HEADER PEPTIDE BINDING PROTEIN 10-JUN-20 6ZC8
TITLE SMALL-MOLECULE INHIBITORS OF THE PDZ DOMAIN OF DISHEVELLED PROTEINS
TITLE 2 INTERRUPT WNT SIGNALLING
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-3;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: DISHEVELLED-3,DSH HOMOLOG 3;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DVL3, KIAA0208;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET32
KEYWDS PDZ, DVL, INHIBITORS, WNT, SIGNALLING, PEPTIDE BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.ROSKE,U.HEINEMANN,H.OSCHKINAT
REVDAT 3 24-JAN-24 6ZC8 1 REMARK
REVDAT 2 20-JUL-22 6ZC8 1 JRNL
REVDAT 1 23-JUN-21 6ZC8 0
JRNL AUTH Y.ROSKE,U.HEINEMANN,H.OSCHKINAT,N.KAMDEM,D.KOVALSKYY,
JRNL AUTH 2 M.O.PLATONOV,O.M.BALINSKYI,A.KREUCHWIG,J.SAUPE,L.FANG,
JRNL AUTH 3 A.DIEHL,P.SCHMIEDER,G.KRAUSE,J.RADEMANN,W.BIRCHMEIER
JRNL TITL SMALL-MOLECULE INHIBITORS OF THE PDZ DOMAIN OF DISHEVELLED
JRNL TITL 2 PROTEINS INTERRUPT WNT SIGNALLING
JRNL REF J.MAGN.RESON. 2021
JRNL REFN ISSN 0022-2364
JRNL DOI 10.5194/MR-2-355-2021
REMARK 2
REMARK 2 RESOLUTION. 2.76 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0258
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.35
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 8069
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.247
REMARK 3 R VALUE (WORKING SET) : 0.244
REMARK 3 FREE R VALUE : 0.285
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 425
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83
REMARK 3 REFLECTION IN BIN (WORKING SET) : 571
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.2780
REMARK 3 BIN FREE R VALUE SET COUNT : 30
REMARK 3 BIN FREE R VALUE : 0.3420
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1320
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 68
REMARK 3 SOLVENT ATOMS : 29
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.80
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.02000
REMARK 3 B22 (A**2) : 1.02000
REMARK 3 B33 (A**2) : -3.30000
REMARK 3 B12 (A**2) : 0.51000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): NULL
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.276
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1406 ; 0.005 ; 0.013
REMARK 3 BOND LENGTHS OTHERS (A): 1329 ; 0.005 ; 0.018
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1905 ; 1.083 ; 1.705
REMARK 3 BOND ANGLES OTHERS (DEGREES): 3071 ; 1.204 ; 1.620
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 172 ; 4.897 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;38.938 ;24.333
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 241 ;16.938 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.074 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 189 ; 0.038 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1566 ; 0.007 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 262 ; 0.004 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2732 ; 0.310 ; 3.000
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 243 A 336
REMARK 3 ORIGIN FOR THE GROUP (A): 42.7089 -17.5607 10.9531
REMARK 3 T TENSOR
REMARK 3 T11: 0.1320 T22: 0.0648
REMARK 3 T33: 0.0094 T12: -0.0118
REMARK 3 T13: 0.0143 T23: -0.0180
REMARK 3 L TENSOR
REMARK 3 L11: 2.8023 L22: 1.4444
REMARK 3 L33: 2.9996 L12: 0.2665
REMARK 3 L13: 0.4747 L23: -0.8663
REMARK 3 S TENSOR
REMARK 3 S11: -0.0073 S12: -0.1274 S13: 0.1222
REMARK 3 S21: -0.0409 S22: -0.0224 S23: -0.0073
REMARK 3 S31: -0.1974 S32: -0.0431 S33: 0.0297
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 246 B 336
REMARK 3 ORIGIN FOR THE GROUP (A): 24.5808 -26.2882 -1.5590
REMARK 3 T TENSOR
REMARK 3 T11: 0.0355 T22: 0.1708
REMARK 3 T33: 0.0180 T12: -0.0156
REMARK 3 T13: 0.0118 T23: 0.0107
REMARK 3 L TENSOR
REMARK 3 L11: 2.9923 L22: 2.8013
REMARK 3 L33: 3.1310 L12: 1.3915
REMARK 3 L13: -0.5999 L23: -0.4274
REMARK 3 S TENSOR
REMARK 3 S11: -0.0576 S12: 0.0806 S13: 0.1184
REMARK 3 S21: 0.0103 S22: 0.0788 S23: -0.0375
REMARK 3 S31: 0.1525 S32: -0.6197 S33: -0.0212
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 6ZC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-20.
REMARK 100 THE DEPOSITION ID IS D_1292109271.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-MAY-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8495
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760
REMARK 200 RESOLUTION RANGE LOW (A) : 33.350
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 12.60
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 2F0A
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 66.92
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULPHATE, 12% GLYCEROL,
REMARK 280 0.1 M TRIS-HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z
REMARK 290 5555 Y,-X+Y,Z+1/3
REMARK 290 6555 X-Y,X,Z+2/3
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+1/3
REMARK 290 11555 -X+Y,Y,-Z
REMARK 290 12555 X,X-Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.88633
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.77267
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.88633
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.77267
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.88633
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 87.77267
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 43.88633
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 87.77267
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 242
REMARK 465 ASP A 273
REMARK 465 GLY A 274
REMARK 465 ALA B 242
REMARK 465 MET B 243
REMARK 465 SER B 244
REMARK 465 LEU B 245
REMARK 465 SER B 268
REMARK 465 ASN B 269
REMARK 465 GLU B 270
REMARK 465 ARG B 271
REMARK 465 GLY B 272
REMARK 465 ASP B 273
REMARK 465 GLY B 274
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 SER A 244 OG
REMARK 470 LEU A 245 CG CD1 CD2
REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OD2 ASP A 290 O HOH B 512 11655 2.08
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 303 -119.60 52.46
REMARK 500 ASN B 303 -126.03 57.88
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH B 512 DISTANCE = 6.58 ANGSTROMS
REMARK 525 HOH B 513 DISTANCE = 8.09 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue QEK A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue QEK B 401
DBREF 6ZC8 A 243 335 UNP Q92997 DVL3_HUMAN 243 335
DBREF 6ZC8 B 243 335 UNP Q92997 DVL3_HUMAN 243 335
SEQADV 6ZC8 ALA A 242 UNP Q92997 EXPRESSION TAG
SEQADV 6ZC8 SER A 336 UNP Q92997 EXPRESSION TAG
SEQADV 6ZC8 ALA B 242 UNP Q92997 EXPRESSION TAG
SEQADV 6ZC8 SER B 336 UNP Q92997 EXPRESSION TAG
SEQRES 1 A 95 ALA MET SER LEU ASN ILE ILE THR VAL THR LEU ASN MET
SEQRES 2 A 95 GLU LYS TYR ASN PHE LEU GLY ILE SER ILE VAL GLY GLN
SEQRES 3 A 95 SER ASN GLU ARG GLY ASP GLY GLY ILE TYR ILE GLY SER
SEQRES 4 A 95 ILE MET LYS GLY GLY ALA VAL ALA ALA ASP GLY ARG ILE
SEQRES 5 A 95 GLU PRO GLY ASP MET LEU LEU GLN VAL ASN GLU ILE ASN
SEQRES 6 A 95 PHE GLU ASN MET SER ASN ASP ASP ALA VAL ARG VAL LEU
SEQRES 7 A 95 ARG GLU ILE VAL HIS LYS PRO GLY PRO ILE THR LEU THR
SEQRES 8 A 95 VAL ALA LYS SER
SEQRES 1 B 95 ALA MET SER LEU ASN ILE ILE THR VAL THR LEU ASN MET
SEQRES 2 B 95 GLU LYS TYR ASN PHE LEU GLY ILE SER ILE VAL GLY GLN
SEQRES 3 B 95 SER ASN GLU ARG GLY ASP GLY GLY ILE TYR ILE GLY SER
SEQRES 4 B 95 ILE MET LYS GLY GLY ALA VAL ALA ALA ASP GLY ARG ILE
SEQRES 5 B 95 GLU PRO GLY ASP MET LEU LEU GLN VAL ASN GLU ILE ASN
SEQRES 6 B 95 PHE GLU ASN MET SER ASN ASP ASP ALA VAL ARG VAL LEU
SEQRES 7 B 95 ARG GLU ILE VAL HIS LYS PRO GLY PRO ILE THR LEU THR
SEQRES 8 B 95 VAL ALA LYS SER
HET QEK A 401 34
HET QEK B 401 34
HETNAM QEK 2-[[3-CHLORANYL-4-[(1~{H}-INDAZOL-3-YLCARBONYLAMINO)
HETNAM 2 QEK METHYL]PHENYL]SULFONYLAMINO]-5-METHYL-BENZOIC ACID
FORMUL 3 QEK 2(C23 H19 CL N4 O5 S)
FORMUL 5 HOH *29(H2 O)
HELIX 1 AA1 GLY A 285 GLY A 291 1 7
HELIX 2 AA2 SER A 311 LYS A 325 1 15
HELIX 3 AA3 GLY B 285 GLY B 291 1 7
HELIX 4 AA4 SER B 311 LYS B 325 1 15
SHEET 1 AA1 4 ASN A 246 LEU A 252 0
SHEET 2 AA1 4 ILE A 329 LYS A 335 -1 O LYS A 335 N ASN A 246
SHEET 3 AA1 4 MET A 298 VAL A 302 -1 N GLN A 301 O THR A 332
SHEET 4 AA1 4 ILE A 305 ASN A 306 -1 O ILE A 305 N VAL A 302
SHEET 1 AA2 2 ILE A 262 GLY A 266 0
SHEET 2 AA2 2 ILE A 276 ILE A 281 -1 O TYR A 277 N VAL A 265
SHEET 1 AA3 5 ILE B 247 THR B 251 0
SHEET 2 AA3 5 THR B 330 ALA B 334 -1 O LEU B 331 N VAL B 250
SHEET 3 AA3 5 MET B 298 VAL B 302 -1 N GLN B 301 O THR B 332
SHEET 4 AA3 5 ILE B 276 ILE B 281 -1 N ILE B 276 O LEU B 299
SHEET 5 AA3 5 ILE B 262 VAL B 265 -1 N SER B 263 O GLY B 279
SHEET 1 AA4 4 ILE B 247 THR B 251 0
SHEET 2 AA4 4 THR B 330 ALA B 334 -1 O LEU B 331 N VAL B 250
SHEET 3 AA4 4 MET B 298 VAL B 302 -1 N GLN B 301 O THR B 332
SHEET 4 AA4 4 ILE B 305 ASN B 306 -1 O ILE B 305 N VAL B 302
SITE 1 AC1 8 PHE A 259 LEU A 260 GLY A 261 ILE A 262
SITE 2 AC1 8 MET A 282 ARG A 320 VAL A 323 HIS A 324
SITE 1 AC2 12 PHE B 259 LEU B 260 GLY B 261 ILE B 262
SITE 2 AC2 12 SER B 263 ILE B 264 MET B 282 LEU B 319
SITE 3 AC2 12 ARG B 320 VAL B 323 HIS B 324 HOH B 505
CRYST1 89.345 89.345 131.659 90.00 90.00 120.00 P 64 2 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011193 0.006462 0.000000 0.00000
SCALE2 0.000000 0.012924 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007595 0.00000