HEADER OXIDOREDUCTASE 05-JUN-20 6ZAN TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE, THE OXYGEN SURROGATE NO TITLE 2 AND ACV. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: IPNA, IPS, AN2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, OXYGEN BINDING, XFEL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.J.A.G.KAMPS,K.SUTHERLIN,C.PHARM,M.A.MCDONOUGH,T.M.LEISSING, AUTHOR 2 P.ALLER,A.BUTRYN,J.LINYARD,P.LANG,J.BREM,F.D.FULLER,A.BATYUK, AUTHOR 3 M.S.HUNTER,I.PETTINATI,I.J.CLIFTON,R.ALONSO-MORI,S.GUL,I.YOUNG, AUTHOR 4 I.KIM,A.BHOWMICK,L.ORIORDAN,A.S.BREWSTER,T.D.W.CLARIDGE,N.K.SAUTER, AUTHOR 5 V.YACHANDRA,J.YANO,J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD REVDAT 3 24-JAN-24 6ZAN 1 REMARK REVDAT 2 01-SEP-21 6ZAN 1 JRNL REVDAT 1 09-JUN-21 6ZAN 0 JRNL AUTH P.RABE,J.J.A.G.KAMPS,K.D.SUTHERLIN,J.D.S.LINYARD,P.ALLER, JRNL AUTH 2 C.C.PHAM,H.MAKITA,I.CLIFTON,M.A.MCDONOUGH,T.M.LEISSING, JRNL AUTH 3 D.SHUTIN,P.A.LANG,A.BUTRYN,J.BREM,S.GUL,F.D.FULLER,I.S.KIM, JRNL AUTH 4 M.H.CHEAH,T.FRANSSON,A.BHOWMICK,I.D.YOUNG,L.O'RIORDAN, JRNL AUTH 5 A.S.BREWSTER,I.PETTINATI,M.DOYLE,Y.JOTI,S.OWADA,K.TONO, JRNL AUTH 6 A.BATYUK,M.S.HUNTER,R.ALONSO-MORI,U.BERGMANN,R.L.OWEN, JRNL AUTH 7 N.K.SAUTER,T.D.W.CLARIDGE,C.V.ROBINSON,V.K.YACHANDRA,J.YANO, JRNL AUTH 8 J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD JRNL TITL X-RAY FREE-ELECTRON LASER STUDIES REVEAL CORRELATED MOTION JRNL TITL 2 DURING ISOPENICILLIN N SYNTHASE CATALYSIS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34417180 JRNL DOI 10.1126/SCIADV.ABH0250 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.9280 - 3.8921 1.00 2956 169 0.1587 0.1764 REMARK 3 2 3.8921 - 3.0893 1.00 2832 146 0.1391 0.1802 REMARK 3 3 3.0893 - 2.6988 1.00 2812 142 0.1585 0.1616 REMARK 3 4 2.6988 - 2.4520 1.00 2771 137 0.1473 0.1683 REMARK 3 5 2.4520 - 2.2763 1.00 2764 126 0.1442 0.1597 REMARK 3 6 2.2763 - 2.1420 1.00 2765 133 0.1410 0.1608 REMARK 3 7 2.1420 - 2.0348 1.00 2776 120 0.1418 0.1781 REMARK 3 8 2.0348 - 1.9462 1.00 2732 161 0.1445 0.1629 REMARK 3 9 1.9462 - 1.8713 1.00 2737 138 0.1529 0.1572 REMARK 3 10 1.8713 - 1.8067 1.00 2731 140 0.1617 0.1737 REMARK 3 11 1.8067 - 1.7502 1.00 2727 158 0.1694 0.1903 REMARK 3 12 1.7502 - 1.7002 1.00 2693 145 0.1785 0.2306 REMARK 3 13 1.7002 - 1.6554 1.00 2722 141 0.1886 0.2094 REMARK 3 14 1.6554 - 1.6150 1.00 2730 134 0.1973 0.2271 REMARK 3 15 1.6150 - 1.5783 1.00 2671 170 0.2052 0.2265 REMARK 3 16 1.5783 - 1.5447 1.00 2743 125 0.2079 0.2638 REMARK 3 17 1.5447 - 1.5138 1.00 2694 142 0.2194 0.2320 REMARK 3 18 1.5138 - 1.4852 1.00 2713 130 0.2218 0.2643 REMARK 3 19 1.4852 - 1.4587 1.00 2726 134 0.2510 0.2869 REMARK 3 20 1.4587 - 1.4340 1.00 2729 118 0.2549 0.2816 REMARK 3 21 1.4340 - 1.4108 1.00 2693 156 0.2729 0.2732 REMARK 3 22 1.4108 - 1.3891 1.00 2688 138 0.2902 0.2920 REMARK 3 23 1.3891 - 1.3687 1.00 2696 148 0.2901 0.3055 REMARK 3 24 1.3687 - 1.3500 0.97 2615 138 0.3008 0.2921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3001 REMARK 3 ANGLE : 0.866 4109 REMARK 3 CHIRALITY : 0.074 427 REMARK 3 PLANARITY : 0.006 550 REMARK 3 DIHEDRAL : 17.248 1093 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7311 -4.6432 11.9353 REMARK 3 T TENSOR REMARK 3 T11: 0.0748 T22: 0.1562 REMARK 3 T33: 0.1247 T12: -0.0205 REMARK 3 T13: 0.0121 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 1.8662 L22: 4.6030 REMARK 3 L33: 5.5037 L12: -0.4928 REMARK 3 L13: 0.1704 L23: 2.7494 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.0779 S13: -0.0801 REMARK 3 S21: 0.1539 S22: -0.0292 S23: 0.2999 REMARK 3 S31: 0.0853 S32: -0.2813 S33: 0.0801 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6496 -1.7414 12.3704 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.1059 REMARK 3 T33: 0.0982 T12: -0.0155 REMARK 3 T13: 0.0086 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 0.9242 L22: 0.4100 REMARK 3 L33: 3.8341 L12: 0.0477 REMARK 3 L13: 0.9107 L23: -0.0186 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.1042 S13: -0.0313 REMARK 3 S21: 0.0433 S22: -0.0006 S23: 0.0031 REMARK 3 S31: -0.0636 S32: -0.1537 S33: -0.0050 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9323 5.4375 -16.3032 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.0724 REMARK 3 T33: 0.1280 T12: 0.0259 REMARK 3 T13: -0.0199 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.5040 L22: 0.7434 REMARK 3 L33: 4.9560 L12: 0.1373 REMARK 3 L13: -1.7361 L23: -0.1989 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: 0.2316 S13: 0.0145 REMARK 3 S21: -0.0227 S22: 0.0449 S23: 0.0936 REMARK 3 S31: -0.2329 S32: -0.3491 S33: -0.0506 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5064 10.1586 -14.0486 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.0994 REMARK 3 T33: 0.0808 T12: -0.0016 REMARK 3 T13: 0.0158 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.4366 L22: 1.5993 REMARK 3 L33: 2.2269 L12: 0.5544 REMARK 3 L13: 0.1397 L23: -0.1626 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: 0.1008 S13: 0.0476 REMARK 3 S21: -0.0534 S22: 0.0554 S23: -0.0461 REMARK 3 S31: -0.2770 S32: 0.0297 S33: 0.0025 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0186 9.5126 5.4156 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.0801 REMARK 3 T33: 0.1038 T12: -0.0019 REMARK 3 T13: 0.0123 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.7775 L22: 1.6541 REMARK 3 L33: 5.3964 L12: -0.6717 REMARK 3 L13: 1.1870 L23: -2.0708 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.1019 S13: 0.0231 REMARK 3 S21: 0.0265 S22: 0.0649 S23: 0.0166 REMARK 3 S31: -0.4241 S32: -0.0990 S33: -0.0134 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8149 -8.5866 -4.2928 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1162 REMARK 3 T33: 0.1311 T12: -0.0052 REMARK 3 T13: 0.0110 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.9841 L22: 0.8417 REMARK 3 L33: 1.8924 L12: -0.1175 REMARK 3 L13: 0.7136 L23: 0.0392 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.0354 S13: -0.1159 REMARK 3 S21: -0.0667 S22: -0.0034 S23: 0.0211 REMARK 3 S31: 0.1036 S32: 0.0177 S33: -0.0603 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9609 2.2697 10.2971 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.2430 REMARK 3 T33: 0.1605 T12: -0.0493 REMARK 3 T13: -0.0117 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 2.1713 L22: 1.5573 REMARK 3 L33: 3.7142 L12: -0.0150 REMARK 3 L13: 0.7596 L23: -0.8722 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: -0.1527 S13: -0.0889 REMARK 3 S21: 0.0888 S22: -0.1551 S23: -0.2475 REMARK 3 S31: -0.0264 S32: 0.5466 S33: 0.1194 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9290 -0.3393 -8.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.3258 T22: 0.2913 REMARK 3 T33: 0.2300 T12: -0.0320 REMARK 3 T13: -0.0199 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 8.2400 L22: 4.3169 REMARK 3 L33: 3.6261 L12: 3.5515 REMARK 3 L13: 3.4322 L23: 3.8350 REMARK 3 S TENSOR REMARK 3 S11: -0.1470 S12: 0.8733 S13: -0.5933 REMARK 3 S21: -0.7867 S22: 0.3891 S23: -0.0158 REMARK 3 S31: 0.0078 S32: 0.2973 S33: -0.2200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292105663. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69251 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.349 REMARK 200 RESOLUTION RANGE LOW (A) : 74.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 4.19400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1M TRIS PH8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.61800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.55700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.20200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.55700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.61800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.20200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CD CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 ASP A 178 OD2 REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CE NZ REMARK 470 GLU A 301 OE2 REMARK 470 LYS A 305 CE NZ REMARK 470 LYS A 327 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 331 O HOH A 503 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 618 O HOH A 766 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -109.62 -99.80 REMARK 500 HIS A 82 57.53 -107.34 REMARK 500 LYS A 97 -44.83 -133.89 REMARK 500 THR A 123 -5.29 79.28 REMARK 500 ASN A 230 -27.73 -152.90 REMARK 500 PRO A 299 0.35 -69.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 97.1 REMARK 620 3 HIS A 270 NE2 87.7 88.2 REMARK 620 4 ACV A 406 S17 90.8 79.9 167.7 REMARK 620 5 NO A 407 N 89.9 172.6 94.6 97.6 REMARK 620 6 HOH A 566 O 173.1 87.9 87.7 94.8 85.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACV A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB REMARK 900 RELATED ID: 1BKO RELATED DB: PDB DBREF 6ZAN A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET FE A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET ACV A 406 46 HET NO A 407 2 HETNAM FE FE (III) ION HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM NO NITRIC OXIDE HETSYN NO NITROGEN MONOXIDE FORMUL 2 FE FE 3+ FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 ACV C14 H25 N3 O6 S FORMUL 8 NO N O FORMUL 9 HOH *317(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 MET A 63 1 14 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 TYR A 313 GLY A 329 1 17 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O ILE A 251 N PHE A 42 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 SHEET 1 AA3 2 VAL A 293 ILE A 294 0 SHEET 2 AA3 2 LEU A 311 SER A 312 -1 O LEU A 311 N ILE A 294 LINK NE2 HIS A 214 FE FE A 401 1555 1555 2.15 LINK OD1 ASP A 216 FE FE A 401 1555 1555 2.11 LINK NE2 HIS A 270 FE FE A 401 1555 1555 2.19 LINK FE FE A 401 S17AACV A 406 1555 1555 2.28 LINK FE FE A 401 N B NO A 407 1555 1555 1.94 LINK FE FE A 401 O HOH A 566 1555 1555 2.17 CISPEP 1 ASP A 193 PRO A 194 0 -0.52 SITE 1 AC1 6 HIS A 214 ASP A 216 HIS A 270 ACV A 406 SITE 2 AC1 6 NO A 407 HOH A 566 SITE 1 AC2 3 ARG A 27 HOH A 533 HOH A 581 SITE 1 AC3 5 ASP A 205 GLY A 206 ASN A 262 ARG A 308 SITE 2 AC3 5 HOH A 576 SITE 1 AC4 9 ARG A 53 GLN A 56 LYS A 57 GLU A 60 SITE 2 AC4 9 PRO A 122 GLN A 318 HOH A 536 HOH A 618 SITE 3 AC4 9 HOH A 700 SITE 1 AC5 4 ARG A 37 LYS A 208 TRP A 274 ARG A 300 SITE 1 AC6 18 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC6 18 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC6 18 SER A 281 PRO A 283 PHE A 285 FE A 401 SITE 4 AC6 18 NO A 407 HOH A 509 HOH A 525 HOH A 544 SITE 5 AC6 18 HOH A 644 HOH A 659 SITE 1 AC7 6 HIS A 214 HIS A 270 VAL A 272 FE A 401 SITE 2 AC7 6 ACV A 406 HOH A 566 CRYST1 41.236 74.404 101.114 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024251 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009890 0.00000