data_6ZE9 # _entry.id 6ZE9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.331 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6ZE9 WWPDB D_1292109241 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6ZE9 _pdbx_database_status.recvd_initial_deposition_date 2020-06-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Butt, B.G.' 1 0000-0001-6718-0470 'Graham, S.C.' 2 0000-0003-4547-4034 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Wellcome Open Res' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2398-502X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 5 _citation.language ? _citation.page_first 154 _citation.page_last 154 _citation.title 'Non-native fold of the putative VPS39 zinc finger domain.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.12688/wellcomeopenres.16078.1 _citation.pdbx_database_id_PubMed 32724865 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Butt, B.G.' 1 0000-0001-6718-0470 primary 'Scourfield, E.J.' 2 ? primary 'Graham, S.C.' 3 0000-0003-4547-4034 # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 6ZE9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 104.178 _cell.length_a_esd ? _cell.length_b 104.178 _cell.length_b_esd ? _cell.length_c 39.423 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ZE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vam6/Vps39-like protein' 5073.945 3 ? ? ? 'N-terminal residues MHHHHHHM represent the hexahistidine purification tag and' 2 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 3 water nat water 18.015 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TRAP1-like protein,hVam6p' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MHHHHHHMVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT _entity_poly.pdbx_seq_one_letter_code_can MHHHHHHMVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MET n 1 9 VAL n 1 10 CYS n 1 11 MET n 1 12 VAL n 1 13 CYS n 1 14 LYS n 1 15 LYS n 1 16 LYS n 1 17 ILE n 1 18 GLY n 1 19 ASN n 1 20 SER n 1 21 ALA n 1 22 PHE n 1 23 ALA n 1 24 ARG n 1 25 TYR n 1 26 PRO n 1 27 ASN n 1 28 GLY n 1 29 VAL n 1 30 VAL n 1 31 VAL n 1 32 HIS n 1 33 TYR n 1 34 PHE n 1 35 CYS n 1 36 SER n 1 37 LYS n 1 38 GLU n 1 39 VAL n 1 40 ASN n 1 41 PRO n 1 42 ALA n 1 43 ASP n 1 44 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 44 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VPS39, KIAA0770, TLP, VAM6' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant pLysS _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pOPTH _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VPS39_HUMAN _struct_ref.pdbx_db_accession Q96JC1 _struct_ref.pdbx_db_isoform Q96JC1-2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT _struct_ref.pdbx_align_begin 840 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6ZE9 A 9 ? 44 ? Q96JC1 840 ? 875 ? 840 875 2 1 6ZE9 B 9 ? 44 ? Q96JC1 840 ? 875 ? 840 875 3 1 6ZE9 C 9 ? 44 ? Q96JC1 840 ? 875 ? 840 875 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6ZE9 MET A 1 ? UNP Q96JC1 ? ? 'initiating methionine' -7 1 1 6ZE9 HIS A 2 ? UNP Q96JC1 ? ? 'expression tag' -6 2 1 6ZE9 HIS A 3 ? UNP Q96JC1 ? ? 'expression tag' -5 3 1 6ZE9 HIS A 4 ? UNP Q96JC1 ? ? 'expression tag' -4 4 1 6ZE9 HIS A 5 ? UNP Q96JC1 ? ? 'expression tag' -3 5 1 6ZE9 HIS A 6 ? UNP Q96JC1 ? ? 'expression tag' -2 6 1 6ZE9 HIS A 7 ? UNP Q96JC1 ? ? 'expression tag' -1 7 1 6ZE9 MET A 8 ? UNP Q96JC1 ? ? 'expression tag' 0 8 2 6ZE9 MET B 1 ? UNP Q96JC1 ? ? 'initiating methionine' -7 9 2 6ZE9 HIS B 2 ? UNP Q96JC1 ? ? 'expression tag' -6 10 2 6ZE9 HIS B 3 ? UNP Q96JC1 ? ? 'expression tag' -5 11 2 6ZE9 HIS B 4 ? UNP Q96JC1 ? ? 'expression tag' -4 12 2 6ZE9 HIS B 5 ? UNP Q96JC1 ? ? 'expression tag' -3 13 2 6ZE9 HIS B 6 ? UNP Q96JC1 ? ? 'expression tag' -2 14 2 6ZE9 HIS B 7 ? UNP Q96JC1 ? ? 'expression tag' -1 15 2 6ZE9 MET B 8 ? UNP Q96JC1 ? ? 'expression tag' 0 16 3 6ZE9 MET C 1 ? UNP Q96JC1 ? ? 'initiating methionine' -7 17 3 6ZE9 HIS C 2 ? UNP Q96JC1 ? ? 'expression tag' -6 18 3 6ZE9 HIS C 3 ? UNP Q96JC1 ? ? 'expression tag' -5 19 3 6ZE9 HIS C 4 ? UNP Q96JC1 ? ? 'expression tag' -4 20 3 6ZE9 HIS C 5 ? UNP Q96JC1 ? ? 'expression tag' -3 21 3 6ZE9 HIS C 6 ? UNP Q96JC1 ? ? 'expression tag' -2 22 3 6ZE9 HIS C 7 ? UNP Q96JC1 ? ? 'expression tag' -1 23 3 6ZE9 MET C 8 ? UNP Q96JC1 ? ? 'expression tag' 0 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6ZE9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.51 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 64.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM HEPES pH 7.5, 200 mM ammonium acetate, 45% (v/v) 2-methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-12-06 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.28096 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.28096 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate 92.393 _reflns.entry_id 6ZE9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.90 _reflns.d_resolution_low 46.59 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5148 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.1 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.086 _reflns.pdbx_Rpim_I_all 0.041 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 2.95 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 247 _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.178 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.344 _reflns_shell.pdbx_Rpim_I_all 0.632 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.602 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -14.604 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][2] -14.604 _refine.aniso_B[2][3] 0 _refine.aniso_B[3][3] 29.2081 _refine.B_iso_max ? _refine.B_iso_mean 122.04 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.905 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.details 'Refined using local NCS restraints plus additional restraints for the zinc atoms to enforce chemically plausible coordination.' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6ZE9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.9 _refine.ls_d_res_low 46.59 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5139 _refine.ls_number_reflns_R_free 286 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.1 _refine.ls_percent_reflns_R_free 4.89 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2393 _refine.ls_R_factor_R_free 0.2686 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2376 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.328 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.335 _refine.pdbx_overall_SU_R_Blow_DPI 0.614 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.55 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6ZE9 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.41 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.9 _refine_hist.d_res_low 46.59 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 926 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 922 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 953 ? t_bond_d 2 HARMONIC 'X-RAY DIFFRACTION' ? 1.07 ? 1284 ? t_angle_deg 2 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 315 ? t_dihedral_angle_d 2 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? 157 ? t_gen_planes 5 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 953 ? t_it 10 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 115 ? t_chiral_improper_torsion 5 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? 12 ? t_utility_distance 1 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 15 ? t_utility_angle 1 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 585 ? t_ideal_dist_contact 4 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 3.65 ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 19.6 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.9 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 368 _refine_ls_shell.number_reflns_R_free 18 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.percent_reflns_obs 100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs 0.2558 _refine_ls_shell.R_factor_R_free 0.3028 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2535 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6ZE9 _struct.title 'Non-native fold of the putative VPS39 zinc finger domain' _struct.pdbx_descriptor 'Vam6/Vps39-like protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6ZE9 _struct_keywords.text 'Membrane trafficking, HOPS, ENDOCYTOSIS' _struct_keywords.pdbx_keywords ENDOCYTOSIS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 40 ? THR A 44 ? ASN A 871 THR A 875 5 ? 5 HELX_P HELX_P2 AA2 ASN B 40 ? THR B 44 ? ASN B 871 THR B 875 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 841 A CYS 866 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 10 SG ? ? ? 1_555 B CYS 35 SG ? ? B CYS 841 B CYS 866 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? C CYS 10 SG ? ? ? 1_555 C CYS 35 SG ? ? C CYS 841 C CYS 866 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc1 metalc ? ? A HIS 5 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS -3 A ZN 1001 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc2 metalc ? ? A HIS 7 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS -1 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc3 metalc ? ? A CYS 13 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 844 C ZN 1001 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc4 metalc ? ? A THR 44 O ? ? ? 1_555 E ZN . ZN ? ? A THR 875 B ZN 1001 1_555 ? ? ? ? ? ? ? 1.926 ? ? metalc5 metalc ? ? D ZN . ZN ? ? ? 1_555 B THR 44 O ? ? A ZN 1001 B THR 875 1_555 ? ? ? ? ? ? ? 2.064 ? ? metalc6 metalc ? ? D ZN . ZN ? ? ? 1_555 C CYS 13 SG ? ? A ZN 1001 C CYS 844 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc7 metalc ? ? B HIS 5 NE2 ? ? ? 1_555 E ZN . ZN ? ? B HIS -3 B ZN 1001 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc8 metalc ? ? B HIS 7 NE2 ? ? ? 1_555 E ZN . ZN ? ? B HIS -1 B ZN 1001 1_555 ? ? ? ? ? ? ? 1.993 ? ? metalc9 metalc ? ? B CYS 13 SG ? ? ? 1_555 E ZN . ZN ? ? B CYS 844 B ZN 1001 6_566 ? ? ? ? ? ? ? 2.288 ? ? metalc10 metalc ? ? C HIS 5 NE2 ? ? ? 1_555 F ZN . ZN ? ? C HIS -3 C ZN 1001 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc11 metalc ? ? C HIS 7 NE2 ? ? ? 1_555 F ZN . ZN ? ? C HIS -1 C ZN 1001 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc12 metalc ? ? F ZN . ZN ? ? ? 1_555 G HOH . O ? ? C ZN 1001 C HOH 1101 1_555 ? ? ? ? ? ? ? 2.315 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 29 ? CYS A 35 ? VAL A 860 CYS A 866 AA1 2 HIS A 5 ? LYS A 16 ? HIS A -3 LYS A 847 AA1 3 HIS C 6 ? LYS C 16 ? HIS C -2 LYS C 847 AA1 4 VAL C 29 ? CYS C 35 ? VAL C 860 CYS C 866 AA2 1 CYS B 10 ? LYS B 16 ? CYS B 841 LYS B 847 AA2 2 VAL B 29 ? CYS B 35 ? VAL B 860 CYS B 866 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O PHE A 34 ? O PHE A 865 N MET A 11 ? N MET A 842 AA1 2 3 N VAL A 12 ? N VAL A 843 O MET C 8 ? O MET C 0 AA1 3 4 N LYS C 15 ? N LYS C 846 O VAL C 30 ? O VAL C 861 AA2 1 2 N MET B 11 ? N MET B 842 O PHE B 34 ? O PHE B 865 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1001 ? 4 'binding site for residue ZN A 1001' AC2 Software B ZN 1001 ? 4 'binding site for residue ZN B 1001' AC3 Software C ZN 1001 ? 4 'binding site for residue ZN C 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HIS A 5 ? HIS A -3 . ? 1_555 ? 2 AC1 4 HIS A 7 ? HIS A -1 . ? 1_555 ? 3 AC1 4 THR B 44 ? THR B 875 . ? 1_555 ? 4 AC1 4 CYS C 13 ? CYS C 844 . ? 1_555 ? 5 AC2 4 THR A 44 ? THR A 875 . ? 1_555 ? 6 AC2 4 HIS B 5 ? HIS B -3 . ? 1_555 ? 7 AC2 4 HIS B 7 ? HIS B -1 . ? 1_555 ? 8 AC2 4 CYS B 13 ? CYS B 844 . ? 6_566 ? 9 AC3 4 CYS A 13 ? CYS A 844 . ? 1_555 ? 10 AC3 4 HIS C 7 ? HIS C -1 . ? 1_555 ? 11 AC3 4 HIS C 5 ? HIS C -3 . ? 1_555 ? 12 AC3 4 HOH G . ? HOH C 1101 . ? 1_555 ? # _atom_sites.entry_id 6ZE9 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009599 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009599 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025366 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -7 ? ? ? A . n A 1 2 HIS 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 -4 HIS HIS A . n A 1 5 HIS 5 -3 -3 HIS HIS A . n A 1 6 HIS 6 -2 -2 HIS HIS A . n A 1 7 HIS 7 -1 -1 HIS HIS A . n A 1 8 MET 8 0 0 MET MET A . n A 1 9 VAL 9 840 840 VAL VAL A . n A 1 10 CYS 10 841 841 CYS CYS A . n A 1 11 MET 11 842 842 MET MET A . n A 1 12 VAL 12 843 843 VAL VAL A . n A 1 13 CYS 13 844 844 CYS CYS A . n A 1 14 LYS 14 845 845 LYS LYS A . n A 1 15 LYS 15 846 846 LYS LYS A . n A 1 16 LYS 16 847 847 LYS LYS A . n A 1 17 ILE 17 848 848 ILE ILE A . n A 1 18 GLY 18 849 849 GLY GLY A . n A 1 19 ASN 19 850 850 ASN ASN A . n A 1 20 SER 20 851 851 SER SER A . n A 1 21 ALA 21 852 852 ALA ALA A . n A 1 22 PHE 22 853 853 PHE PHE A . n A 1 23 ALA 23 854 854 ALA ALA A . n A 1 24 ARG 24 855 855 ARG ARG A . n A 1 25 TYR 25 856 856 TYR TYR A . n A 1 26 PRO 26 857 857 PRO PRO A . n A 1 27 ASN 27 858 858 ASN ASN A . n A 1 28 GLY 28 859 859 GLY GLY A . n A 1 29 VAL 29 860 860 VAL VAL A . n A 1 30 VAL 30 861 861 VAL VAL A . n A 1 31 VAL 31 862 862 VAL VAL A . n A 1 32 HIS 32 863 863 HIS HIS A . n A 1 33 TYR 33 864 864 TYR TYR A . n A 1 34 PHE 34 865 865 PHE PHE A . n A 1 35 CYS 35 866 866 CYS CYS A . n A 1 36 SER 36 867 867 SER SER A . n A 1 37 LYS 37 868 868 LYS LYS A . n A 1 38 GLU 38 869 869 GLU GLU A . n A 1 39 VAL 39 870 870 VAL VAL A . n A 1 40 ASN 40 871 871 ASN ASN A . n A 1 41 PRO 41 872 872 PRO PRO A . n A 1 42 ALA 42 873 873 ALA ALA A . n A 1 43 ASP 43 874 874 ASP ASP A . n A 1 44 THR 44 875 875 THR THR A . n B 1 1 MET 1 -7 ? ? ? B . n B 1 2 HIS 2 -6 ? ? ? B . n B 1 3 HIS 3 -5 ? ? ? B . n B 1 4 HIS 4 -4 -4 HIS HIS B . n B 1 5 HIS 5 -3 -3 HIS HIS B . n B 1 6 HIS 6 -2 -2 HIS HIS B . n B 1 7 HIS 7 -1 -1 HIS HIS B . n B 1 8 MET 8 0 0 MET MET B . n B 1 9 VAL 9 840 840 VAL VAL B . n B 1 10 CYS 10 841 841 CYS CYS B . n B 1 11 MET 11 842 842 MET MET B . n B 1 12 VAL 12 843 843 VAL VAL B . n B 1 13 CYS 13 844 844 CYS CYS B . n B 1 14 LYS 14 845 845 LYS LYS B . n B 1 15 LYS 15 846 846 LYS LYS B . n B 1 16 LYS 16 847 847 LYS LYS B . n B 1 17 ILE 17 848 848 ILE ILE B . n B 1 18 GLY 18 849 849 GLY GLY B . n B 1 19 ASN 19 850 850 ASN ASN B . n B 1 20 SER 20 851 851 SER SER B . n B 1 21 ALA 21 852 852 ALA ALA B . n B 1 22 PHE 22 853 853 PHE PHE B . n B 1 23 ALA 23 854 854 ALA ALA B . n B 1 24 ARG 24 855 855 ARG ARG B . n B 1 25 TYR 25 856 856 TYR TYR B . n B 1 26 PRO 26 857 857 PRO PRO B . n B 1 27 ASN 27 858 858 ASN ASN B . n B 1 28 GLY 28 859 859 GLY GLY B . n B 1 29 VAL 29 860 860 VAL VAL B . n B 1 30 VAL 30 861 861 VAL VAL B . n B 1 31 VAL 31 862 862 VAL VAL B . n B 1 32 HIS 32 863 863 HIS HIS B . n B 1 33 TYR 33 864 864 TYR TYR B . n B 1 34 PHE 34 865 865 PHE PHE B . n B 1 35 CYS 35 866 866 CYS CYS B . n B 1 36 SER 36 867 867 SER SER B . n B 1 37 LYS 37 868 868 LYS LYS B . n B 1 38 GLU 38 869 869 GLU GLU B . n B 1 39 VAL 39 870 870 VAL VAL B . n B 1 40 ASN 40 871 871 ASN ASN B . n B 1 41 PRO 41 872 872 PRO PRO B . n B 1 42 ALA 42 873 873 ALA ALA B . n B 1 43 ASP 43 874 874 ASP ASP B . n B 1 44 THR 44 875 875 THR THR B . n C 1 1 MET 1 -7 ? ? ? C . n C 1 2 HIS 2 -6 ? ? ? C . n C 1 3 HIS 3 -5 ? ? ? C . n C 1 4 HIS 4 -4 ? ? ? C . n C 1 5 HIS 5 -3 -3 HIS HIS C . n C 1 6 HIS 6 -2 -2 HIS HIS C . n C 1 7 HIS 7 -1 -1 HIS HIS C . n C 1 8 MET 8 0 0 MET MET C . n C 1 9 VAL 9 840 840 VAL VAL C . n C 1 10 CYS 10 841 841 CYS CYS C . n C 1 11 MET 11 842 842 MET MET C . n C 1 12 VAL 12 843 843 VAL VAL C . n C 1 13 CYS 13 844 844 CYS CYS C . n C 1 14 LYS 14 845 845 LYS LYS C . n C 1 15 LYS 15 846 846 LYS LYS C . n C 1 16 LYS 16 847 847 LYS LYS C . n C 1 17 ILE 17 848 848 ILE ILE C . n C 1 18 GLY 18 849 849 GLY GLY C . n C 1 19 ASN 19 850 850 ASN ASN C . n C 1 20 SER 20 851 851 SER SER C . n C 1 21 ALA 21 852 852 ALA ALA C . n C 1 22 PHE 22 853 853 PHE PHE C . n C 1 23 ALA 23 854 854 ALA ALA C . n C 1 24 ARG 24 855 855 ARG ARG C . n C 1 25 TYR 25 856 856 TYR TYR C . n C 1 26 PRO 26 857 857 PRO PRO C . n C 1 27 ASN 27 858 858 ASN ASN C . n C 1 28 GLY 28 859 859 GLY GLY C . n C 1 29 VAL 29 860 860 VAL VAL C . n C 1 30 VAL 30 861 861 VAL VAL C . n C 1 31 VAL 31 862 862 VAL VAL C . n C 1 32 HIS 32 863 863 HIS HIS C . n C 1 33 TYR 33 864 864 TYR TYR C . n C 1 34 PHE 34 865 865 PHE PHE C . n C 1 35 CYS 35 866 866 CYS CYS C . n C 1 36 SER 36 867 867 SER SER C . n C 1 37 LYS 37 868 868 LYS LYS C . n C 1 38 GLU 38 869 869 GLU GLU C . n C 1 39 VAL 39 870 ? ? ? C . n C 1 40 ASN 40 871 ? ? ? C . n C 1 41 PRO 41 872 ? ? ? C . n C 1 42 ALA 42 873 ? ? ? C . n C 1 43 ASP 43 874 ? ? ? C . n C 1 44 THR 44 875 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN 1 1001 1001 ZN ZN A . E 2 ZN 1 1001 1001 ZN ZN B . F 2 ZN 1 1001 1001 ZN ZN C . G 3 HOH 1 1101 1002 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA tetrameric 4 2 author_and_software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,5 A,C,D,F,G 2 1,2,3,4 B,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6140 ? 1 MORE -177 ? 1 'SSA (A^2)' 9470 ? 2 'ABSA (A^2)' 6700 ? 2 MORE -163 ? 2 'SSA (A^2)' 10430 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 104.1780000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 5_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 39.4230000000 4 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 104.1780000000 0.0000000000 0.0000000000 -1.0000000000 39.4230000000 5 'crystal symmetry operation' 7_555 y,x,-z+1/2 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 19.7115000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 5 ? A HIS -3 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 NE2 ? A HIS 7 ? A HIS -1 ? 1_555 105.7 ? 2 NE2 ? A HIS 5 ? A HIS -3 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 O ? B THR 44 ? B THR 875 ? 1_555 118.8 ? 3 NE2 ? A HIS 7 ? A HIS -1 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 O ? B THR 44 ? B THR 875 ? 1_555 107.6 ? 4 NE2 ? A HIS 5 ? A HIS -3 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 SG ? C CYS 13 ? C CYS 844 ? 1_555 110.8 ? 5 NE2 ? A HIS 7 ? A HIS -1 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 SG ? C CYS 13 ? C CYS 844 ? 1_555 116.1 ? 6 O ? B THR 44 ? B THR 875 ? 1_555 ZN ? D ZN . ? A ZN 1001 ? 1_555 SG ? C CYS 13 ? C CYS 844 ? 1_555 98.3 ? 7 SG ? A CYS 13 ? A CYS 844 ? 1_555 ZN ? F ZN . ? C ZN 1001 ? 1_555 NE2 ? C HIS 5 ? C HIS -3 ? 1_555 112.5 ? 8 SG ? A CYS 13 ? A CYS 844 ? 1_555 ZN ? F ZN . ? C ZN 1001 ? 1_555 NE2 ? C HIS 7 ? C HIS -1 ? 1_555 108.3 ? 9 NE2 ? C HIS 5 ? C HIS -3 ? 1_555 ZN ? F ZN . ? C ZN 1001 ? 1_555 NE2 ? C HIS 7 ? C HIS -1 ? 1_555 109.5 ? 10 SG ? A CYS 13 ? A CYS 844 ? 1_555 ZN ? F ZN . ? C ZN 1001 ? 1_555 O ? G HOH . ? C HOH 1101 ? 1_555 110.9 ? 11 NE2 ? C HIS 5 ? C HIS -3 ? 1_555 ZN ? F ZN . ? C ZN 1001 ? 1_555 O ? G HOH . ? C HOH 1101 ? 1_555 107.0 ? 12 NE2 ? C HIS 7 ? C HIS -1 ? 1_555 ZN ? F ZN . ? C ZN 1001 ? 1_555 O ? G HOH . ? C HOH 1101 ? 1_555 108.5 ? 13 O ? A THR 44 ? A THR 875 ? 1_555 ZN ? E ZN . ? B ZN 1001 ? 1_555 NE2 ? B HIS 5 ? B HIS -3 ? 1_555 108.9 ? 14 O ? A THR 44 ? A THR 875 ? 1_555 ZN ? E ZN . ? B ZN 1001 ? 1_555 NE2 ? B HIS 7 ? B HIS -1 ? 1_555 112.1 ? 15 NE2 ? B HIS 5 ? B HIS -3 ? 1_555 ZN ? E ZN . ? B ZN 1001 ? 1_555 NE2 ? B HIS 7 ? B HIS -1 ? 1_555 96.9 ? 16 O ? A THR 44 ? A THR 875 ? 1_555 ZN ? E ZN . ? B ZN 1001 ? 1_555 SG ? B CYS 13 ? B CYS 844 ? 1_555 128.5 ? 17 NE2 ? B HIS 5 ? B HIS -3 ? 1_555 ZN ? E ZN . ? B ZN 1001 ? 1_555 SG ? B CYS 13 ? B CYS 844 ? 1_555 122.5 ? 18 NE2 ? B HIS 7 ? B HIS -1 ? 1_555 ZN ? E ZN . ? B ZN 1001 ? 1_555 SG ? B CYS 13 ? B CYS 844 ? 1_555 68.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-06-24 2 'Structure model' 1 1 2020-08-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.journal_volume' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 2 'Structure model' '_struct_conn.pdbx_dist_value' 12 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 19 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 21 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 22 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 23 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 24 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 25 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 26 2 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? ? 29.1015 33.387 14.3792 0.2695 ? 0.2467 ? 0.0418 ? -0.1886 ? -0.1582 ? -0.0603 ? 16.6309 ? 0.5013 ? 0.7651 ? 4.3013 ? -1.8664 ? 5.7526 ? 0.0606 ? 0.6243 ? -0.6213 ? 0.6243 ? 0.0907 ? -0.0299 ? -0.6213 ? -0.0299 ? -0.1513 ? 2 'X-RAY DIFFRACTION' ? ? 48.1146 26.3234 5.5119 -0.2744 ? 0.3014 ? 0.2021 ? 0.6079 ? 0.0632 ? -0.2374 ? 16.6309 ? -0 ? 2.8146 ? 16.4273 ? -5.8208 ? 3.7601 ? 0.1474 ? 0.5241 ? -0.4723 ? 0.5241 ? 0.026 ? 0.6639 ? -0.4723 ? 0.6639 ? -0.1734 ? 3 'X-RAY DIFFRACTION' ? ? 23.7353 31.4499 15.9971 0.2101 ? 0.2153 ? 0.0021 ? 0.1387 ? -0.1322 ? -0.0336 ? 15.2652 ? -5.2597 ? 0.0413 ? 1.8668 ? -1.062 ? 1.5673 ? 0.3715 ? 0.4675 ? 0.0563 ? 0.4675 ? 0.2286 ? -0.2159 ? 0.0563 ? -0.2159 ? -0.6001 ? 4 'X-RAY DIFFRACTION' ? ? 5.3527 52.8245 18.1416 -0.2828 ? 0.0834 ? -0.0439 ? 0.2604 ? 0.2588 ? 0.1106 ? 3.5779 ? 0.5775 ? -3.7682 ? 4.2642 ? 1.0552 ? 8.1919 ? 0.0338 ? -0.7737 ? -0.1002 ? -0.7737 ? -1.0546 ? 0.4559 ? -0.1002 ? 0.4559 ? 1.0208 ? 5 'X-RAY DIFFRACTION' ? ? -13.2447 60.8195 27.6767 -0.1985 ? 0.1688 ? 0.053 ? 0.2336 ? -0.1795 ? 0.0118 ? 7.3702 ? -4.7737 ? 2.706 ? 7.4218 ? -0.1105 ? 16.6309 ? -0.0177 ? 0.434 ? -0.9111 ? 0.434 ? 0.0695 ? 0.036 ? -0.9111 ? 0.036 ? -0.0518 ? 6 'X-RAY DIFFRACTION' ? ? 8.2139 51.9784 13.0254 -0.2156 ? 0.0691 ? 0.0298 ? 0.1745 ? 0.2432 ? 0.032 ? 6.7509 ? -3.4058 ? -3.4489 ? 1.7576 ? 2.1635 ? 8.8183 ? 0.2269 ? -0.3458 ? 0.1326 ? -0.3458 ? -0.8281 ? 0.5681 ? 0.1326 ? 0.5681 ? 0.6012 ? 7 'X-RAY DIFFRACTION' ? ? 28.9143 36.1562 13.122 0.1688 ? 0.2101 ? 0.0651 ? -0.1377 ? -0.0892 ? 0.0034 ? 8.9803 ? -2.8462 ? 4.369 ? 0.2366 ? 2.1288 ? 16.6309 ? -0.1601 ? 0.1262 ? -1.025 ? 0.1262 ? 0.4845 ? 0.0569 ? -1.025 ? 0.0569 ? -0.3244 ? 8 'X-RAY DIFFRACTION' ? ? 23.8347 28.4933 -7.8124 0.2762 ? 0.2052 ? 0.1333 ? 0.2459 ? -0.0512 ? -0.1261 ? 0 ? -5.8208 ? -5.43 ? 4.1132 ? 2.3002 ? 16.6309 ? -0.1703 ? 0.0573 ? -0.3575 ? 0.0573 ? 0.3407 ? -0.633 ? -0.3575 ? -0.633 ? -0.1703 ? 9 'X-RAY DIFFRACTION' ? ? 29.4192 39.6751 12.11 0.046 ? 0.2112 ? 0.1166 ? 0.0665 ? -0.0645 ? 0.1773 ? 3.3178 ? -4.8419 ? 2.2315 ? 3.7052 ? -0.4166 ? 10.9851 ? 0.5264 ? 0.1064 ? -0.3611 ? 0.1064 ? -0.0305 ? 0.0471 ? -0.3611 ? 0.0471 ? -0.4959 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A -4 ? ? ? A 848 ? ? '{ A|-4 - A|848 }' 2 'X-RAY DIFFRACTION' 2 ? ? A 849 ? ? ? A 859 ? ? '{ A|849 - A|859 }' 3 'X-RAY DIFFRACTION' 3 ? ? A 860 ? ? ? A 875 ? ? '{ A|860 - A|875 }' 4 'X-RAY DIFFRACTION' 3 ? ? A 1001 ? ? ? A 1001 ? ? '{ A|1001 - A|1001 }' 5 'X-RAY DIFFRACTION' 4 ? ? B -4 ? ? ? B 848 ? ? '{ B|-4 - B|848 }' 6 'X-RAY DIFFRACTION' 5 ? ? B 849 ? ? ? B 859 ? ? '{ B|849 - B|859 }' 7 'X-RAY DIFFRACTION' 6 ? ? B 860 ? ? ? B 875 ? ? '{ B|860 - B|875 }' 8 'X-RAY DIFFRACTION' 6 ? ? B 1001 ? ? ? B 1001 ? ? '{ B|1001 - B|1001 }' 9 'X-RAY DIFFRACTION' 7 ? ? C -3 ? ? ? C 848 ? ? '{ C|-3 - C|848 }' 10 'X-RAY DIFFRACTION' 8 ? ? C 849 ? ? ? C 859 ? ? '{ C|849 - C|859 }' 11 'X-RAY DIFFRACTION' 9 ? ? C 860 ? ? ? C 869 ? ? '{ C|860 - C|869 }' 12 'X-RAY DIFFRACTION' 9 ? ? C 1001 ? ? ? C 1001 ? ? '{ C|1001 - C|1001 }' 13 'X-RAY DIFFRACTION' 9 ? ? C 1002 ? ? ? C 1002 ? ? '{ C|1002 - C|1002 }' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? 0.5.902-gffa11588-dials-1.14 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? 0.5.902-gffa11588-dials-1.14 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? CRANK2 ? ? ? 2.0.229 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 4 # _pdbx_entry_details.entry_id 6ZE9 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN C 858 ? ? -145.38 54.86 2 1 SER C 867 ? ? -111.19 -87.09 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -7 ? A MET 1 2 1 Y 1 A HIS -6 ? A HIS 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 B MET -7 ? B MET 1 5 1 Y 1 B HIS -6 ? B HIS 2 6 1 Y 1 B HIS -5 ? B HIS 3 7 1 Y 1 C MET -7 ? C MET 1 8 1 Y 1 C HIS -6 ? C HIS 2 9 1 Y 1 C HIS -5 ? C HIS 3 10 1 Y 1 C HIS -4 ? C HIS 4 11 1 Y 1 C VAL 870 ? C VAL 39 12 1 Y 1 C ASN 871 ? C ASN 40 13 1 Y 1 C PRO 872 ? C PRO 41 14 1 Y 1 C ALA 873 ? C ALA 42 15 1 Y 1 C ASP 874 ? C ASP 43 16 1 Y 1 C THR 875 ? C THR 44 # _pdbx_audit_support.funding_organization 'Wellcome Trust' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 098406/Z/12/B _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 water HOH # _pdbx_related_exp_data_set.ordinal 1 _pdbx_related_exp_data_set.data_reference 10.17863/CAM.53867 _pdbx_related_exp_data_set.metadata_reference ? _pdbx_related_exp_data_set.data_set_type 'diffraction image data' _pdbx_related_exp_data_set.details ? # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 none ? 2 2 none ? #