HEADER SIGNALING PROTEIN 09-JUN-20 6ZBT TITLE STRUCTURE OF 14-3-3 GAMMA IN COMPLEX WITH NEDD4-2 14-3-3 BINDING MOTIF TITLE 2 SER342 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 14-3-3 PROTEIN GAMMA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PROTEIN KINASE C INHIBITOR PROTEIN 1,KCIP-1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE; COMPND 9 CHAIN: E, F, G, H; COMPND 10 SYNONYM: HECT-TYPE E3 UBIQUITIN TRANSFERASE NED4L,NEDD4.2,NEDD4-2; COMPND 11 EC: 2.3.2.26; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YWHAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS E3 UBIQUITIN PROTEIN LIGASE, COMPLEX, PHOSPHORYLATION, 14-3-3 KEYWDS 2 PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JOSHI,D.KALABOVA,T.OBSIL,V.OBSILOVA REVDAT 3 24-JAN-24 6ZBT 1 REMARK REVDAT 2 04-AUG-21 6ZBT 1 JRNL REVDAT 1 21-JUL-21 6ZBT 0 JRNL AUTH P.POHL,R.JOSHI,O.PETRVALSKA,T.OBSIL,V.OBSILOVA JRNL TITL 14-3-3-PROTEIN REGULATES NEDD4-2 BY MODULATING INTERACTIONS JRNL TITL 2 BETWEEN HECT AND WW DOMAINS. JRNL REF COMMUN BIOL V. 4 899 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 34294877 JRNL DOI 10.1038/S42003-021-02419-0 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.928 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 108857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.928 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.5103 - 4.4321 1.00 7105 140 0.1849 0.2090 REMARK 3 2 4.4321 - 3.5202 1.00 7119 140 0.1754 0.1966 REMARK 3 3 3.5202 - 3.0759 1.00 7133 140 0.2107 0.2462 REMARK 3 4 3.0759 - 2.7950 1.00 7124 140 0.2233 0.2671 REMARK 3 5 2.7950 - 2.5948 1.00 7131 141 0.2205 0.2369 REMARK 3 6 2.5948 - 2.4419 1.00 7095 139 0.2193 0.2328 REMARK 3 7 2.4419 - 2.3197 1.00 7137 140 0.2248 0.2772 REMARK 3 8 2.3197 - 2.2188 1.00 7133 141 0.2243 0.2505 REMARK 3 9 2.2188 - 2.1334 1.00 7064 139 0.2301 0.2800 REMARK 3 10 2.1334 - 2.0598 1.00 7181 140 0.2345 0.2831 REMARK 3 11 2.0598 - 1.9954 1.00 7106 140 0.2472 0.2609 REMARK 3 12 1.9954 - 1.9384 1.00 7117 140 0.2639 0.3025 REMARK 3 13 1.9384 - 1.8874 1.00 7093 139 0.2661 0.3202 REMARK 3 14 1.8874 - 1.8413 1.00 7103 140 0.2757 0.3139 REMARK 3 15 1.8413 - 1.7995 0.99 7117 140 0.3065 0.3296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.239 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.825 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7470 REMARK 3 ANGLE : 0.505 10121 REMARK 3 CHIRALITY : 0.033 1160 REMARK 3 PLANARITY : 0.003 1283 REMARK 3 DIHEDRAL : 7.865 4583 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : SAGITALLY BENDED SI111 CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108872 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 27.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.810 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2B05 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, MAGNESIUM CHLORIDE, HEPES, REMARK 280 HEXAFLUORO-2-PROPANOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 102.92850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.42580 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.78467 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 102.92850 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 59.42580 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.78467 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 102.92850 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 59.42580 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.78467 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 118.85159 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.56933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 118.85159 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.56933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 118.85159 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.56933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 SER B 71 REMARK 465 ALA B 72 REMARK 465 ASP B 73 REMARK 465 GLY B 74 REMARK 465 ASN B 75 REMARK 465 MET C 1 REMARK 465 VAL C 2 REMARK 465 SER C 71 REMARK 465 ALA C 72 REMARK 465 ASP C 73 REMARK 465 ASN C 212 REMARK 465 GLU C 213 REMARK 465 MET D 1 REMARK 465 VAL D 2 REMARK 465 ALA D 72 REMARK 465 ASP D 73 REMARK 465 GLY D 74 REMARK 465 ASP E 345 REMARK 465 ALA E 346 REMARK 465 VAL E 347 REMARK 465 ASP F 345 REMARK 465 ALA F 346 REMARK 465 VAL F 347 REMARK 465 LEU G 338 REMARK 465 ASP G 345 REMARK 465 ALA G 346 REMARK 465 VAL G 347 REMARK 465 LEU H 338 REMARK 465 ASP H 345 REMARK 465 ALA H 346 REMARK 465 VAL H 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 ASN A 34 CG OD1 ND2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 ASN A 39 CG OD1 ND2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 ASN A 212 CG OD1 ND2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 ASP A 214 CG OD1 OD2 REMARK 470 SER A 215 OG REMARK 470 TYR A 216 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 LEU A 221 CG CD1 CD2 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 THR B 70 OG1 CG2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 ILE B 79 CG1 CG2 CD1 REMARK 470 ARG B 83 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 470 LEU B 211 CG CD1 CD2 REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 ASP B 214 CG OD1 OD2 REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 ASP C 3 CG OD1 OD2 REMARK 470 GLU C 5 CG CD OE1 OE2 REMARK 470 GLN C 6 CG CD OE1 NE2 REMARK 470 GLN C 9 CG CD OE1 NE2 REMARK 470 GLN C 68 CG CD OE1 NE2 REMARK 470 LYS C 69 CG CD CE NZ REMARK 470 THR C 70 OG1 CG2 REMARK 470 ASN C 75 CG OD1 ND2 REMARK 470 LYS C 77 CG CD CE NZ REMARK 470 GLU C 80 CG CD OE1 OE2 REMARK 470 ARG C 83 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 87 CG CD OE1 OE2 REMARK 470 GLU C 114 CG CD OE1 OE2 REMARK 470 LEU C 211 CG CD1 CD2 REMARK 470 ASP C 214 CG OD1 OD2 REMARK 470 SER C 215 OG REMARK 470 TYR C 216 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN D 68 CG CD OE1 NE2 REMARK 470 LYS D 69 CG CD CE NZ REMARK 470 THR D 70 OG1 CG2 REMARK 470 SER D 71 OG REMARK 470 ASN D 75 CG OD1 ND2 REMARK 470 GLU D 76 CG CD OE1 OE2 REMARK 470 LYS D 77 CG CD CE NZ REMARK 470 LYS D 78 CG CD CE NZ REMARK 470 ILE D 79 CG1 CG2 CD1 REMARK 470 GLU D 80 CG CD OE1 OE2 REMARK 470 MET D 81 CG SD CE REMARK 470 GLU D 141 CG CD OE1 OE2 REMARK 470 GLU D 148 CG CD OE1 OE2 REMARK 470 GLU D 163 CG CD OE1 OE2 REMARK 470 GLN D 166 CG CD OE1 NE2 REMARK 470 GLU D 213 CG CD OE1 OE2 REMARK 470 ASP D 214 CG OD1 OD2 REMARK 470 SER D 215 OG REMARK 470 LYS D 217 CG CD CE NZ REMARK 470 LEU D 221 CG CD1 CD2 REMARK 470 ARG E 339 CG CD NE CZ NH1 NH2 REMARK 470 ARG G 339 CG CD NE CZ NH1 NH2 REMARK 470 ARG H 339 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 107 -54.09 -122.65 REMARK 500 TYR B 107 -54.29 -122.65 REMARK 500 GLU C 76 -10.78 71.68 REMARK 500 TYR C 107 -53.39 -122.58 REMARK 500 TYR D 107 -54.03 -121.89 REMARK 500 ALA D 189 75.53 -119.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 548 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 574 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH C 470 DISTANCE = 5.91 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CFH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CFH A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CFH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CFH D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYS E 341 and SEP E REMARK 800 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP E 342 and VAL E REMARK 800 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYS F 341 and SEP F REMARK 800 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP F 342 and VAL F REMARK 800 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYS G 341 and SEP G REMARK 800 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP G 342 and VAL G REMARK 800 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide CYS H 341 and SEP H REMARK 800 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide SEP H 342 and VAL H REMARK 800 343 DBREF 6ZBT A 1 234 UNP P61981 1433G_HUMAN 1 234 DBREF 6ZBT B 1 234 UNP P61981 1433G_HUMAN 1 234 DBREF 6ZBT C 1 234 UNP P61981 1433G_HUMAN 1 234 DBREF 6ZBT D 1 234 UNP P61981 1433G_HUMAN 1 234 DBREF 6ZBT E 338 347 UNP Q96PU5 NED4L_HUMAN 338 347 DBREF 6ZBT F 338 347 UNP Q96PU5 NED4L_HUMAN 338 347 DBREF 6ZBT G 338 347 UNP Q96PU5 NED4L_HUMAN 338 347 DBREF 6ZBT H 338 347 UNP Q96PU5 NED4L_HUMAN 338 347 SEQRES 1 A 234 MET VAL ASP ARG GLU GLN LEU VAL GLN LYS ALA ARG LEU SEQRES 2 A 234 ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA ALA SEQRES 3 A 234 MET LYS ASN VAL THR GLU LEU ASN GLU PRO LEU SER ASN SEQRES 4 A 234 GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL SEQRES 5 A 234 VAL GLY ALA ARG ARG SER SER TRP ARG VAL ILE SER SER SEQRES 6 A 234 ILE GLU GLN LYS THR SER ALA ASP GLY ASN GLU LYS LYS SEQRES 7 A 234 ILE GLU MET VAL ARG ALA TYR ARG GLU LYS ILE GLU LYS SEQRES 8 A 234 GLU LEU GLU ALA VAL CYS GLN ASP VAL LEU SER LEU LEU SEQRES 9 A 234 ASP ASN TYR LEU ILE LYS ASN CYS SER GLU THR GLN TYR SEQRES 10 A 234 GLU SER LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR SEQRES 11 A 234 TYR ARG TYR LEU ALA GLU VAL ALA THR GLY GLU LYS ARG SEQRES 12 A 234 ALA THR VAL VAL GLU SER SER GLU LYS ALA TYR SER GLU SEQRES 13 A 234 ALA HIS GLU ILE SER LYS GLU HIS MET GLN PRO THR HIS SEQRES 14 A 234 PRO ILE ARG LEU GLY LEU ALA LEU ASN TYR SER VAL PHE SEQRES 15 A 234 TYR TYR GLU ILE GLN ASN ALA PRO GLU GLN ALA CYS HIS SEQRES 16 A 234 LEU ALA LYS THR ALA PHE ASP ASP ALA ILE ALA GLU LEU SEQRES 17 A 234 ASP THR LEU ASN GLU ASP SER TYR LYS ASP SER THR LEU SEQRES 18 A 234 ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SEQRES 1 B 234 MET VAL ASP ARG GLU GLN LEU VAL GLN LYS ALA ARG LEU SEQRES 2 B 234 ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA ALA SEQRES 3 B 234 MET LYS ASN VAL THR GLU LEU ASN GLU PRO LEU SER ASN SEQRES 4 B 234 GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL SEQRES 5 B 234 VAL GLY ALA ARG ARG SER SER TRP ARG VAL ILE SER SER SEQRES 6 B 234 ILE GLU GLN LYS THR SER ALA ASP GLY ASN GLU LYS LYS SEQRES 7 B 234 ILE GLU MET VAL ARG ALA TYR ARG GLU LYS ILE GLU LYS SEQRES 8 B 234 GLU LEU GLU ALA VAL CYS GLN ASP VAL LEU SER LEU LEU SEQRES 9 B 234 ASP ASN TYR LEU ILE LYS ASN CYS SER GLU THR GLN TYR SEQRES 10 B 234 GLU SER LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR SEQRES 11 B 234 TYR ARG TYR LEU ALA GLU VAL ALA THR GLY GLU LYS ARG SEQRES 12 B 234 ALA THR VAL VAL GLU SER SER GLU LYS ALA TYR SER GLU SEQRES 13 B 234 ALA HIS GLU ILE SER LYS GLU HIS MET GLN PRO THR HIS SEQRES 14 B 234 PRO ILE ARG LEU GLY LEU ALA LEU ASN TYR SER VAL PHE SEQRES 15 B 234 TYR TYR GLU ILE GLN ASN ALA PRO GLU GLN ALA CYS HIS SEQRES 16 B 234 LEU ALA LYS THR ALA PHE ASP ASP ALA ILE ALA GLU LEU SEQRES 17 B 234 ASP THR LEU ASN GLU ASP SER TYR LYS ASP SER THR LEU SEQRES 18 B 234 ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SEQRES 1 C 234 MET VAL ASP ARG GLU GLN LEU VAL GLN LYS ALA ARG LEU SEQRES 2 C 234 ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA ALA SEQRES 3 C 234 MET LYS ASN VAL THR GLU LEU ASN GLU PRO LEU SER ASN SEQRES 4 C 234 GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL SEQRES 5 C 234 VAL GLY ALA ARG ARG SER SER TRP ARG VAL ILE SER SER SEQRES 6 C 234 ILE GLU GLN LYS THR SER ALA ASP GLY ASN GLU LYS LYS SEQRES 7 C 234 ILE GLU MET VAL ARG ALA TYR ARG GLU LYS ILE GLU LYS SEQRES 8 C 234 GLU LEU GLU ALA VAL CYS GLN ASP VAL LEU SER LEU LEU SEQRES 9 C 234 ASP ASN TYR LEU ILE LYS ASN CYS SER GLU THR GLN TYR SEQRES 10 C 234 GLU SER LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR SEQRES 11 C 234 TYR ARG TYR LEU ALA GLU VAL ALA THR GLY GLU LYS ARG SEQRES 12 C 234 ALA THR VAL VAL GLU SER SER GLU LYS ALA TYR SER GLU SEQRES 13 C 234 ALA HIS GLU ILE SER LYS GLU HIS MET GLN PRO THR HIS SEQRES 14 C 234 PRO ILE ARG LEU GLY LEU ALA LEU ASN TYR SER VAL PHE SEQRES 15 C 234 TYR TYR GLU ILE GLN ASN ALA PRO GLU GLN ALA CYS HIS SEQRES 16 C 234 LEU ALA LYS THR ALA PHE ASP ASP ALA ILE ALA GLU LEU SEQRES 17 C 234 ASP THR LEU ASN GLU ASP SER TYR LYS ASP SER THR LEU SEQRES 18 C 234 ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SEQRES 1 D 234 MET VAL ASP ARG GLU GLN LEU VAL GLN LYS ALA ARG LEU SEQRES 2 D 234 ALA GLU GLN ALA GLU ARG TYR ASP ASP MET ALA ALA ALA SEQRES 3 D 234 MET LYS ASN VAL THR GLU LEU ASN GLU PRO LEU SER ASN SEQRES 4 D 234 GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN VAL SEQRES 5 D 234 VAL GLY ALA ARG ARG SER SER TRP ARG VAL ILE SER SER SEQRES 6 D 234 ILE GLU GLN LYS THR SER ALA ASP GLY ASN GLU LYS LYS SEQRES 7 D 234 ILE GLU MET VAL ARG ALA TYR ARG GLU LYS ILE GLU LYS SEQRES 8 D 234 GLU LEU GLU ALA VAL CYS GLN ASP VAL LEU SER LEU LEU SEQRES 9 D 234 ASP ASN TYR LEU ILE LYS ASN CYS SER GLU THR GLN TYR SEQRES 10 D 234 GLU SER LYS VAL PHE TYR LEU LYS MET LYS GLY ASP TYR SEQRES 11 D 234 TYR ARG TYR LEU ALA GLU VAL ALA THR GLY GLU LYS ARG SEQRES 12 D 234 ALA THR VAL VAL GLU SER SER GLU LYS ALA TYR SER GLU SEQRES 13 D 234 ALA HIS GLU ILE SER LYS GLU HIS MET GLN PRO THR HIS SEQRES 14 D 234 PRO ILE ARG LEU GLY LEU ALA LEU ASN TYR SER VAL PHE SEQRES 15 D 234 TYR TYR GLU ILE GLN ASN ALA PRO GLU GLN ALA CYS HIS SEQRES 16 D 234 LEU ALA LYS THR ALA PHE ASP ASP ALA ILE ALA GLU LEU SEQRES 17 D 234 ASP THR LEU ASN GLU ASP SER TYR LYS ASP SER THR LEU SEQRES 18 D 234 ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SEQRES 1 E 10 LEU ARG SER CYS SEP VAL THR ASP ALA VAL SEQRES 1 F 10 LEU ARG SER CYS SEP VAL THR ASP ALA VAL SEQRES 1 G 10 LEU ARG SER CYS SEP VAL THR ASP ALA VAL SEQRES 1 H 10 LEU ARG SER CYS SEP VAL THR ASP ALA VAL MODRES 6ZBT SEP E 342 SER MODIFIED RESIDUE MODRES 6ZBT SEP F 342 SER MODIFIED RESIDUE MODRES 6ZBT SEP G 342 SER MODIFIED RESIDUE MODRES 6ZBT SEP H 342 SER MODIFIED RESIDUE HET SEP E 342 10 HET SEP F 342 10 HET SEP G 342 10 HET SEP H 342 10 HET CFH A 301 10 HET CFH A 302 10 HET CFH B 301 10 HET CFH D 301 10 HETNAM SEP PHOSPHOSERINE HETNAM CFH 1,1,1,3,3,3-HEXAFLUOROPROPAN-2-OL HETSYN SEP PHOSPHONOSERINE FORMUL 5 SEP 4(C3 H8 N O6 P) FORMUL 9 CFH 4(C3 H2 F6 O) FORMUL 13 HOH *642(H2 O) HELIX 1 AA1 ASP A 3 ALA A 17 1 15 HELIX 2 AA2 ARG A 19 GLU A 32 1 14 HELIX 3 AA3 SER A 38 GLY A 74 1 37 HELIX 4 AA4 ASN A 75 TYR A 107 1 33 HELIX 5 AA5 GLN A 116 ALA A 138 1 23 HELIX 6 AA6 THR A 139 MET A 165 1 27 HELIX 7 AA7 HIS A 169 ILE A 186 1 18 HELIX 8 AA8 ALA A 189 ALA A 206 1 18 HELIX 9 AA9 GLU A 207 LEU A 211 5 5 HELIX 10 AB1 SER A 215 THR A 234 1 20 HELIX 11 AB2 ARG B 4 ALA B 17 1 14 HELIX 12 AB3 ARG B 19 GLU B 32 1 14 HELIX 13 AB4 SER B 38 THR B 70 1 33 HELIX 14 AB5 LYS B 77 TYR B 107 1 31 HELIX 15 AB6 GLN B 116 VAL B 137 1 22 HELIX 16 AB7 THR B 139 MET B 165 1 27 HELIX 17 AB8 HIS B 169 ILE B 186 1 18 HELIX 18 AB9 ALA B 189 ALA B 206 1 18 HELIX 19 AC1 ASN B 212 THR B 234 1 23 HELIX 20 AC2 ARG C 4 ALA C 17 1 14 HELIX 21 AC3 ARG C 19 GLU C 32 1 14 HELIX 22 AC4 SER C 38 LYS C 69 1 32 HELIX 23 AC5 LYS C 77 TYR C 107 1 31 HELIX 24 AC6 GLN C 116 ALA C 138 1 23 HELIX 25 AC7 THR C 139 GLU C 141 5 3 HELIX 26 AC8 LYS C 142 MET C 165 1 24 HELIX 27 AC9 HIS C 169 ILE C 186 1 18 HELIX 28 AD1 ALA C 189 GLU C 207 1 19 HELIX 29 AD2 LEU C 208 LEU C 211 5 4 HELIX 30 AD3 SER C 215 THR C 234 1 20 HELIX 31 AD4 ARG D 4 ALA D 17 1 14 HELIX 32 AD5 ARG D 19 LEU D 33 1 15 HELIX 33 AD6 SER D 38 LYS D 69 1 32 HELIX 34 AD7 GLU D 76 TYR D 107 1 32 HELIX 35 AD8 GLN D 116 VAL D 137 1 22 HELIX 36 AD9 THR D 139 MET D 165 1 27 HELIX 37 AE1 HIS D 169 ILE D 186 1 18 HELIX 38 AE2 ALA D 189 ALA D 206 1 18 HELIX 39 AE3 GLU D 207 LEU D 211 5 5 HELIX 40 AE4 ASN D 212 THR D 234 1 23 LINK C CYS E 341 N SEP E 342 1555 1555 1.33 LINK C SEP E 342 N VAL E 343 1555 1555 1.33 LINK C CYS F 341 N SEP F 342 1555 1555 1.33 LINK C SEP F 342 N VAL F 343 1555 1555 1.33 LINK C CYS G 341 N SEP G 342 1555 1555 1.33 LINK C SEP G 342 N VAL G 343 1555 1555 1.33 LINK C CYS H 341 N SEP H 342 1555 1555 1.33 LINK C SEP H 342 N VAL H 343 1555 1555 1.33 SITE 1 AC1 5 PHE A 201 ASP A 202 CFH A 302 PHE C 201 SITE 2 AC1 5 ARG C 227 SITE 1 AC2 6 PHE A 201 ARG A 227 CFH A 301 LYS C 198 SITE 2 AC2 6 PHE C 201 ASP C 202 SITE 1 AC3 7 LEU B 208 ASP B 209 ILE C 66 LYS C 78 SITE 2 AC3 7 GLN D 9 ARG D 12 LEU D 13 SITE 1 AC4 10 ILE A 66 THR A 70 LYS A 78 MET A 81 SITE 2 AC4 10 GLN B 9 ARG B 12 LEU B 13 ILE D 205 SITE 3 AC4 10 LEU D 208 ASP D 209 SITE 1 AC5 15 LYS A 50 ARG A 57 ARG A 132 TYR A 133 SITE 2 AC5 15 LEU A 177 ASN A 178 VAL A 181 ASN A 229 SITE 3 AC5 15 ARG E 339 SER E 340 VAL E 343 THR E 344 SITE 4 AC5 15 HOH E 401 HOH E 402 HOH E 403 SITE 1 AC6 12 LYS A 50 ARG A 57 ARG A 132 TYR A 133 SITE 2 AC6 12 GLY A 174 LEU A 177 ASN A 178 CYS E 341 SITE 3 AC6 12 THR E 344 HOH E 401 HOH E 402 HOH E 403 SITE 1 AC7 15 LYS C 50 ARG C 57 ARG C 132 TYR C 133 SITE 2 AC7 15 LEU C 177 ASN C 178 VAL C 181 ASN C 229 SITE 3 AC7 15 ARG F 339 SER F 340 VAL F 343 THR F 344 SITE 4 AC7 15 HOH F 402 HOH F 403 HOH F 404 SITE 1 AC8 12 LYS C 50 ARG C 57 ARG C 132 TYR C 133 SITE 2 AC8 12 GLY C 174 LEU C 177 ASN C 178 CYS F 341 SITE 3 AC8 12 THR F 344 HOH F 402 HOH F 403 HOH F 404 SITE 1 AC9 14 LYS B 50 ARG B 57 ARG B 132 TYR B 133 SITE 2 AC9 14 LEU B 177 ASN B 178 VAL B 181 ASN B 229 SITE 3 AC9 14 SER G 340 VAL G 343 THR G 344 HOH G 401 SITE 4 AC9 14 HOH G 402 HOH G 403 SITE 1 AD1 12 LYS B 50 ARG B 57 ARG B 132 TYR B 133 SITE 2 AD1 12 GLY B 174 LEU B 177 ASN B 178 CYS G 341 SITE 3 AD1 12 THR G 344 HOH G 401 HOH G 402 HOH G 403 SITE 1 AD2 13 LYS D 50 ARG D 57 ARG D 132 TYR D 133 SITE 2 AD2 13 LEU D 177 ASN D 178 VAL D 181 ASN D 229 SITE 3 AD2 13 SER H 340 VAL H 343 THR H 344 HOH H 401 SITE 4 AD2 13 HOH H 402 SITE 1 AD3 12 LYS D 50 ARG D 57 ARG D 132 TYR D 133 SITE 2 AD3 12 GLY D 174 LEU D 177 ASN D 178 SER H 340 SITE 3 AD3 12 CYS H 341 THR H 344 HOH H 401 HOH H 402 CRYST1 205.857 205.857 74.354 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004858 0.002805 0.000000 0.00000 SCALE2 0.000000 0.005609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013449 0.00000