HEADER IMMUNE SYSTEM 16-JUN-20 6ZEC TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF A GLYCOSYLATED LYMPHOMA TITLE 2 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB FRAGMENT LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB FRAGMENT HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: EMBRYONIC KIDNEY; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK293F KEYWDS ANTIBODY, FAB, GLYCOSYLATED, GLYCANS, LYMPHOMA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.D.ALLEN,Y.WATANABE,M.CRISPIN,T.A.BOWDEN REVDAT 3 24-JAN-24 6ZEC 1 REMARK REVDAT 2 09-FEB-22 6ZEC 1 JRNL REVDAT 1 30-JUN-21 6ZEC 0 JRNL AUTH G.CHIODIN,J.D.ALLEN,D.J.BRYANT,P.ROCK,E.A.MARTINO, JRNL AUTH 2 B.VALLE-ARGOS,P.J.DURIEZ,Y.WATANABE,I.HENDERSON,J.S.BLACHLY, JRNL AUTH 3 K.J.MCCANN,J.C.STREFFORD,G.PACKHAM,T.B.H.GEIJTENBEEK, JRNL AUTH 4 C.G.FIGDOR,G.W.WRIGHT,L.M.STAUDT,R.BURACK,T.A.BOWDEN, JRNL AUTH 5 M.CRISPIN,F.K.STEVENSON,F.FORCONI JRNL TITL INSERTION OF ATYPICAL GLYCANS INTO THE TUMOR ANTIGEN-BINDING JRNL TITL 2 SITE IDENTIFIES DLBCLS WITH DISTINCT ORIGIN AND BEHAVIOR. JRNL REF BLOOD V. 138 1570 2021 JRNL REFN ESSN 1528-0020 JRNL PMID 34424958 JRNL DOI 10.1182/BLOOD.2021012052 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2765 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3933 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 433 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.885 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3656 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3192 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5017 ; 1.461 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7487 ; 1.346 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ;16.225 ; 5.318 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;33.434 ;23.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;11.939 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;16.568 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4711 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 741 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1843 ; 1.099 ; 2.174 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1842 ; 1.096 ; 2.172 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2328 ; 1.815 ; 3.252 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2329 ; 1.815 ; 3.254 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1813 ; 1.462 ; 2.320 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1814 ; 1.462 ; 2.321 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2687 ; 2.358 ; 3.403 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4034 ; 4.910 ;26.260 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3936 ; 4.625 ;25.520 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 230 REMARK 3 ORIGIN FOR THE GROUP (A): 62.9501 11.3584 56.2546 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: 0.0673 REMARK 3 T33: 0.0241 T12: 0.0084 REMARK 3 T13: 0.0012 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.1130 L22: 0.1968 REMARK 3 L33: 0.6888 L12: 0.0224 REMARK 3 L13: -0.1272 L23: -0.2296 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.0311 S13: -0.0055 REMARK 3 S21: -0.0014 S22: -0.0484 S23: 0.0200 REMARK 3 S31: 0.0071 S32: -0.0186 S33: 0.0647 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 2 H 224 REMARK 3 ORIGIN FOR THE GROUP (A): 78.5585 6.9269 64.4934 REMARK 3 T TENSOR REMARK 3 T11: 0.0378 T22: 0.0445 REMARK 3 T33: 0.0142 T12: -0.0134 REMARK 3 T13: 0.0028 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.2798 L22: 0.1342 REMARK 3 L33: 0.3154 L12: -0.0868 REMARK 3 L13: 0.1537 L23: -0.1899 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.0407 S13: 0.0439 REMARK 3 S21: 0.0309 S22: -0.0425 S23: -0.0319 REMARK 3 S31: -0.0105 S32: 0.0440 S33: 0.0616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ZEC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292108200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 %W/V POLYETHYLENE GLYCOL 3350 0.200 REMARK 280 M MAGNESIUM CHLORIDE 0.100 M BIS-TRIS PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.66500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.39500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.39500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 214 REMARK 465 GLU H -2 REMARK 465 THR H -1 REMARK 465 GLY H 0 REMARK 465 GLN H 1 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 THR H 218 REMARK 465 LYS H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA H 125 O HOH H 401 2.14 REMARK 500 O HOH L 425 O HOH L 596 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -33.19 67.42 REMARK 500 ASN L 138 71.03 59.85 REMARK 500 ASN L 138 60.39 68.70 REMARK 500 ASN L 152 -2.52 79.26 REMARK 500 ALA H 9 -127.37 49.21 REMARK 500 SER H 15 -3.53 87.85 REMARK 500 SER H 15 -17.77 93.50 REMARK 500 SER H 100 -6.39 -144.81 REMARK 500 ASP H 144 64.16 68.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG H 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH H 532 O REMARK 620 2 HOH H 606 O 137.9 REMARK 620 N 1 DBREF 6ZEC L 1 214 PDB 6ZEC 6ZEC 1 214 DBREF 6ZEC H -2 225 PDB 6ZEC 6ZEC -2 225 SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU SER VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL LEU TYR SER SER HIS ASN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO ARG LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE ASN THR LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR TYR THR THR PRO TYR THR PHE SEQRES 9 L 220 GLY GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 238 GLU THR GLY GLN VAL GLN LEU GLN GLN TRP GLY ALA GLY SEQRES 2 H 238 LEU LEU LYS THR SER GLU THR LEU SER LEU THR CYS ALA SEQRES 3 H 238 VAL TYR GLY GLY SER PHE ASN ASN TYR ASN TRP THR TRP SEQRES 4 H 238 ILE ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY SEQRES 5 H 238 GLN ILE ASN HIS SER GLY THR THR ASN TYR ASN PRO SER SEQRES 6 H 238 LEU LYS SER ARG VAL THR MET SER ILE ASP PRO SER GLU SEQRES 7 H 238 ASN GLN PHE SER LEU LYS VAL ARG SER VAL THR ALA ALA SEQRES 8 H 238 ASP THR ALA ILE TYR TYR CYS VAL ARG GLY SER PRO GLU SEQRES 9 H 238 SER SER GLY ASN TYR TRP GLY HIS PHE GLN TYR TRP GLY SEQRES 10 H 238 GLN GLY THR LEU ALA THR VAL SER SER ALA SER THR LYS SEQRES 11 H 238 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 238 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 238 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 238 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 238 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 238 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 238 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 238 LYS LYS VAL GLU PRO LYS SER CYS GLY THR LYS HIS HIS SEQRES 19 H 238 HIS HIS HIS HIS HET NAG A 1 14 HET NAG A 2 14 HET GOL L 301 6 HET GOL H 303 6 HET MG H 304 1 HET MG H 305 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *433(H2 O) HELIX 1 AA1 GLN L 79 VAL L 83 5 5 HELIX 2 AA2 SER L 121 SER L 127 1 7 HELIX 3 AA3 LYS L 183 GLU L 187 1 5 HELIX 4 AA4 SER H 28 ASN H 30 5 3 HELIX 5 AA5 LEU H 63 SER H 65 5 3 HELIX 6 AA6 PRO H 73 GLU H 75 5 3 HELIX 7 AA7 THR H 83 THR H 87 5 5 HELIX 8 AA8 SER H 100 GLY H 100E 5 6 HELIX 9 AA9 SER H 156 ALA H 158 5 3 HELIX 10 AB1 SER H 187 LEU H 189 5 3 HELIX 11 AB2 LYS H 201 ASN H 204 5 4 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA2 6 SER L 10 SER L 14 0 SHEET 2 AA2 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA2 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA2 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA2 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA3 4 SER L 10 SER L 14 0 SHEET 2 AA3 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA3 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 2 LEU L 30 TYR L 30A 0 SHEET 2 AA4 2 LYS L 30F ASN L 31 -1 O LYS L 30F N TYR L 30A SHEET 1 AA5 4 SER L 114 PHE L 118 0 SHEET 2 AA5 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AA5 4 TYR L 173 SER L 182 -1 O SER L 177 N CYS L 134 SHEET 4 AA5 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AA6 4 ALA L 153 LEU L 154 0 SHEET 2 AA6 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA6 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AA6 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AA7 4 GLN H 3 GLY H 8 0 SHEET 2 AA7 4 LEU H 18 TYR H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA7 4 GLN H 77 VAL H 82 -1 O PHE H 78 N CYS H 22 SHEET 4 AA7 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA8 6 GLY H 10 LEU H 12 0 SHEET 2 AA8 6 THR H 107 VAL H 111 1 O THR H 110 N LEU H 12 SHEET 3 AA8 6 ALA H 88 PRO H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 6 TYR H 32 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA8 6 GLU H 46 ILE H 51 -1 O ILE H 51 N TRP H 34 SHEET 6 AA8 6 THR H 57 TYR H 59 -1 O ASN H 58 N GLN H 50 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA9 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA9 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AB1 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AB1 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB2 3 THR H 151 TRP H 154 0 SHEET 2 AB2 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB2 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.13 SSBOND 2 CYS L 134 CYS L 194 1555 1555 1.99 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.12 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.05 LINK ND2 ASN H 33 C1 NAG A 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.43 LINK OG SER H 156 MG MG H 305 1555 1555 2.90 LINK MG MG H 304 O HOH H 532 1555 1555 2.97 LINK MG MG H 304 O HOH H 606 1555 1555 2.91 CISPEP 1 SER L 7 PRO L 8 0 -7.38 CISPEP 2 SER L 7 PRO L 8 0 -2.92 CISPEP 3 THR L 94 PRO L 95 0 -7.17 CISPEP 4 TYR L 140 PRO L 141 0 3.79 CISPEP 5 PHE H 146 PRO H 147 0 -8.21 CISPEP 6 GLU H 148 PRO H 149 0 -7.70 CRYST1 91.330 60.790 84.170 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011881 0.00000