HEADER OXIDOREDUCTASE 05-JUN-20 6ZAP TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE, O2 AND ACV UNDER CRYO TITLE 2 CONDITIONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: IPNA, IPS, AN2622; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, OXYGEN BINDING, XFEL, TIME-RESOLVED KEYWDS 2 CRYSTALLOGRAPHY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.J.A.G.KAMPS,K.SUTHERLIN,C.PHARM,M.A.MCDONOUGH,T.M.LEISSING, AUTHOR 2 P.ALLER,A.BUTRYN,J.LINYARD,P.LANG,J.BREM,F.D.FULLER,A.BATYUK, AUTHOR 3 M.S.HUNTER,I.PETTINATI,I.J.CLIFTON,R.ALONSO-MORI,S.GUL,I.YOUNG, AUTHOR 4 I.KIM,A.BHOWMICK,L.ORIORDAN,A.S.BREWSTER,T.D.W.CLARIDGE,N.K.SAUTER, AUTHOR 5 V.YACHANDRA,J.YANO,J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD REVDAT 3 24-JAN-24 6ZAP 1 REMARK REVDAT 2 01-SEP-21 6ZAP 1 JRNL REVDAT 1 09-JUN-21 6ZAP 0 JRNL AUTH P.RABE,J.J.A.G.KAMPS,K.D.SUTHERLIN,J.D.S.LINYARD,P.ALLER, JRNL AUTH 2 C.C.PHAM,H.MAKITA,I.CLIFTON,M.A.MCDONOUGH,T.M.LEISSING, JRNL AUTH 3 D.SHUTIN,P.A.LANG,A.BUTRYN,J.BREM,S.GUL,F.D.FULLER,I.S.KIM, JRNL AUTH 4 M.H.CHEAH,T.FRANSSON,A.BHOWMICK,I.D.YOUNG,L.O'RIORDAN, JRNL AUTH 5 A.S.BREWSTER,I.PETTINATI,M.DOYLE,Y.JOTI,S.OWADA,K.TONO, JRNL AUTH 6 A.BATYUK,M.S.HUNTER,R.ALONSO-MORI,U.BERGMANN,R.L.OWEN, JRNL AUTH 7 N.K.SAUTER,T.D.W.CLARIDGE,C.V.ROBINSON,V.K.YACHANDRA,J.YANO, JRNL AUTH 8 J.F.KERN,A.M.ORVILLE,C.J.SCHOFIELD JRNL TITL X-RAY FREE-ELECTRON LASER STUDIES REVEAL CORRELATED MOTION JRNL TITL 2 DURING ISOPENICILLIN N SYNTHASE CATALYSIS. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34417180 JRNL DOI 10.1126/SCIADV.ABH0250 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.9500 - 3.9223 1.00 2905 165 0.1537 0.1689 REMARK 3 2 3.9223 - 3.1133 1.00 2796 145 0.1329 0.1554 REMARK 3 3 3.1133 - 2.7198 1.00 2744 143 0.1435 0.1665 REMARK 3 4 2.7198 - 2.4711 1.00 2743 127 0.1375 0.1737 REMARK 3 5 2.4711 - 2.2940 1.00 2738 129 0.1340 0.1816 REMARK 3 6 2.2940 - 2.1587 1.00 2736 126 0.1299 0.1811 REMARK 3 7 2.1587 - 2.0506 1.00 2721 125 0.1337 0.1660 REMARK 3 8 2.0506 - 1.9613 1.00 2662 149 0.1357 0.1752 REMARK 3 9 1.9613 - 1.8858 1.00 2687 138 0.1472 0.1808 REMARK 3 10 1.8858 - 1.8207 1.00 2697 139 0.1528 0.2151 REMARK 3 11 1.8207 - 1.7638 1.00 2673 158 0.1654 0.1952 REMARK 3 12 1.7638 - 1.7134 1.00 2687 139 0.1704 0.2125 REMARK 3 13 1.7134 - 1.6683 1.00 2670 138 0.1767 0.2396 REMARK 3 14 1.6683 - 1.6276 1.00 2691 132 0.1817 0.2294 REMARK 3 15 1.6276 - 1.5906 1.00 2625 164 0.1955 0.2378 REMARK 3 16 1.5906 - 1.5567 1.00 2693 126 0.2045 0.2337 REMARK 3 17 1.5567 - 1.5256 1.00 2656 142 0.2181 0.2199 REMARK 3 18 1.5256 - 1.4968 1.00 2665 142 0.2309 0.2756 REMARK 3 19 1.4968 - 1.4700 1.00 2667 123 0.2509 0.2712 REMARK 3 20 1.4700 - 1.4451 1.00 2691 116 0.2632 0.2957 REMARK 3 21 1.4451 - 1.4218 1.00 2636 151 0.2727 0.2831 REMARK 3 22 1.4218 - 1.3999 1.00 2682 145 0.2842 0.3087 REMARK 3 23 1.3999 - 1.3793 1.00 2629 127 0.2944 0.3470 REMARK 3 24 1.3793 - 1.3600 0.98 2628 149 0.3050 0.3358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2998 REMARK 3 ANGLE : 0.969 4105 REMARK 3 CHIRALITY : 0.116 429 REMARK 3 PLANARITY : 0.007 549 REMARK 3 DIHEDRAL : 12.748 1091 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9813 -4.1259 14.8300 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.0753 REMARK 3 T33: 0.1041 T12: 0.0036 REMARK 3 T13: 0.0161 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 1.3898 L22: 1.8199 REMARK 3 L33: 3.4793 L12: 0.5571 REMARK 3 L13: 0.6995 L23: 1.3504 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: -0.0739 S13: -0.0464 REMARK 3 S21: 0.0317 S22: -0.0578 S23: 0.0390 REMARK 3 S31: 0.0520 S32: -0.1994 S33: 0.0181 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3247 1.9026 -2.3874 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.0898 REMARK 3 T33: 0.1235 T12: 0.0310 REMARK 3 T13: -0.0012 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.9833 L22: 0.0462 REMARK 3 L33: 3.2519 L12: 0.1070 REMARK 3 L13: -0.3561 L23: 0.1546 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.0376 S13: -0.0206 REMARK 3 S21: -0.0022 S22: 0.0262 S23: 0.0874 REMARK 3 S31: -0.3040 S32: -0.4442 S33: -0.0638 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4641 6.0751 -23.2319 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.0746 REMARK 3 T33: 0.1100 T12: 0.0199 REMARK 3 T13: -0.0196 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 7.2436 L22: 3.0745 REMARK 3 L33: 4.0857 L12: 1.4522 REMARK 3 L13: -3.5180 L23: -0.8344 REMARK 3 S TENSOR REMARK 3 S11: 0.1194 S12: 0.2498 S13: 0.1611 REMARK 3 S21: -0.0331 S22: 0.0242 S23: 0.2290 REMARK 3 S31: -0.4017 S32: -0.2207 S33: -0.1084 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6327 9.9760 -14.1414 REMARK 3 T TENSOR REMARK 3 T11: 0.2317 T22: 0.0746 REMARK 3 T33: 0.1158 T12: -0.0146 REMARK 3 T13: 0.0166 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.0109 L22: 1.4428 REMARK 3 L33: 2.3172 L12: 0.6300 REMARK 3 L13: 0.0980 L23: -0.3291 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.1622 S13: 0.0603 REMARK 3 S21: -0.0990 S22: 0.1071 S23: -0.0493 REMARK 3 S31: -0.5690 S32: 0.0957 S33: -0.0161 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0474 9.0763 3.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.0716 REMARK 3 T33: 0.1349 T12: 0.0358 REMARK 3 T13: 0.0071 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.7244 L22: 1.2817 REMARK 3 L33: 3.8218 L12: -0.9424 REMARK 3 L13: 1.0393 L23: -1.8165 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: -0.0346 S13: 0.0958 REMARK 3 S21: -0.0294 S22: 0.0221 S23: 0.0377 REMARK 3 S31: -0.4534 S32: -0.2272 S33: -0.0196 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8977 10.2727 9.0130 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.1057 REMARK 3 T33: 0.1315 T12: -0.0486 REMARK 3 T13: 0.0033 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: -0.0214 L22: 1.2937 REMARK 3 L33: 5.2049 L12: -0.0584 REMARK 3 L13: 0.0068 L23: -2.5238 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: -0.0044 S13: 0.0282 REMARK 3 S21: 0.1492 S22: 0.0025 S23: -0.0864 REMARK 3 S31: -0.9337 S32: 0.4559 S33: 0.0461 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6601 -8.5926 -3.9785 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0512 REMARK 3 T33: 0.1217 T12: -0.0039 REMARK 3 T13: 0.0165 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.8088 L22: 0.6507 REMARK 3 L33: 1.8066 L12: -0.1765 REMARK 3 L13: 0.4514 L23: 0.0188 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.0136 S13: -0.1052 REMARK 3 S21: -0.0891 S22: 0.0080 S23: 0.0267 REMARK 3 S31: 0.1171 S32: -0.0204 S33: -0.0362 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5729 2.1889 10.3623 REMARK 3 T TENSOR REMARK 3 T11: 0.2007 T22: 0.3744 REMARK 3 T33: 0.1818 T12: -0.0773 REMARK 3 T13: -0.0289 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.7785 L22: 2.4270 REMARK 3 L33: 2.7520 L12: 0.7267 REMARK 3 L13: -1.0345 L23: -0.9072 REMARK 3 S TENSOR REMARK 3 S11: 0.0822 S12: -0.2224 S13: -0.1672 REMARK 3 S21: 0.2869 S22: -0.2153 S23: -0.3237 REMARK 3 S31: -0.1566 S32: 1.1721 S33: 0.1697 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6488 -1.0724 -8.2825 REMARK 3 T TENSOR REMARK 3 T11: 0.2799 T22: 0.2541 REMARK 3 T33: 0.2323 T12: -0.0189 REMARK 3 T13: 0.0012 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 6.1877 L22: 9.1117 REMARK 3 L33: 7.0612 L12: 0.5049 REMARK 3 L13: 2.2325 L23: 4.8869 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: 0.5328 S13: -0.5405 REMARK 3 S21: -0.9478 S22: 0.2905 S23: 0.0633 REMARK 3 S31: 0.0150 S32: 0.5669 S33: -0.2423 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292105691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 74.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 2.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M LI2SO4, 0.1M TRIS PH8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.75900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.54100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.54100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.75900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 57 NZ REMARK 470 LYS A 59 CE NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 305 CD CE NZ REMARK 470 ASP A 307 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 101 O HOH A 501 1.84 REMARK 500 O HOH A 680 O HOH A 729 2.06 REMARK 500 O HOH A 511 O HOH A 837 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 178 O HOH A 527 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -111.18 -101.39 REMARK 500 HIS A 82 58.33 -110.01 REMARK 500 LYS A 97 -43.42 -134.43 REMARK 500 THR A 123 -6.94 77.53 REMARK 500 ASN A 230 -28.41 -156.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 888 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 891 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 97.6 REMARK 620 3 HIS A 270 NE2 85.3 90.8 REMARK 620 4 ACV A 403 S17 92.1 80.3 170.3 REMARK 620 5 OXY A 404 O2 80.2 173.6 94.9 93.8 REMARK 620 6 HOH A 625 O 168.6 93.2 90.9 93.4 89.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACV A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OXY A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB REMARK 900 RELATED ID: 1BK0 RELATED DB: PDB DBREF 6ZAP A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET ACV A 403 56 HET OXY A 404 2 HET FE A 405 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM OXY OXYGEN MOLECULE HETNAM FE FE (III) ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACV C14 H25 N3 O6 S FORMUL 5 OXY O2 FORMUL 6 FE FE 3+ FORMUL 7 HOH *389(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O ILE A 251 N PHE A 42 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE A 405 1555 1555 2.17 LINK OD1 ASP A 216 FE FE A 405 1555 1555 2.08 LINK NE2 HIS A 270 FE FE A 405 1555 1555 2.17 LINK S17 ACV A 403 FE FE A 405 1555 1555 2.24 LINK O2 BOXY A 404 FE FE A 405 1555 1555 2.20 LINK FE FE A 405 O HOH A 625 1555 1555 2.08 CISPEP 1 ASP A 193 PRO A 194 0 -1.86 SITE 1 AC1 3 ARG A 27 HOH A 529 HOH A 533 SITE 1 AC2 4 ARG A 37 LYS A 208 LYS A 266 ARG A 300 SITE 1 AC3 18 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC3 18 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC3 18 VAL A 272 SER A 281 PHE A 285 OXY A 404 SITE 4 AC3 18 FE A 405 HOH A 532 HOH A 534 HOH A 549 SITE 5 AC3 18 HOH A 625 HOH A 695 SITE 1 AC4 5 HIS A 214 HIS A 270 ACV A 403 FE A 405 SITE 2 AC4 5 HOH A 625 SITE 1 AC5 6 HIS A 214 ASP A 216 HIS A 270 ACV A 403 SITE 2 AC5 6 OXY A 404 HOH A 625 CRYST1 41.518 74.460 101.082 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024086 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009893 0.00000