0243 S12: -0.2368 S13: 0.0991 REMARK 3 S21: 0.2474 S22: -0.0855 S23: 0.0507 REMARK 3 S31: 0.0216 S32: -0.2997 S33: 0.1081 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6967 0.5305 -1.9272 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.3081 REMARK 3 T33: 0.2289 T12: -0.0053 REMARK 3 T13: -0.0532 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.0128 L22: 0.8852 REMARK 3 L33: 3.6379 L12: 0.5961 REMARK 3 L13: -1.6018 L23: -0.3804 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.2070 S13: 0.1675 REMARK 3 S21: -0.1697 S22: 0.1697 S23: 0.2357 REMARK 3 S31: -0.2564 S32: -0.7608 S33: -0.2126 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0977 6.6038 -24.3679 REMARK 3 T TENSOR REMARK 3 T11: 0.2673 T22: 0.2129 REMARK 3 T33: 0.1652 T12: -0.0113 REMARK 3 T13: -0.0202 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 6.8023 L22: 4.6987 REMARK 3 L33: 7.5959 L12: 0.4691 REMARK 3 L13: -3.5658 L23: 3.3749 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: 0.2634 S13: 0.3648 REMARK 3 S21: -0.0688 S22: 0.0538 S23: 0.0432 REMARK 3 S31: -0.3561 S32: 0.0306 S33: -0.1406 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8626 6.4096 -14.9517 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.2112 REMARK 3 T33: 0.1631 T12: -0.0012 REMARK 3 T13: 0.0098 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 1.9912 L22: 7.4715 REMARK 3 L33: 3.7047 L12: 2.0329 REMARK 3 L13: 0.5675 L23: 2.0124 REMARK 3 S TENSOR REMARK 3 S11: -0.0873 S12: 0.2253 S13: 0.0497 REMARK 3 S21: -0.2882 S22: 0.1436 S23: -0.0221 REMARK 3 S31: -0.3411 S32: 0.1708 S33: -0.0610 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6077 15.3982 -13.1349 REMARK 3 T TENSOR REMARK 3 T11: 0.4243 T22: 0.2112 REMARK 3 T33: 0.1828 T12: -0.0007 REMARK 3 T13: 0.0428 T23: 0.0682 REMARK 3 L TENSOR REMARK 3 L11: 7.0324 L22: 3.1037 REMARK 3 L33: 3.4866 L12: 1.3573 REMARK 3 L13: 0.7854 L23: 0.2258 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.5214 S13: 0.1402 REMARK 3 S21: -0.0182 S22: 0.1102 S23: 0.1000 REMARK 3 S31: -0.9243 S32: 0.0235 S33: -0.0186 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2971 9.6606 5.1143 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.1378 REMARK 3 T33: 0.1806 T12: -0.0040 REMARK 3 T13: 0.0357 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.5163 L22: 3.2959 REMARK 3 L33: 7.3808 L12: -1.3059 REMARK 3 L13: 1.2169 L23: -3.0239 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: -0.1110 S13: 0.1100 REMARK 3 S21: 0.0200 S22: 0.0519 S23: -0.0590 REMARK 3 S31: -0.7280 S32: -0.0282 S33: -0.0306 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2128 -7.2662 -3.3491 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.1578 REMARK 3 T33: 0.1564 T12: -0.0064 REMARK 3 T13: 0.0106 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.2145 L22: 1.2900 REMARK 3 L33: 2.3740 L12: -0.0544 REMARK 3 L13: 0.4298 L23: 0.0462 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: 0.0403 S13: -0.1126 REMARK 3 S21: -0.0858 S22: 0.0224 S23: 0.0212 REMARK 3 S31: 0.0644 S32: 0.0659 S33: -0.0472 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2518 -1.7131 13.9698 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.5844 REMARK 3 T33: 0.3209 T12: -0.0074 REMARK 3 T13: -0.0539 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 9.2513 L22: 8.0109 REMARK 3 L33: 6.9758 L12: 5.7931 REMARK 3 L13: -7.8867 L23: -4.2413 REMARK 3 S TENSOR REMARK 3 S11: 0.1200 S12: -0.6892 S13: -0.3345 REMARK 3 S21: 0.2569 S22: -0.2289 S23: 0.0255 REMARK 3 S31: 0.3406 S32: 1.8610 S33: 0.1523 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6923 -0.8915 -8.5214 REMARK 3 T TENSOR REMARK 3 T11: 0.4423 T22: 0.4604 REMARK 3 T33: 0.3431 T12: -0.0094 REMARK 3 T13: 0.0238 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 8.2205 L22: 4.9013 REMARK 3 L33: 7.3414 L12: 5.4061 REMARK 3 L13: 6.0633 L23: 5.5818 REMARK 3 S TENSOR REMARK 3 S11: -0.2609 S12: 0.8064 S13: -0.4280 REMARK 3 S21: -0.8868 S22: 0.4720 S23: -0.1464 REMARK 3 S31: 0.0522 S32: 0.8034 S33: -0.2441 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292107643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.30179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CXI.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49972 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 21.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 90.71 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.48 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.679 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES - SIZE RANGE 40-60UM X 3 UM X 3 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M LI2SO4, 0.1 M TRIS PH 8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.94250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.94850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.81950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.94850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.94250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.81950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG2 REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 ARG A 76 NH1 REMARK 470 LYS A 80 CD CE NZ REMARK 470 GLN A 83 OE1 REMARK 470 ASP A 84 CG OD1 OD2 REMARK 470 ASP A 113 OD1 OD2 REMARK 470 LYS A 120 CD CE NZ REMARK 470 ASP A 131 OD2 REMARK 470 LYS A 134 CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 ASP A 295 OD2 REMARK 470 ASN A 303 ND2 REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 470 ASP A 307 CG OD1 OD2 REMARK 470 ASN A 319 ND2 REMARK 470 LYS A 327 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -110.29 -99.37 REMARK 500 HIS A 82 62.32 -100.41 REMARK 500 LYS A 97 -46.47 -135.63 REMARK 500 THR A 123 -0.27 74.98 REMARK 500 ASN A 230 -24.06 -150.83 REMARK 500 LEU A 288 -156.94 -89.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ACV A 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 95.7 REMARK 620 3 HIS A 270 NE2 87.5 89.5 REMARK 620 4 ACV A 402 S17 89.8 79.6 168.4 REMARK 620 5 OXY A 403 O2 90.6 173.6 90.7 100.6 REMARK 620 6 HOH A 540 O 171.6 92.6 93.0 91.3 81.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACV A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB DBREF 6ZAJ A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET ACV A 402 21 HET OXY A 403 2 HET FE2 A 404 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM OXY OXYGEN MOLECULE HETNAM FE2 FE (II) ION FORMUL 2 SO4 O4 S 2- FORMUL 3 ACV C14 H25 N3 O6 S FORMUL 4 OXY O2 FORMUL 5 FE2 FE 2+ FORMUL 6 HOH *163(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE2 A 404 1555 1555 2.16 LINK OD1 ASP A 216 FE FE2 A 404 1555 1555 2.05 LINK NE2 HIS A 270 FE FE2 A 404 1555 1555 2.18 LINK S17 ACV A 402 FE FE2 A 404 1555 1555 2.42 LINK O2 OXY A 403 FE FE2 A 404 1555 1555 2.03 LINK FE FE2 A 404 O HOH A 540 1555 1555 2.09 CISPEP 1 ASP A 193 PRO A 194 0 0.01 SITE 1 AC1 3 ARG A 37 LYS A 208 ARG A 300 SITE 1 AC2 14 ARG A 87 TYR A 91 SER A 183 TYR A 189 SITE 2 AC2 14 PHE A 211 HIS A 214 ASP A 216 SER A 281 SITE 3 AC2 14 PHE A 285 OXY A 403 FE2 A 404 HOH A 514 SITE 4 AC2 14 HOH A 532 HOH A 622 SITE 1 AC3 5 HIS A 214 HIS A 270 ACV A 402 FE2 A 404 SITE 2 AC3 5 HOH A 540 SITE 1 AC4 6 HIS A 214 ASP A 216 HIS A 270 ACV A 402 SITE 2 AC4 6 OXY A 403 HOH A 540 CRYST1 41.885 75.639 101.897 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009814 0.00000