HEADER OXIDOREDUCTASE 05-JUN-20 6ZAL TITLE ROOM TEMPERATURE XFEL ISOPENICILLIN N SYNTHASE STRUCTURE IN COMPLEX TITLE 2 WITH FE AND ACV AFTER EXPOSURE TO DIOXYGEN FOR 500MS WITHOUT TITLE 3 GLYCEROL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: IPNA, IPS, AN2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, OXYGEN BINDING, XFEL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.J.A.G.KAMPS,K.SUTHERLIN,C.PHARM,M.A.MCDONOUGH,T.M.LEISSING, AUTHOR 2 P.ALLER,A.BUTRYN,J.LINYARD,P.LANG,J.BREM,F.D.FULLER,A.BATYUK, AUTHOR 3 M.S.HUNTER,I.PETTINATI,I.J.CLIFTON,R.ALONSO-MORI,S.GUL,I.YOUNG, AUTHOR 4 I.KIM,A.BHOWMICK,L.ORIORDAN,A.S.BREWSTER,T.D.W.CLARIDGE,N.K.SAUTER, AUTHOR 5 V.YACHANDRA,J.YANO,J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD REVDAT 3 24-JAN-24 6ZAL 1 REMARK REVDAT 2 01-SEP-21 6ZAL 1 JRNL REVDAT 1 09-JUN-21 6ZAL 0 JRNL AUTH P.RABE,J.J.A.G.KAMPS,K.D.SUTHERLIN,J.D.S.LINYARD,P.ALLER, JRNL AUTH 2 C.C.PHAM,H.MAKITA,I.CLIFTON,M.A.MCDONOUGH,T.M.LEISSING, JRNL AUTH 3 D.SHUTIN,P.A.LANG,A.BUTRYN,J.BREM,S.GUL,F.D.FULLER,I.S.KIM, JRNL AUTH 4 M.H.CHEAH,T.FRANSSON,A.BHOWMICK,I.D.YOUNG,L.O'RIORDAN, JRNL AUTH 5 A.S.BREWSTER,I.PETTINATI,M.DOYLE,Y.JOTI,S.OWADA,K.TONO, JRNL AUTH 6 A.BATYUK,M.S.HUNTER,R.ALONSO-MORI,U.BERGMANN,R.L.OWEN, JRNL AUTH 7 N.K.SAUTER,T.D.W.CLARIDGE,C.V.ROBINSON,V.K.YACHANDRA,J.YANO, JRNL AUTH 8 J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD JRNL TITL X-RAY FREE-ELECTRON LASER STUDIES REVEAL CORRELATED MOTION JRNL TITL 2 DURING ISOPENICILLIN N SYNTHASE CATALYSIS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34417180 JRNL DOI 10.1126/SCIADV.ABH0250 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.327 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.805 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7818 - 4.4086 0.99 2103 154 0.1472 0.1942 REMARK 3 2 4.4086 - 3.5000 1.00 1990 147 0.1237 0.1338 REMARK 3 3 3.5000 - 3.0578 1.00 1987 144 0.1508 0.1918 REMARK 3 4 3.0578 - 2.7783 1.00 1959 144 0.1637 0.2187 REMARK 3 5 2.7783 - 2.5792 1.00 1958 143 0.1841 0.2634 REMARK 3 6 2.5792 - 2.4271 1.00 1942 142 0.1836 0.2339 REMARK 3 7 2.4271 - 2.3056 1.00 1933 140 0.1793 0.2339 REMARK 3 8 2.3056 - 2.2053 1.00 1922 140 0.1732 0.2169 REMARK 3 9 2.2053 - 2.1204 1.00 1947 143 0.1892 0.2367 REMARK 3 10 2.1204 - 2.0472 1.00 1931 142 0.2097 0.2758 REMARK 3 11 2.0472 - 1.9832 1.00 1918 139 0.2321 0.2769 REMARK 3 12 1.9832 - 1.9265 1.00 1921 140 0.2456 0.2658 REMARK 3 13 1.9265 - 1.8758 0.99 1916 140 0.2765 0.3165 REMARK 3 14 1.8758 - 1.8301 0.99 1894 137 0.3104 0.3363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.212 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2741 REMARK 3 ANGLE : 0.634 3751 REMARK 3 CHIRALITY : 0.048 398 REMARK 3 PLANARITY : 0.004 498 REMARK 3 DIHEDRAL : 8.723 1614 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4745 -2.2990 8.5743 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.1947 REMARK 3 T33: 0.1930 T12: -0.0227 REMARK 3 T13: 0.0196 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.9366 L22: 0.9737 REMARK 3 L33: 4.7765 L12: 0.0630 REMARK 3 L13: 1.2388 L23: -0.1477 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: -0.0044 S13: 0.0148 REMARK 3 S21: 0.0368 S22: 0.0494 S23: 0.1215 REMARK 3 S31: -0.1060 S32: -0.2898 S33: -0.0083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3096 6.2516 -24.0216 REMARK 3 T TENSOR REMARK 3 T11: 0.2538 T22: 0.2208 REMARK 3 T33: 0.1598 T12: 0.0129 REMARK 3 T13: -0.0296 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 9.3438 L22: 4.6614 REMARK 3 L33: 7.0502 L12: 1.7086 REMARK 3 L13: -2.7727 L23: 0.4751 REMARK 3 S TENSOR REMARK 3 S11: 0.2822 S12: 0.3177 S13: 0.1988 REMARK 3 S21: -0.1190 S22: 0.0151 S23: 0.1728 REMARK 3 S31: -0.3335 S32: -0.2785 S33: -0.2824 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9034 6.3576 -15.2793 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.2177 REMARK 3 T33: 0.1654 T12: -0.0078 REMARK 3 T13: 0.0273 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.0663 L22: 6.2237 REMARK 3 L33: 3.5891 L12: 0.9981 REMARK 3 L13: 0.5777 L23: 1.8439 REMARK 3 S TENSOR REMARK 3 S11: -0.0368 S12: 0.1969 S13: -0.0285 REMARK 3 S21: -0.3481 S22: 0.1051 S23: -0.1828 REMARK 3 S31: -0.3710 S32: 0.0737 S33: -0.0948 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3092 15.4410 -13.1519 REMARK 3 T TENSOR REMARK 3 T11: 0.4208 T22: 0.2304 REMARK 3 T33: 0.1877 T12: -0.0122 REMARK 3 T13: 0.0625 T23: 0.0774 REMARK 3 L TENSOR REMARK 3 L11: 6.5544 L22: 3.0886 REMARK 3 L33: 3.5044 L12: 1.4532 REMARK 3 L13: 0.5994 L23: 0.2417 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.5438 S13: 0.3868 REMARK 3 S21: -0.0636 S22: 0.1274 S23: 0.0809 REMARK 3 S31: -0.9417 S32: 0.0962 S33: 0.0177 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0015 9.5513 5.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.2201 T22: 0.1253 REMARK 3 T33: 0.2085 T12: -0.0033 REMARK 3 T13: 0.0305 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.9346 L22: 2.1375 REMARK 3 L33: 7.3290 L12: -0.5149 REMARK 3 L13: 0.5806 L23: -2.1381 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: -0.1183 S13: 0.1532 REMARK 3 S21: -0.0279 S22: -0.0227 S23: -0.1101 REMARK 3 S31: -0.6278 S32: -0.0170 S33: 0.0745 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0717 -6.6644 -1.3122 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.1690 REMARK 3 T33: 0.1638 T12: -0.0104 REMARK 3 T13: 0.0187 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.4650 L22: 1.5543 REMARK 3 L33: 2.6799 L12: -0.0556 REMARK 3 L13: 0.4099 L23: 0.1867 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.0134 S13: -0.1040 REMARK 3 S21: -0.0519 S22: 0.0083 S23: -0.0588 REMARK 3 S31: 0.0273 S32: 0.1975 S33: -0.0410 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6806 -1.0996 -8.5003 REMARK 3 T TENSOR REMARK 3 T11: 0.3391 T22: 0.4772 REMARK 3 T33: 0.3146 T12: -0.0018 REMARK 3 T13: 0.0232 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 8.2594 L22: 9.2676 REMARK 3 L33: 5.0631 L12: 6.4617 REMARK 3 L13: 5.4796 L23: 6.7353 REMARK 3 S TENSOR REMARK 3 S11: -0.2972 S12: 0.7931 S13: -0.2288 REMARK 3 S21: -0.6868 S22: 0.5261 S23: -0.3009 REMARK 3 S31: 0.0415 S32: 0.8878 S33: -0.1785 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292107142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.31145 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX170-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CXI.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29482 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 38.782 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 93.13 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 61.2740 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 34.65 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES - SIZE RANGE 40-60UM X 3 UM X 3 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.96100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.06850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.76450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.06850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.96100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.76450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 OG REMARK 470 VAL A 4 CG1 CG2 REMARK 470 GLN A 52 CD OE1 NE2 REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ARG A 76 CZ NH1 NH2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 GLN A 144 OE1 NE2 REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 ASN A 303 CG OD1 ND2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ASP A 307 OD1 OD2 REMARK 470 ARG A 308 NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 131 HG1 THR A 133 1.55 REMARK 500 OD2 ASP A 131 OG1 THR A 133 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -106.60 -96.88 REMARK 500 HIS A 82 61.90 -102.87 REMARK 500 LYS A 97 -47.73 -132.77 REMARK 500 ASN A 230 -28.86 -151.59 REMARK 500 LEU A 288 -157.36 -87.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 98.2 REMARK 620 3 HIS A 270 NE2 87.6 89.4 REMARK 620 4 ACV A 402 S17 93.2 82.9 172.3 REMARK 620 5 OXY A 403 O1 85.4 170.1 100.0 87.7 REMARK 620 6 HOH A 534 O 167.7 93.2 87.9 92.7 84.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACV A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB DBREF 6ZAL A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET ACV A 402 55 HET OXY A 403 2 HET FE2 A 404 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM OXY OXYGEN MOLECULE HETNAM FE2 FE (II) ION FORMUL 2 SO4 O4 S 2- FORMUL 3 ACV C14 H25 N3 O6 S FORMUL 4 OXY O2 FORMUL 5 FE2 FE 2+ FORMUL 6 HOH *151(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 MET A 63 1 14 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N LEU A 223 O LEU A 250 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE2 A 404 1555 1555 2.16 LINK OD1 ASP A 216 FE FE2 A 404 1555 1555 2.07 LINK NE2 HIS A 270 FE FE2 A 404 1555 1555 2.25 LINK S17 ACV A 402 FE FE2 A 404 1555 1555 2.34 LINK O1 BOXY A 403 FE FE2 A 404 1555 1555 1.98 LINK FE FE2 A 404 O HOH A 534 1555 1555 2.23 CISPEP 1 ASP A 193 PRO A 194 0 -1.78 SITE 1 AC1 3 ARG A 37 LYS A 208 ARG A 300 SITE 1 AC2 17 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC2 17 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC2 17 SER A 281 PHE A 285 OXY A 403 FE2 A 404 SITE 4 AC2 17 HOH A 509 HOH A 512 HOH A 582 HOH A 606 SITE 5 AC2 17 HOH A 617 SITE 1 AC3 5 HIS A 214 HIS A 270 ACV A 402 FE2 A 404 SITE 2 AC3 5 HOH A 534 SITE 1 AC4 6 HIS A 214 ASP A 216 HIS A 270 ACV A 402 SITE 2 AC4 6 OXY A 403 HOH A 534 CRYST1 41.922 75.529 102.137 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009791 0.00000