HEADER OXIDOREDUCTASE 05-JUN-20 6ZAR TITLE AS-ISOLATED COPPER NITRITE REDUCTASE FROM BRADYRHIZOBIUM SP. ORS 375 TITLE 2 (TWO-DOMAIN) AT 1.1 A RESOLUTION (UNRESTRAINED, FULL MATRIX TITLE 3 REFINEMENT BY SHELX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-CONTAINING NITRITE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.7.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM SP. (STRAIN ORS 375); SOURCE 3 ORGANISM_TAXID: 566679; SOURCE 4 STRAIN: ORS 375; SOURCE 5 GENE: NIRK, BRAO375_4030011; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-26B(+) KEYWDS NITRITE REDUCTASE, COPPER NITRITE REDUCTASE, COPPER-CONTAINING KEYWDS 2 NITRITE REDUCTASE, BRNIR, BR2DNIR, AS-ISOLATED, ATOMIC RESOLUTION, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.ROSE,S.V.ANTONYUK,D.SASAKI,K.YAMASHITA,K.HIRATA,G.UENO,H.AGO, AUTHOR 2 R.R.EADY,T.TOSHA,M.YAMAMOTO,S.S.HASNAIN REVDAT 3 24-JAN-24 6ZAR 1 REMARK REVDAT 2 10-FEB-21 6ZAR 1 JRNL REVDAT 1 20-JAN-21 6ZAR 0 JRNL AUTH S.L.ROSE,S.V.ANTONYUK,D.SASAKI,K.YAMASHITA,K.HIRATA,G.UENO, JRNL AUTH 2 H.AGO,R.R.EADY,T.TOSHA,M.YAMAMOTO,S.S.HASNAIN JRNL TITL AN UNPRECEDENTED INSIGHT INTO THE CATALYTIC MECHANISM OF JRNL TITL 2 COPPER NITRITE REDUCTASE FROM ATOMIC-RESOLUTION AND JRNL TITL 3 DAMAGE-FREE STRUCTURES. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 33523860 JRNL DOI 10.1126/SCIADV.ABD8523 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.125 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 8133 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 154537 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.099 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.123 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 5719 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 108958 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 638 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3230.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2541.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 179 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) BY 4 % REMARK 4 REMARK 4 6ZAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97634 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 162755 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6THF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULPHATE, 50MM HEPES REMARK 280 BUFF, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.35800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.35800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.35800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.35800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.35800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.35800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 53.35800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 53.35800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 53.35800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 53.35800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 53.35800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 53.35800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 53.35800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 53.35800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 53.35800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 53.35800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 53.35800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 53.35800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -371.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -53.35800 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 53.35800 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 106.71600 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 53.35800 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 106.71600 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 53.35800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N1 EPE A 413 LIES ON A SPECIAL POSITION. REMARK 375 N4 EPE A 413 LIES ON A SPECIAL POSITION. REMARK 375 C9 EPE A 413 LIES ON A SPECIAL POSITION. REMARK 375 S EPE A 413 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1016 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 12 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 GLU A 48 OE1 - CD - OE2 ANGL. DEV. = -10.9 DEGREES REMARK 500 GLU A 48 CG - CD - OE2 ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 117 NE - CZ - NH1 ANGL. DEV. = -7.9 DEGREES REMARK 500 ARG A 117 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 154 CG - CD - NE ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG A 154 CD - NE - CZ ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG A 154 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 155 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 166 NH1 - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 169 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 182 NH1 - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 HIS A 240 CG - ND1 - CE1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 334 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR A 345 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 PHE A 346 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 76.07 -103.00 REMARK 500 GLN A 24 -80.00 -77.97 REMARK 500 ALA A 131 70.16 -157.12 REMARK 500 ALA A 131 68.60 -157.12 REMARK 500 PRO A 132 41.35 -94.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 299 THR A 300 147.85 REMARK 500 HIS A 301 ASN A 302 145.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1114 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1115 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1116 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1117 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A1121 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1122 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1123 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1124 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1125 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A1126 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1127 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A1128 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A1129 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A1130 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A1131 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A1132 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A1133 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A1134 DISTANCE = 7.29 ANGSTROMS REMARK 525 HOH A1135 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A1136 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH A1137 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH A1138 DISTANCE = 7.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 89 ND1 REMARK 620 2 CYS A 130 SG 131.1 REMARK 620 3 HIS A 140 ND1 100.3 114.3 REMARK 620 4 MET A 145 SD 84.1 111.6 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 402 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 129 NE2 106.2 REMARK 620 3 HIS A 301 NE2 68.8 91.7 REMARK 620 4 HOH A 519 O 92.8 111.0 154.4 REMARK 620 5 HOH A 877 O 160.0 93.0 117.3 74.5 REMARK 620 6 HOH A 882 O 117.7 129.0 126.7 45.8 42.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 416 DBREF 6ZAR A 2 341 UNP H0SLX7 H0SLX7_BRAS3 25 364 SEQADV 6ZAR MET A 1 UNP H0SLX7 INITIATING METHIONINE SEQADV 6ZAR GLU A 342 UNP H0SLX7 EXPRESSION TAG SEQADV 6ZAR ASN A 343 UNP H0SLX7 EXPRESSION TAG SEQADV 6ZAR LEU A 344 UNP H0SLX7 EXPRESSION TAG SEQADV 6ZAR TYR A 345 UNP H0SLX7 EXPRESSION TAG SEQADV 6ZAR PHE A 346 UNP H0SLX7 EXPRESSION TAG SEQADV 6ZAR GLN A 347 UNP H0SLX7 EXPRESSION TAG SEQRES 1 A 347 MET ASP ASP LEU LYS LEU PRO ARG GLN ARG VAL ASP LEU SEQRES 2 A 347 VAL ALA PRO PRO PHE VAL HIS VAL HIS GLU GLN ALA THR SEQRES 3 A 347 LYS GLN GLY PRO LYS ILE MET GLU PHE LYS LEU VAL VAL SEQRES 4 A 347 GLN GLU LYS LYS MET VAL ILE ASP GLU LYS GLY THR THR SEQRES 5 A 347 PHE GLN ALA MET THR PHE ASN GLY SER MET PRO GLY PRO SEQRES 6 A 347 LEU MET VAL VAL HIS GLU GLY ASP TYR VAL GLU VAL THR SEQRES 7 A 347 LEU VAL ASN PRO ALA THR ASN THR MET PRO HIS ASN ILE SEQRES 8 A 347 ASP PHE HIS SER ALA THR GLY ALA LEU GLY GLY GLY ALA SEQRES 9 A 347 LEU THR LEU ILE ASN PRO GLY GLU GLN VAL VAL LEU ARG SEQRES 10 A 347 TRP LYS ALA THR ARG THR GLY VAL PHE VAL TYR HIS CYS SEQRES 11 A 347 ALA PRO GLY GLY PRO MET ILE PRO TRP HIS VAL VAL SER SEQRES 12 A 347 GLY MET ASN GLY ALA VAL MET VAL LEU PRO ARG ASP GLY SEQRES 13 A 347 LEU ASN ASP GLY HIS GLY HIS SER LEU ARG TYR ASP ARG SEQRES 14 A 347 ILE TYR TYR ILE GLY GLU GLN ASP LEU TYR VAL PRO ARG SEQRES 15 A 347 ASP GLU LYS GLY ASN PHE LYS SER TYR ASP SER PRO GLY SEQRES 16 A 347 GLU ALA TYR SER ASP THR GLU GLU VAL MET ARG LYS LEU SEQRES 17 A 347 THR PRO THR HIS VAL VAL PHE ASN GLY LYS ALA GLY ALA SEQRES 18 A 347 LEU THR GLY LYS ASN ALA LEU ASN ALA ASN VAL GLY GLU SEQRES 19 A 347 ASN VAL LEU ILE VAL HIS SER GLN ALA ASN ARG ASP SER SEQRES 20 A 347 ARG PRO HIS LEU ILE GLY GLY HIS GLY ASP TYR VAL TRP SEQRES 21 A 347 GLU THR GLY LYS PHE SER ASN ALA PRO GLU THR GLY LEU SEQRES 22 A 347 GLU THR TRP PHE ILE ARG GLY GLY SER ALA GLY ALA ALA SEQRES 23 A 347 LEU TYR LYS PHE LEU GLN PRO GLY ILE TYR ALA TYR VAL SEQRES 24 A 347 THR HIS ASN LEU ILE GLU ALA ALA ASN LEU GLY ALA THR SEQRES 25 A 347 ALA HIS PHE LYS VAL GLU GLY LYS TRP ASN ASP ASP LEU SEQRES 26 A 347 MET THR GLN VAL LYS ALA PRO ALA ASP ILE PRO THR GLY SEQRES 27 A 347 SER THR ASN GLU ASN LEU TYR PHE GLN HET CU A 401 1 HET CU A 402 1 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET GOL A 412 6 HET EPE A 413 15 HET EPE A 414 15 HET GOL A 415 6 HET GOL A 416 6 HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EPE HEPES FORMUL 2 CU 2(CU 2+) FORMUL 4 SO4 9(O4 S 2-) FORMUL 13 GOL 3(C3 H8 O3) FORMUL 14 EPE 2(C8 H18 N2 O4 S) FORMUL 18 HOH *638(H2 O) HELIX 1 AA1 GLY A 98 THR A 106 5 9 HELIX 2 AA2 PRO A 135 SER A 143 1 9 HELIX 3 AA3 SER A 193 LYS A 207 1 15 HELIX 4 AA4 THR A 223 ALA A 227 5 5 HELIX 5 AA5 ASN A 302 LEU A 309 1 8 HELIX 6 AA6 THR A 340 LEU A 344 5 5 SHEET 1 AA1 3 ARG A 8 ARG A 10 0 SHEET 2 AA1 3 ILE A 32 VAL A 45 1 O GLU A 34 N GLN A 9 SHEET 3 AA1 3 THR A 52 PHE A 58 -1 O THR A 57 N GLN A 40 SHEET 1 AA2 4 ARG A 8 ARG A 10 0 SHEET 2 AA2 4 ILE A 32 VAL A 45 1 O GLU A 34 N GLN A 9 SHEET 3 AA2 4 TYR A 74 ASN A 81 1 O TYR A 74 N MET A 33 SHEET 4 AA2 4 GLU A 112 LYS A 119 -1 O TRP A 118 N VAL A 75 SHEET 1 AA3 4 LEU A 66 HIS A 70 0 SHEET 2 AA3 4 ASN A 146 LEU A 152 1 O MET A 150 N MET A 67 SHEET 3 AA3 4 GLY A 124 HIS A 129 -1 N GLY A 124 O VAL A 151 SHEET 4 AA3 4 ASP A 92 PHE A 93 -1 N ASP A 92 O HIS A 129 SHEET 1 AA4 2 LEU A 157 ASN A 158 0 SHEET 2 AA4 2 SER A 164 LEU A 165 -1 O LEU A 165 N LEU A 157 SHEET 1 AA5 6 HIS A 212 PHE A 215 0 SHEET 2 AA5 6 ARG A 169 LEU A 178 -1 N LEU A 178 O HIS A 212 SHEET 3 AA5 6 ASN A 235 GLN A 242 1 O VAL A 239 N ILE A 173 SHEET 4 AA5 6 SER A 282 LYS A 289 -1 O ALA A 286 N ILE A 238 SHEET 5 AA5 6 GLY A 256 TRP A 260 -1 N TYR A 258 O LEU A 287 SHEET 6 AA5 6 GLU A 270 LEU A 273 -1 O GLU A 270 N VAL A 259 SHEET 1 AA6 4 LEU A 228 ASN A 231 0 SHEET 2 AA6 4 THR A 312 GLU A 318 1 O HIS A 314 N LEU A 228 SHEET 3 AA6 4 GLY A 294 THR A 300 -1 N TYR A 298 O ALA A 313 SHEET 4 AA6 4 PRO A 249 ILE A 252 -1 N ILE A 252 O ALA A 297 LINK ND1 HIS A 89 CU CU A 401 1555 1555 2.06 LINK NE2 HIS A 94 CU CU A 402 1555 1555 2.01 LINK NE2 HIS A 129 CU CU A 402 1555 1555 2.08 LINK SG CYS A 130 CU CU A 401 1555 1555 2.17 LINK ND1 HIS A 140 CU CU A 401 1555 1555 2.05 LINK SD MET A 145 CU CU A 401 1555 1555 2.57 LINK NE2 HIS A 301 CU CU A 402 1555 12565 2.01 LINK CU CU A 402 O AHOH A 519 1555 1555 1.94 LINK CU CU A 402 O AHOH A 877 1555 1555 2.16 LINK CU CU A 402 O BHOH A 882 1555 1555 2.02 CISPEP 1 PRO A 16 PRO A 17 0 8.86 CISPEP 2 MET A 62 PRO A 63 0 -5.79 SITE 1 AC1 4 HIS A 89 CYS A 130 HIS A 140 MET A 145 SITE 1 AC2 7 ASP A 92 HIS A 94 HIS A 129 HIS A 301 SITE 2 AC2 7 HOH A 519 HOH A 877 HOH A 882 SITE 1 AC3 6 ASP A 3 LEU A 4 ARG A 8 ARG A 117 SITE 2 AC3 6 HOH A1052 HOH A1112 SITE 1 AC4 4 ASP A 183 GLU A 184 LYS A 189 HOH A 605 SITE 1 AC5 5 LYS A 330 ALA A 331 HOH A 508 HOH A 769 SITE 2 AC5 5 HOH A1020 SITE 1 AC6 5 HIS A 163 SER A 164 ASP A 192 HOH A 511 SITE 2 AC6 5 HOH A1094 SITE 1 AC7 10 LYS A 43 THR A 52 SER A 190 LYS A 289 SITE 2 AC7 10 HOH A 503 HOH A 528 HOH A 591 HOH A 680 SITE 3 AC7 10 HOH A 819 HOH A 827 SITE 1 AC8 6 GLY A 319 LYS A 320 TRP A 321 HOH A 510 SITE 2 AC8 6 HOH A 612 HOH A 767 SITE 1 AC9 10 HIS A 161 SER A 266 ALA A 268 HOH A 507 SITE 2 AC9 10 HOH A 514 HOH A 534 HOH A 585 HOH A 656 SITE 3 AC9 10 HOH A 725 HOH A 770 SITE 1 AD1 9 LYS A 36 GLN A 113 PRO A 336 HOH A 525 SITE 2 AD1 9 HOH A 529 HOH A 573 HOH A 653 HOH A 810 SITE 3 AD1 9 HOH A 849 SITE 1 AD2 11 ARG A 169 ILE A 170 HOH A 501 HOH A 506 SITE 2 AD2 11 HOH A 593 HOH A 654 HOH A 679 HOH A 736 SITE 3 AD2 11 HOH A 775 HOH A 859 HOH A 898 SITE 1 AD3 7 ARG A 169 LYS A 225 ASN A 226 ASN A 231 SITE 2 AD3 7 HOH A 721 HOH A 965 HOH A 972 SITE 1 AD4 7 GLU A 261 GLU A 270 ARG A 279 HOH A 701 SITE 2 AD4 7 HOH A 747 HOH A 871 HOH A1134 SITE 1 AD5 11 THR A 121 ARG A 122 TYR A 258 LEU A 291 SITE 2 AD5 11 LEU A 325 HOH A 568 HOH A 596 HOH A 660 SITE 3 AD5 11 HOH A 752 HOH A 761 HOH A 854 SITE 1 AD6 9 ALA A 15 TYR A 345 PHE A 346 HOH A 641 SITE 2 AD6 9 HOH A 803 HOH A 851 HOH A1040 HOH A1103 SITE 3 AD6 9 HOH A1118 SITE 1 AD7 9 GLY A 224 ALA A 227 ILE A 295 HIS A 314 SITE 2 AD7 9 LYS A 316 HOH A 562 HOH A 579 HOH A 959 SITE 3 AD7 9 HOH A1083 CRYST1 106.716 106.716 106.716 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009371 0.00000