HEADER HYDROLASE 09-JUN-20 6ZBX TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF THE BACILLUS CIRCULANS ALPHA-1,6 TITLE 2 MANNANASE IN COMPLEX WITH AN ALPHA-1,6- ALPHA-MANNO-CYCLOPHELLITOL TITLE 3 CARBASUGAR-STABILISED TRISACCHARIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,6-MANNANASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: N-TERMINALLY HIS-TAGGED CATALYTIC DOMAIN OF BCGH76 COMPND 7 WITH MUTATION R341Q; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UNK-UNK-UNK-UNK; COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: PEPTIDE, PROBABLY CONNECTED TO EITHER CHAIN A OR B, COMPND 13 BUT UNABLE TO BE IDENTIFIED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CIRCULANS; SOURCE 3 ORGANISM_TAXID: 1397; SOURCE 4 GENE: AMAN6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: TUNER (DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: BACILLUS CIRCULANS; SOURCE 10 ORGANISM_TAXID: 1397; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANNANASE, CYCLOPHELLITOL, EPOXIDE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHROEDER,W.A.OFFEN,Y.JIN,C.DE BOER,J.ENOTERPI,L.MARINO,G.A.VAN DER AUTHOR 2 MAREL,J.D.C.CODEE,H.S.OVERKLEEFT,G.J.DAVIES REVDAT 5 24-JAN-24 6ZBX 1 REMARK REVDAT 4 14-JUL-21 6ZBX 1 JRNL REVDAT 3 02-JUN-21 6ZBX 1 JRNL REVDAT 2 05-MAY-21 6ZBX 1 JRNL REVDAT 1 28-APR-21 6ZBX 0 JRNL AUTH S.P.SCHRODER,W.A.OFFEN,A.MALES,Y.JIN,C.DE BOER,J.ENOTARPI, JRNL AUTH 2 L.MARINO,G.A.VAN DER MAREL,B.I.FLOREA,J.D.C.CODEE, JRNL AUTH 3 H.S.OVERKLEEFT,G.J.DAVIES JRNL TITL DEVELOPMENT OF NON-HYDROLYSABLE OLIGOSACCHARIDE JRNL TITL 2 ACTIVITY-BASED INACTIVATORS FOR ENDOGLYCANASES: A CASE STUDY JRNL TITL 3 ON ALPHA-1,6 MANNANASES. JRNL REF CHEMISTRY V. 27 9519 2021 JRNL REFN ISSN 0947-6539 JRNL PMID 33878235 JRNL DOI 10.1002/CHEM.202101255 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 121581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 6308 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8382 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 496 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 583 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : -0.12000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.458 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5702 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4781 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7782 ; 1.867 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11114 ; 1.726 ; 1.599 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 695 ; 6.246 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;37.350 ;24.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;11.651 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;25.754 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6557 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1256 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10479 ; 3.479 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THERE ARE REGIONS OF UNMODELLED DENSITY REMARK 3 NEAR THE SIDE CHAINS OF PHE122A, ASN206A AND 206B, ASP266A AND REMARK 3 TYR319A. THERE IS A PEPTIDE CHAIN OF 4 AMINO ACIDS WHICH COULD REMARK 3 NOT BE ASSIGNED WITH CONFIDENCE TO EITHER CHAIN A OR B AND HAVE REMARK 3 THEREFORE BEEN MODELLED AS UNK RESIDUES. REMARK 4 REMARK 4 6ZBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292108703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4D4A.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, AMMONIUM NITRATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 GLU A 28 REMARK 465 VAL A 29 REMARK 465 LEU A 30 REMARK 465 PHE A 31 REMARK 465 GLN A 32 REMARK 465 GLY A 33 REMARK 465 PRO A 34 REMARK 465 ALA A 35 REMARK 465 TYR A 36 REMARK 465 THR A 37 REMARK 465 GLN A 354 REMARK 465 MET B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 LEU B 27 REMARK 465 GLU B 28 REMARK 465 VAL B 29 REMARK 465 LEU B 30 REMARK 465 PHE B 31 REMARK 465 GLN B 32 REMARK 465 GLY B 33 REMARK 465 PRO B 34 REMARK 465 ALA B 35 REMARK 465 TYR B 36 REMARK 465 THR B 37 REMARK 465 GLN B 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 46 NZ REMARK 470 LYS A 58 NZ REMARK 470 LYS A 65 CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 LEU A 356 CG CD1 CD2 REMARK 470 LYS B 65 CE NZ REMARK 470 LYS B 68 CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ASP B 176 CG OD1 OD2 REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 HIS B 234 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 311 CE NZ REMARK 470 GLU B 335 CG CD OE1 OE2 REMARK 470 LEU B 356 CG CD1 CD2 REMARK 470 SER B 357 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 77 CD GLU A 77 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 338 CA - CB - CG ANGL. DEV. = -13.2 DEGREES REMARK 500 TRP B 338 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 175 -89.04 -84.56 REMARK 500 LYS A 200 15.36 59.94 REMARK 500 LEU A 279 39.77 -98.02 REMARK 500 SER B 175 -93.48 -86.09 REMARK 500 LEU B 279 41.04 -97.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 999 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 980 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 981 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B 982 DISTANCE = 6.57 ANGSTROMS DBREF 6ZBX A 35 375 UNP Q9Z4P9 Q9Z4P9_BACCI 35 375 DBREF 6ZBX B 35 375 UNP Q9Z4P9 Q9Z4P9_BACCI 35 375 DBREF 6ZBX E 1 4 PDB 6ZBX 6ZBX 1 4 SEQADV 6ZBX MET A 14 UNP Q9Z4P9 INITIATING METHIONINE SEQADV 6ZBX GLY A 15 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX SER A 16 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX SER A 17 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS A 18 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS A 19 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS A 20 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS A 21 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS A 22 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS A 23 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX SER A 24 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX SER A 25 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLY A 26 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX LEU A 27 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLU A 28 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX VAL A 29 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX LEU A 30 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX PHE A 31 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLN A 32 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLY A 33 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX PRO A 34 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLN A 341 UNP Q9Z4P9 ARG 341 ENGINEERED MUTATION SEQADV 6ZBX MET B 14 UNP Q9Z4P9 INITIATING METHIONINE SEQADV 6ZBX GLY B 15 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX SER B 16 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX SER B 17 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS B 18 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS B 19 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS B 20 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS B 21 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS B 22 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX HIS B 23 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX SER B 24 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX SER B 25 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLY B 26 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX LEU B 27 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLU B 28 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX VAL B 29 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX LEU B 30 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX PHE B 31 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLN B 32 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLY B 33 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX PRO B 34 UNP Q9Z4P9 EXPRESSION TAG SEQADV 6ZBX GLN B 341 UNP Q9Z4P9 ARG 341 ENGINEERED MUTATION SEQRES 1 A 362 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 362 LEU GLU VAL LEU PHE GLN GLY PRO ALA TYR THR ALA SER SEQRES 3 A 362 ASP GLY ASP THR ALA MET LYS ALA PHE ASN ASP THR PHE SEQRES 4 A 362 TRP ASP PRO ASN ALA LYS MET PHE TRP LYS ASP SER LYS SEQRES 5 A 362 ARG GLU LYS HIS GLN ASP PHE TRP VAL GLU ALA GLU LEU SEQRES 6 A 362 TRP GLU LEU VAL MET ASP ALA TYR GLN HIS THR SER ASP SEQRES 7 A 362 PRO ALA LEU LYS ALA GLU LEU LYS THR GLN ILE ASP ASP SEQRES 8 A 362 VAL TYR ASP GLY THR VAL ALA LYS TYR GLY GLN ASP TRP SEQRES 9 A 362 THR ASN ASN PRO PHE ASN ASP ASP ILE MET TRP TRP ALA SEQRES 10 A 362 MET GLY SER ALA ARG ALA TYR GLN ILE THR GLY ASN PRO SEQRES 11 A 362 ARG TYR LEU GLU ALA ALA ARG ASP HIS PHE ASP PHE VAL SEQRES 12 A 362 TYR ASP THR GLN TRP ASP GLU GLU PHE ALA ASN GLY GLY SEQRES 13 A 362 ILE TRP TRP LEU ASN SER ASP HIS ASN THR LYS ASN ALA SEQRES 14 A 362 CYS ILE ASN PHE PRO ALA ALA GLN ALA ALA LEU TYR LEU SEQRES 15 A 362 TYR ASP ILE THR LYS ASP GLU HIS TYR LEU ASN ALA ALA SEQRES 16 A 362 THR LYS ILE PHE ARG TRP GLY LYS THR MET LEU THR ASP SEQRES 17 A 362 GLY ASN GLY LYS VAL PHE ASP ARG ILE GLU ILE GLU HIS SEQRES 18 A 362 GLY ALA VAL PRO ASP ALA THR HIS TYR ASN GLN GLY THR SEQRES 19 A 362 TYR ILE GLY SER ALA VAL GLY LEU TYR LYS ALA THR GLY SEQRES 20 A 362 ASN ALA VAL TYR LEU ASP ASP ALA VAL LYS ALA ALA LYS SEQRES 21 A 362 PHE THR LYS ASN HIS LEU VAL ASP SER ASN GLY VAL LEU SEQRES 22 A 362 ASN TYR GLU GLY PRO ASN GLY ASP LEU LYS GLY GLY LYS SEQRES 23 A 362 THR ILE LEU MET ARG ASN LEU ALA HIS LEU GLN LYS THR SEQRES 24 A 362 LEU ASP GLU THR GLY GLN TYR PRO GLU PHE SER ALA GLU SEQRES 25 A 362 PHE ASP GLU TRP LEU ALA PHE ASN ILE GLU MET ALA TRP SEQRES 26 A 362 SER HIS GLN ASN SER ASP HIS ILE VAL ASP GLY ASN TRP SEQRES 27 A 362 ALA GLY GLN LEU LEU SER GLY THR TYR GLU SER TRP SER SEQRES 28 A 362 SER ALA ALA ALA VAL GLN ALA LEU ASN GLY ILE SEQRES 1 B 362 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 362 LEU GLU VAL LEU PHE GLN GLY PRO ALA TYR THR ALA SER SEQRES 3 B 362 ASP GLY ASP THR ALA MET LYS ALA PHE ASN ASP THR PHE SEQRES 4 B 362 TRP ASP PRO ASN ALA LYS MET PHE TRP LYS ASP SER LYS SEQRES 5 B 362 ARG GLU LYS HIS GLN ASP PHE TRP VAL GLU ALA GLU LEU SEQRES 6 B 362 TRP GLU LEU VAL MET ASP ALA TYR GLN HIS THR SER ASP SEQRES 7 B 362 PRO ALA LEU LYS ALA GLU LEU LYS THR GLN ILE ASP ASP SEQRES 8 B 362 VAL TYR ASP GLY THR VAL ALA LYS TYR GLY GLN ASP TRP SEQRES 9 B 362 THR ASN ASN PRO PHE ASN ASP ASP ILE MET TRP TRP ALA SEQRES 10 B 362 MET GLY SER ALA ARG ALA TYR GLN ILE THR GLY ASN PRO SEQRES 11 B 362 ARG TYR LEU GLU ALA ALA ARG ASP HIS PHE ASP PHE VAL SEQRES 12 B 362 TYR ASP THR GLN TRP ASP GLU GLU PHE ALA ASN GLY GLY SEQRES 13 B 362 ILE TRP TRP LEU ASN SER ASP HIS ASN THR LYS ASN ALA SEQRES 14 B 362 CYS ILE ASN PHE PRO ALA ALA GLN ALA ALA LEU TYR LEU SEQRES 15 B 362 TYR ASP ILE THR LYS ASP GLU HIS TYR LEU ASN ALA ALA SEQRES 16 B 362 THR LYS ILE PHE ARG TRP GLY LYS THR MET LEU THR ASP SEQRES 17 B 362 GLY ASN GLY LYS VAL PHE ASP ARG ILE GLU ILE GLU HIS SEQRES 18 B 362 GLY ALA VAL PRO ASP ALA THR HIS TYR ASN GLN GLY THR SEQRES 19 B 362 TYR ILE GLY SER ALA VAL GLY LEU TYR LYS ALA THR GLY SEQRES 20 B 362 ASN ALA VAL TYR LEU ASP ASP ALA VAL LYS ALA ALA LYS SEQRES 21 B 362 PHE THR LYS ASN HIS LEU VAL ASP SER ASN GLY VAL LEU SEQRES 22 B 362 ASN TYR GLU GLY PRO ASN GLY ASP LEU LYS GLY GLY LYS SEQRES 23 B 362 THR ILE LEU MET ARG ASN LEU ALA HIS LEU GLN LYS THR SEQRES 24 B 362 LEU ASP GLU THR GLY GLN TYR PRO GLU PHE SER ALA GLU SEQRES 25 B 362 PHE ASP GLU TRP LEU ALA PHE ASN ILE GLU MET ALA TRP SEQRES 26 B 362 SER HIS GLN ASN SER ASP HIS ILE VAL ASP GLY ASN TRP SEQRES 27 B 362 ALA GLY GLN LEU LEU SER GLY THR TYR GLU SER TRP SER SEQRES 28 B 362 SER ALA ALA ALA VAL GLN ALA LEU ASN GLY ILE SEQRES 1 E 4 UNK UNK UNK UNK HET EDO A 601 4 HET PBW A 602 12 HET M96 A 603 11 HET MAN A 604 11 HET EDO B 601 4 HET PBW B 602 12 HET M96 B 603 11 HET MAN B 604 11 HETNAM EDO 1,2-ETHANEDIOL HETNAM PBW (1~{S},4~{S},5~{R})-6-(HYDROXYMETHYL)CYCLOHEXANE-1,2,3, HETNAM 2 PBW 4,5-PENTOL HETNAM M96 (1~{S},2~{R},3~{S},4~{R},5~{R})-5-(HYDROXYMETHYL) HETNAM 2 M96 CYCLOHEXANE-1,2,3,4-TETROL HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 PBW 2(C7 H14 O6) FORMUL 6 M96 2(C7 H14 O5) FORMUL 7 MAN 2(C6 H12 O6) FORMUL 12 HOH *583(H2 O) HELIX 1 AA1 SER A 39 PHE A 52 1 14 HELIX 2 AA2 ASP A 71 THR A 89 1 19 HELIX 3 AA3 ASP A 91 GLY A 114 1 24 HELIX 4 AA4 PHE A 122 GLY A 141 1 20 HELIX 5 AA5 ASN A 142 TRP A 161 1 20 HELIX 6 AA6 ALA A 182 LYS A 200 1 19 HELIX 7 AA7 ASP A 201 THR A 220 1 20 HELIX 8 AA8 THR A 241 GLY A 260 1 20 HELIX 9 AA9 ASN A 261 LEU A 279 1 19 HELIX 10 AB1 GLY A 298 GLY A 317 1 20 HELIX 11 AB2 TYR A 319 SER A 339 1 21 HELIX 12 AB3 GLU A 361 LEU A 372 1 12 HELIX 13 AB4 SER B 39 PHE B 52 1 14 HELIX 14 AB5 ASP B 71 THR B 89 1 19 HELIX 15 AB6 ASP B 91 GLY B 114 1 24 HELIX 16 AB7 PHE B 122 GLY B 141 1 20 HELIX 17 AB8 ASN B 142 TRP B 161 1 20 HELIX 18 AB9 ALA B 182 LYS B 200 1 19 HELIX 19 AC1 ASP B 201 THR B 220 1 20 HELIX 20 AC2 THR B 241 GLY B 260 1 20 HELIX 21 AC3 ASN B 261 LEU B 279 1 19 HELIX 22 AC4 GLY B 298 GLY B 317 1 20 HELIX 23 AC5 TYR B 319 HIS B 340 1 22 HELIX 24 AC6 GLU B 361 LEU B 372 1 12 SHEET 1 AA1 2 TRP A 53 ASP A 54 0 SHEET 2 AA1 2 MET A 59 PHE A 60 -1 O MET A 59 N ASP A 54 SHEET 1 AA2 2 THR A 179 ASN A 181 0 SHEET 2 AA2 2 ARG A 229 GLU A 231 -1 O ILE A 230 N LYS A 180 SHEET 1 AA3 2 TRP B 53 ASP B 54 0 SHEET 2 AA3 2 MET B 59 PHE B 60 -1 O MET B 59 N ASP B 54 SHEET 1 AA4 2 THR B 179 ASN B 181 0 SHEET 2 AA4 2 ARG B 229 GLU B 231 -1 O ILE B 230 N LYS B 180 LINK OD2 ASP A 124 C1' PBW A 602 1555 1555 1.44 LINK O6' PBW A 602 C1 M96 A 603 1555 1555 1.41 LINK O6 M96 A 603 C1 MAN A 604 1555 1555 1.41 LINK OD2 ASP B 124 C1' PBW B 602 1555 1555 1.48 LINK O6' PBW B 602 C1 M96 B 603 1555 1555 1.41 LINK O6 M96 B 603 C1 MAN B 604 1555 1555 1.42 CISPEP 1 GLY A 290 PRO A 291 0 6.12 CISPEP 2 GLY B 290 PRO B 291 0 9.18 CRYST1 47.373 51.087 66.198 93.61 92.36 98.21 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021109 0.003047 0.001084 0.00000 SCALE2 0.000000 0.019777 0.001379 0.00000 SCALE3 0.000000 0.000000 0.015156 0.00000