HEADER PROTEIN BINDING 15-JUN-20 6ZDV
TITLE CRYSTAL STRUCTURE OF STABILIZED A2A ADENOSINE RECEPTOR A2AR-STAR2-BRIL
TITLE 2 IN COMPLEX WITH CHROMONE 5D
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ADENOSINE RECEPTOR A2A,SOLUBLE CYTOCHROME B562,ADENOSINE
COMPND 3 RECEPTOR A2A;
COMPND 4 CHAIN: A;
COMPND 5 SYNONYM: CYTOCHROME B-562;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606, 562;
SOURCE 5 GENE: ADORA2A, ADORA2, CYBC;
SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111
KEYWDS G PROTEIN-COUPLED RECEPTOR, MEMBRANE PROTEIN, RECEPTOR, PROTEIN
KEYWDS 2 BINDING
EXPDTA X-RAY DIFFRACTION
AUTHOR G.VERDON,W.JESPERS,J.AZUAJE,M.MAJELLARO,H.KERANEN,X.GARCIA-MERA,
AUTHOR 2 M.CONGREVE,F.DEFLORIAN,C.DE GRAAF,A.ZHUKOV,A.DORE,J.MASON,J.AQVIST,
AUTHOR 3 R.COOKE,E.SOTELO,H.GUTIERREZ-DE-TERAN
REVDAT 4 23-OCT-24 6ZDV 1 REMARK
REVDAT 3 24-JAN-24 6ZDV 1 REMARK
REVDAT 2 16-DEC-20 6ZDV 1 JRNL
REVDAT 1 16-SEP-20 6ZDV 0
JRNL AUTH W.JESPERS,G.VERDON,J.AZUAJE,M.MAJELLARO,H.KERANEN,
JRNL AUTH 2 X.GARCIA-MERA,M.CONGREVE,F.DEFLORIAN,C.DE GRAAF,A.ZHUKOV,
JRNL AUTH 3 A.S.DORE,J.S.MASON,J.AQVIST,R.M.COOKE,E.SOTELO,
JRNL AUTH 4 H.GUTIERREZ-DE-TERAN
JRNL TITL X-RAY CRYSTALLOGRAPHY AND FREE ENERGY CALCULATIONS REVEAL
JRNL TITL 2 THE BINDING MECHANISM OF A 2A ADENOSINE RECEPTOR
JRNL TITL 3 ANTAGONISTS.
JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 59 16536 2020
JRNL REFN ESSN 1521-3773
JRNL PMID 32542862
JRNL DOI 10.1002/ANIE.202003788
REMARK 2
REMARK 2 RESOLUTION. 2.13 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.7
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.80
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 84.0
REMARK 3 NUMBER OF REFLECTIONS : 25511
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.216
REMARK 3 R VALUE (WORKING SET) : 0.215
REMARK 3 FREE R VALUE : 0.224
REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 FREE R VALUE TEST SET COUNT : 1260
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.20
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 11.29
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL
REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : 0.1961
REMARK 3 BIN FREE R VALUE : 0.2630
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 27
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2938
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 277
REMARK 3 SOLVENT ATOMS : 89
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.69
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -1.88180
REMARK 3 B22 (A**2) : 5.49510
REMARK 3 B33 (A**2) : -3.61330
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.247
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.176
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.248
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.178
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3309 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4479 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1199 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 528 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3282 ; 10.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 441 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3059 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.023
REMARK 3 BOND ANGLES (DEGREES) : 1.59
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.56
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.16
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|-1 - A|208 A|219 - A|305 A|1201 - A|1201 }
REMARK 3 ORIGIN FOR THE GROUP (A): 22.0383 187.0307 17.8505
REMARK 3 T TENSOR
REMARK 3 T11: -0.0034 T22: 0.0306
REMARK 3 T33: -0.053 T12: -0.006
REMARK 3 T13: -0.0007 T23: -0.0029
REMARK 3 L TENSOR
REMARK 3 L11: 0.1356 L22: 0.2505
REMARK 3 L33: 0.0821 L12: 0.0971
REMARK 3 L13: -0.2004 L23: 0.0303
REMARK 3 S TENSOR
REMARK 3 S11: -0 S12: -0.0555 S13: -0.0355
REMARK 3 S21: -0.0555 S22: -0.0138 S23: 0.0447
REMARK 3 S31: -0.0355 S32: 0.0447 S33: 0.0139
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|1001 - A|1106 }
REMARK 3 ORIGIN FOR THE GROUP (A): -1.8344 234.8934 19.9907
REMARK 3 T TENSOR
REMARK 3 T11: -0.1015 T22: -0.2021
REMARK 3 T33: 0.2514 T12: 0.0925
REMARK 3 T13: 0.0346 T23: 0.0495
REMARK 3 L TENSOR
REMARK 3 L11: 0.2998 L22: 0.5443
REMARK 3 L33: 0 L12: -0.7667
REMARK 3 L13: -0.0761 L23: -0.5405
REMARK 3 S TENSOR
REMARK 3 S11: 0.107 S12: -0.5054 S13: -0.2474
REMARK 3 S21: -0.5054 S22: 0.1966 S23: -0.0644
REMARK 3 S31: -0.2474 S32: -0.0644 S33: -0.3036
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6ZDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-20.
REMARK 100 THE DEPOSITION ID IS D_1292109402.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 14-MAR-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25511
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130
REMARK 200 RESOLUTION RANGE LOW (A) : 42.808
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8
REMARK 200 DATA REDUNDANCY : 9.400
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5IU4
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 52.43
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, SODIUM CITRATE, SODIUM
REMARK 280 THIOCYANATE, 2,5 HEXANEDIOL, LIPIDIC CUBIC PHASE, TEMPERATURE
REMARK 280 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -X,Y,-Z+1/2
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.04250
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.04250
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 19.70700
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.91650
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 19.70700
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.91650
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.04250
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 19.70700
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.91650
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.04250
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 19.70700
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.91650
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19620 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ASP A -8
REMARK 465 TYR A -7
REMARK 465 LYS A -6
REMARK 465 ASP A -5
REMARK 465 ASP A -4
REMARK 465 ASP A -3
REMARK 465 ASP A -2
REMARK 465 GLY A -1
REMARK 465 THR A 1044
REMARK 465 PRO A 1045
REMARK 465 PRO A 1046
REMARK 465 LYS A 1047
REMARK 465 LEU A 1048
REMARK 465 GLU A 1049
REMARK 465 ASP A 1050
REMARK 465 LYS A 1051
REMARK 465 SER A 1052
REMARK 465 PRO A 1053
REMARK 465 ASP A 1054
REMARK 465 SER A 1055
REMARK 465 PRO A 1056
REMARK 465 GLU A 1057
REMARK 465 MET A 1058
REMARK 465 LYS A 1059
REMARK 465 ASP A 1060
REMARK 465 PHE A 1061
REMARK 465 ARG A 1062
REMARK 465 HIS A 1063
REMARK 465 HIS A 306
REMARK 465 VAL A 307
REMARK 465 LEU A 308
REMARK 465 ARG A 309
REMARK 465 GLN A 310
REMARK 465 GLN A 311
REMARK 465 GLU A 312
REMARK 465 PRO A 313
REMARK 465 PHE A 314
REMARK 465 LYS A 315
REMARK 465 ALA A 316
REMARK 465 ALA A 317
REMARK 465 ALA A 318
REMARK 465 HIS A 319
REMARK 465 HIS A 320
REMARK 465 HIS A 321
REMARK 465 HIS A 322
REMARK 465 HIS A 323
REMARK 465 HIS A 324
REMARK 465 HIS A 325
REMARK 465 HIS A 326
REMARK 465 HIS A 327
REMARK 465 HIS A 328
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A1042 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE2 GLU A 1018 NZ LYS A 1095 1.90
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 LEU A 208 C ALA A1001 N 0.194
REMARK 500 GLU A 219 C ARG A 220 N 0.238
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 SER A 6 CA - C - O ANGL. DEV. = 12.7 DEGREES
REMARK 500 TRP A 29 CA - C - O ANGL. DEV. = 12.7 DEGREES
REMARK 500 LEU A 208 O - C - N ANGL. DEV. = -33.8 DEGREES
REMARK 500 ALA A1001 C - N - CA ANGL. DEV. = 29.8 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A1022 -168.30 -123.99
REMARK 500 TYR A1101 -62.01 -133.38
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 TRP A 29 -11.32
REMARK 500 TRP A 29 -10.70
REMARK 500 LEU A 208 -33.49
REMARK 500 GLU A 219 11.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLB A 1206
REMARK 610 OLA A 1207
REMARK 610 OLA A 1208
REMARK 610 OLA A 1209
REMARK 610 OLA A 1210
REMARK 610 OLA A 1211
REMARK 610 OLA A 1212
REMARK 610 OLA A 1213
REMARK 610 OLA A 1214
REMARK 610 OLA A 1215
REMARK 610 OLA A 1216
REMARK 610 OLA A 1217
REMARK 610 OLA A 1218
REMARK 610 OLA A 1219
REMARK 610 OLA A 1220
REMARK 610 OLC A 1221
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A1202 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 52 OD1
REMARK 620 2 SER A 91 OG 117.8
REMARK 620 3 HOH A1338 O 101.4 108.6
REMARK 620 4 HOH A1354 O 72.8 65.5 74.1
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue QGW A 1201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 1206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1207
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1208
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1210
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1212
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1213
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1215
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1216
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1217
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1218
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1221
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6ZRD RELATED DB: PDB
REMARK 900 COMPLEX WITH CHROMONE 4D
DBREF 6ZDV A 2 208 UNP P29274 AA2AR_HUMAN 2 208
DBREF 6ZDV A 1001 1105 UNP P0ABE7 C562_ECOLX 23 127
DBREF 6ZDV A 219 317 UNP P29274 AA2AR_HUMAN 219 317
SEQADV 6ZDV ASP A -8 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV TYR A -7 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV LYS A -6 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV ASP A -5 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV ASP A -4 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV ASP A -3 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV ASP A -2 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV GLY A -1 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV ALA A 0 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV PRO A 1 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV LEU A 54 UNP P29274 ALA 54 CONFLICT
SEQADV 6ZDV ALA A 88 UNP P29274 THR 88 CONFLICT
SEQADV 6ZDV ALA A 107 UNP P29274 ARG 107 CONFLICT
SEQADV 6ZDV ALA A 122 UNP P29274 LYS 122 CONFLICT
SEQADV 6ZDV ALA A 154 UNP P29274 ASN 154 CONFLICT
SEQADV 6ZDV ALA A 202 UNP P29274 LEU 202 CONFLICT
SEQADV 6ZDV TRP A 1007 UNP P0ABE7 MET 29 CONFLICT
SEQADV 6ZDV ILE A 1102 UNP P0ABE7 HIS 124 CONFLICT
SEQADV 6ZDV LEU A 1106 UNP P0ABE7 LINKER
SEQADV 6ZDV ALA A 235 UNP P29274 LEU 235 CONFLICT
SEQADV 6ZDV ALA A 239 UNP P29274 VAL 239 CONFLICT
SEQADV 6ZDV ALA A 277 UNP P29274 SER 277 CONFLICT
SEQADV 6ZDV ALA A 318 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 319 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 320 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 321 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 322 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 323 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 324 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 325 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 326 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 327 UNP P29274 EXPRESSION TAG
SEQADV 6ZDV HIS A 328 UNP P29274 EXPRESSION TAG
SEQRES 1 A 433 ASP TYR LYS ASP ASP ASP ASP GLY ALA PRO PRO ILE MET
SEQRES 2 A 433 GLY SER SER VAL TYR ILE THR VAL GLU LEU ALA ILE ALA
SEQRES 3 A 433 VAL LEU ALA ILE LEU GLY ASN VAL LEU VAL CYS TRP ALA
SEQRES 4 A 433 VAL TRP LEU ASN SER ASN LEU GLN ASN VAL THR ASN TYR
SEQRES 5 A 433 PHE VAL VAL SER LEU ALA ALA ALA ASP ILE LEU VAL GLY
SEQRES 6 A 433 VAL LEU ALA ILE PRO PHE ALA ILE THR ILE SER THR GLY
SEQRES 7 A 433 PHE CYS ALA ALA CYS HIS GLY CYS LEU PHE ILE ALA CYS
SEQRES 8 A 433 PHE VAL LEU VAL LEU ALA GLN SER SER ILE PHE SER LEU
SEQRES 9 A 433 LEU ALA ILE ALA ILE ASP ARG TYR ILE ALA ILE ALA ILE
SEQRES 10 A 433 PRO LEU ARG TYR ASN GLY LEU VAL THR GLY THR ARG ALA
SEQRES 11 A 433 ALA GLY ILE ILE ALA ILE CYS TRP VAL LEU SER PHE ALA
SEQRES 12 A 433 ILE GLY LEU THR PRO MET LEU GLY TRP ASN ASN CYS GLY
SEQRES 13 A 433 GLN PRO LYS GLU GLY LYS ALA HIS SER GLN GLY CYS GLY
SEQRES 14 A 433 GLU GLY GLN VAL ALA CYS LEU PHE GLU ASP VAL VAL PRO
SEQRES 15 A 433 MET ASN TYR MET VAL TYR PHE ASN PHE PHE ALA CYS VAL
SEQRES 16 A 433 LEU VAL PRO LEU LEU LEU MET LEU GLY VAL TYR LEU ARG
SEQRES 17 A 433 ILE PHE ALA ALA ALA ARG ARG GLN LEU ALA ASP LEU GLU
SEQRES 18 A 433 ASP ASN TRP GLU THR LEU ASN ASP ASN LEU LYS VAL ILE
SEQRES 19 A 433 GLU LYS ALA ASP ASN ALA ALA GLN VAL LYS ASP ALA LEU
SEQRES 20 A 433 THR LYS MET ARG ALA ALA ALA LEU ASP ALA GLN LYS ALA
SEQRES 21 A 433 THR PRO PRO LYS LEU GLU ASP LYS SER PRO ASP SER PRO
SEQRES 22 A 433 GLU MET LYS ASP PHE ARG HIS GLY PHE ASP ILE LEU VAL
SEQRES 23 A 433 GLY GLN ILE ASP ASP ALA LEU LYS LEU ALA ASN GLU GLY
SEQRES 24 A 433 LYS VAL LYS GLU ALA GLN ALA ALA ALA GLU GLN LEU LYS
SEQRES 25 A 433 THR THR ARG ASN ALA TYR ILE GLN LYS TYR LEU GLU ARG
SEQRES 26 A 433 ALA ARG SER THR LEU GLN LYS GLU VAL HIS ALA ALA LYS
SEQRES 27 A 433 SER ALA ALA ILE ILE ALA GLY LEU PHE ALA LEU CYS TRP
SEQRES 28 A 433 LEU PRO LEU HIS ILE ILE ASN CYS PHE THR PHE PHE CYS
SEQRES 29 A 433 PRO ASP CYS SER HIS ALA PRO LEU TRP LEU MET TYR LEU
SEQRES 30 A 433 ALA ILE VAL LEU ALA HIS THR ASN SER VAL VAL ASN PRO
SEQRES 31 A 433 PHE ILE TYR ALA TYR ARG ILE ARG GLU PHE ARG GLN THR
SEQRES 32 A 433 PHE ARG LYS ILE ILE ARG SER HIS VAL LEU ARG GLN GLN
SEQRES 33 A 433 GLU PRO PHE LYS ALA ALA ALA HIS HIS HIS HIS HIS HIS
SEQRES 34 A 433 HIS HIS HIS HIS
HET QGW A1201 25
HET NA A1202 1
HET CLR A1203 28
HET CLR A1204 28
HET CLR A1205 28
HET OLB A1206 15
HET OLA A1207 11
HET OLA A1208 12
HET OLA A1209 7
HET OLA A1210 15
HET OLA A1211 6
HET OLA A1212 7
HET OLA A1213 5
HET OLA A1214 7
HET OLA A1215 15
HET OLA A1216 11
HET OLA A1217 17
HET OLA A1218 10
HET OLA A1219 7
HET OLA A1220 5
HET OLC A1221 17
HETNAM QGW [2-METHYL-3-(4-METHYL-1,3-THIAZOL-2-YL)-4-
HETNAM 2 QGW OXIDANYLIDENE-6-PROPYL-CHROMEN-7-YL] ETHANOATE
HETNAM NA SODIUM ION
HETNAM CLR CHOLESTEROL
HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM OLA OLEIC ACID
HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETSYN OLC 1-OLEOYL-R-GLYCEROL
FORMUL 2 QGW C19 H19 N O4 S
FORMUL 3 NA NA 1+
FORMUL 4 CLR 3(C27 H46 O)
FORMUL 7 OLB C21 H40 O4
FORMUL 8 OLA 14(C18 H34 O2)
FORMUL 22 OLC C21 H40 O4
FORMUL 23 HOH *89(H2 O)
HELIX 1 AA1 PRO A 1 ASN A 34 1 34
HELIX 2 AA2 SER A 35 GLN A 38 5 4
HELIX 3 AA3 ASN A 39 LEU A 58 1 20
HELIX 4 AA4 LEU A 58 SER A 67 1 10
HELIX 5 AA5 CYS A 74 ILE A 108 1 35
HELIX 6 AA6 ILE A 108 VAL A 116 1 9
HELIX 7 AA7 THR A 117 LEU A 137 1 21
HELIX 8 AA8 THR A 138 GLY A 142 5 5
HELIX 9 AA9 LYS A 150 GLN A 157 1 8
HELIX 10 AB1 LEU A 167 VAL A 172 1 6
HELIX 11 AB2 PRO A 173 TYR A 179 1 7
HELIX 12 AB3 VAL A 186 LYS A 1019 1 42
HELIX 13 AB4 ASN A 1022 ALA A 1043 1 22
HELIX 14 AB5 PHE A 1065 GLU A 1081 1 17
HELIX 15 AB6 LYS A 1083 GLN A 1093 1 11
HELIX 16 AB7 GLN A 1093 TYR A 1101 1 9
HELIX 17 AB8 TYR A 1101 CYS A 259 1 47
HELIX 18 AB9 PRO A 266 ILE A 292 1 27
HELIX 19 AC1 ILE A 292 SER A 305 1 14
SHEET 1 AA1 2 CYS A 71 ALA A 73 0
SHEET 2 AA1 2 GLN A 163 ALA A 165 -1 O VAL A 164 N ALA A 72
SSBOND 1 CYS A 71 CYS A 159 1555 1555 2.04
SSBOND 2 CYS A 74 CYS A 146 1555 1555 1.98
SSBOND 3 CYS A 77 CYS A 166 1555 1555 2.02
SSBOND 4 CYS A 259 CYS A 262 1555 1555 1.98
LINK OD1 ASP A 52 NA NA A1202 1555 1555 2.43
LINK OG SER A 91 NA NA A1202 1555 1555 2.72
LINK NA NA A1202 O HOH A1338 1555 1555 2.67
LINK NA NA A1202 O HOH A1354 1555 1555 2.82
SITE 1 AC1 13 TYR A 9 ALA A 63 ILE A 66 SER A 67
SITE 2 AC1 13 LEU A 85 LEU A 167 PHE A 168 MET A 177
SITE 3 AC1 13 LEU A 249 HIS A 250 ASN A 253 TYR A 271
SITE 4 AC1 13 HOH A1320
SITE 1 AC2 5 ASP A 52 SER A 91 ASN A 280 HOH A1338
SITE 2 AC2 5 HOH A1354
SITE 1 AC3 3 LEU A 247 PRO A 248 SER A 263
SITE 1 AC4 6 ALA A 72 ALA A 73 GLY A 76 ILE A 80
SITE 2 AC4 6 CLR A1205 OLB A1206
SITE 1 AC5 5 PHE A 255 CLR A1204 OLB A1206 OLA A1215
SITE 2 AC5 5 HOH A1312
SITE 1 AC6 3 PHE A 258 CLR A1204 CLR A1205
SITE 1 AC7 5 CYS A 28 VAL A 31 TRP A 32 VAL A 46
SITE 2 AC7 5 ALA A 50
SITE 1 AC8 5 THR A 65 THR A 68 PHE A 70 OLA A1215
SITE 2 AC8 5 OLA A1217
SITE 1 AC9 1 PRO A 266
SITE 1 AD1 2 SER A 7 THR A 11
SITE 1 AD2 1 TRP A 29
SITE 1 AD3 5 CYS A 71 CLR A1205 OLA A1208 OLA A1217
SITE 2 AD3 5 HOH A1318
SITE 1 AD4 3 GLY A 5 TYR A 271 HOH A1345
SITE 1 AD5 4 PHE A 255 CYS A 262 OLA A1208 OLA A1215
SITE 1 AD6 3 MET A 140 LEU A 141 TYR A 179
SITE 1 AD7 3 TYR A 43 ALA A 122 TRP A 129
CRYST1 39.414 179.833 140.085 90.00 90.00 90.00 C 2 2 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025372 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005561 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007139 0.00000