HEADER HYDROLASE 16-JUN-20 6ZEQ TITLE ASPERGILLUS ORYZAE LEUCINE AMINOPEPTIDASE A MATURE ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE AMINOPEPTIDASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEUCYL AMINOPEPTIDASE A,LAPA; COMPND 5 EC: 3.4.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS ORYZAE (STRAIN ATCC 42149 / RIB SOURCE 3 40); SOURCE 4 ORGANISM_COMMON: YELLOW KOJI MOLD; SOURCE 5 ORGANISM_TAXID: 510516; SOURCE 6 STRAIN: ATCC 42149 / RIB 40; SOURCE 7 GENE: LAPA, AO090011000052; SOURCE 8 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: X33 KEYWDS M28 PEPTIDASE, PRODOMAIN, INTRAMOLECULAR CHAPERONE, BIMETALLIC KEYWDS 2 AMINOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.A.WATSON,G.BALTULIONIS REVDAT 2 24-JAN-24 6ZEQ 1 REMARK REVDAT 1 16-JUN-21 6ZEQ 0 JRNL AUTH G.BALTULIONIS,M.BLIGHT,A.ROBIN,D.CHARALAMPOPOULOS,K.A.WATSON JRNL TITL THE ROLE OF PROPEPTIDE-MEDIATED AUTOINHIBITION AND JRNL TITL 2 INTERMOLECULAR CHAPERONE IN THE MATURATION OF COGNATE JRNL TITL 3 CATALYTIC DOMAIN IN LEUCINE AMINOPEPTIDASE. JRNL REF J.STRUCT.BIOL. V. 213 07741 2021 JRNL REFN ESSN 1095-8657 JRNL PMID 33989771 JRNL DOI 10.1016/J.JSB.2021.107741 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.8100 - 4.8600 1.00 3060 137 0.1305 0.1637 REMARK 3 2 4.8600 - 3.8600 1.00 2856 149 0.1015 0.1245 REMARK 3 3 3.8600 - 3.3700 1.00 2833 160 0.1203 0.1615 REMARK 3 4 3.3700 - 3.0600 1.00 2799 145 0.1467 0.1969 REMARK 3 5 3.0600 - 2.8400 1.00 2790 148 0.1691 0.2280 REMARK 3 6 2.8400 - 2.6700 1.00 2766 154 0.1811 0.2367 REMARK 3 7 2.6700 - 2.5400 1.00 2761 159 0.1850 0.2175 REMARK 3 8 2.5400 - 2.4300 1.00 2772 149 0.1979 0.2363 REMARK 3 9 2.4300 - 2.3400 1.00 2738 144 0.2172 0.2726 REMARK 3 10 2.3400 - 2.2600 1.00 2764 137 0.2278 0.2780 REMARK 3 11 2.2600 - 2.1800 1.00 2760 144 0.2514 0.2748 REMARK 3 12 2.1800 - 2.1200 1.00 2744 123 0.2780 0.3114 REMARK 3 13 2.1200 - 2.0700 0.99 2733 116 0.2939 0.3574 REMARK 3 14 2.0700 - 2.0200 0.99 2758 122 0.3123 0.3809 REMARK 3 15 2.0200 - 1.9700 0.99 2733 138 0.3487 0.4160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292108582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43994 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 73.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.22030 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.17800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RTQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRATE, PH = 5.0, 3.2 M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.32000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.32000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.32000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.32000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.32000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 580 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 589 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 739 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 761 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 830 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 835 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 920 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 PHE A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 CYS A 6 REMARK 465 ILE A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 ALA A 18 REMARK 465 ILE A 19 REMARK 465 GLY A 20 REMARK 465 ASP A 21 REMARK 465 HIS A 22 REMARK 465 VAL A 23 REMARK 465 ARG A 24 REMARK 465 SER A 25 REMARK 465 ASP A 26 REMARK 465 ASP A 27 REMARK 465 GLN A 28 REMARK 465 TYR A 29 REMARK 465 VAL A 30 REMARK 465 LEU A 31 REMARK 465 GLU A 32 REMARK 465 LEU A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 THR A 38 REMARK 465 LYS A 39 REMARK 465 VAL A 40 REMARK 465 VAL A 41 REMARK 465 THR A 42 REMARK 465 GLU A 43 REMARK 465 ALA A 44 REMARK 465 GLU A 45 REMARK 465 LYS A 46 REMARK 465 TRP A 47 REMARK 465 ALA A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 ALA A 51 REMARK 465 GLU A 52 REMARK 465 GLY A 53 REMARK 465 LYS A 54 REMARK 465 ARG A 55 REMARK 465 PHE A 56 REMARK 465 PHE A 57 REMARK 465 ASP A 58 REMARK 465 ILE A 59 REMARK 465 THR A 60 REMARK 465 GLU A 61 REMARK 465 ARG A 62 REMARK 465 ALA A 63 REMARK 465 SER A 64 REMARK 465 SER A 65 REMARK 465 LEU A 66 REMARK 465 GLU A 67 REMARK 465 LEU A 68 REMARK 465 ALA A 69 REMARK 465 SER A 70 REMARK 465 ASN A 71 REMARK 465 LYS A 72 REMARK 465 LYS A 73 REMARK 465 GLN A 74 REMARK 465 LYS A 75 REMARK 465 LEU A 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LYS A 250 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 646 O HOH A 744 1.89 REMARK 500 OE1 GLU A 148 O HOH A 501 1.93 REMARK 500 O HOH A 528 O HOH A 673 1.98 REMARK 500 O HOH A 505 O HOH A 693 2.01 REMARK 500 O HOH A 634 O HOH A 886 2.01 REMARK 500 O HOH A 746 O HOH A 899 2.03 REMARK 500 O4 SO4 A 409 O HOH A 502 2.03 REMARK 500 O HOH A 744 O HOH A 940 2.09 REMARK 500 O HOH A 552 O HOH A 903 2.09 REMARK 500 O HOH A 872 O HOH A 955 2.11 REMARK 500 O4 SO4 A 410 O HOH A 503 2.12 REMARK 500 O HOH A 537 O HOH A 708 2.12 REMARK 500 O HOH A 735 O HOH A 757 2.13 REMARK 500 O HOH A 876 O HOH A 882 2.14 REMARK 500 CL CL A 403 O HOH A 660 2.14 REMARK 500 O HOH A 681 O HOH A 710 2.14 REMARK 500 O HOH A 525 O HOH A 834 2.14 REMARK 500 O HOH A 566 O HOH A 852 2.14 REMARK 500 O HOH A 613 O HOH A 726 2.15 REMARK 500 O HOH A 505 O HOH A 606 2.15 REMARK 500 O LYS A 99 O HOH A 504 2.15 REMARK 500 O HOH A 751 O HOH A 900 2.17 REMARK 500 O HOH A 508 O HOH A 828 2.17 REMARK 500 O HOH A 525 O HOH A 768 2.17 REMARK 500 O HOH A 627 O HOH A 812 2.17 REMARK 500 O HOH A 646 O HOH A 763 2.17 REMARK 500 O HOH A 525 O HOH A 861 2.18 REMARK 500 O HOH A 866 O HOH A 896 2.18 REMARK 500 N ALA A 77 O HOH A 505 2.19 REMARK 500 O HOH A 502 O HOH A 596 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 774 O HOH A 889 11655 1.91 REMARK 500 O HOH A 521 O HOH A 527 11654 2.04 REMARK 500 O HOH A 527 O HOH A 582 11654 2.13 REMARK 500 O HOH A 508 O HOH A 865 2545 2.16 REMARK 500 O HOH A 566 O HOH A 823 3655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 184 75.52 -154.13 REMARK 500 ASP A 253 79.97 -106.57 REMARK 500 MET A 262 95.28 75.40 REMARK 500 SER A 376 47.35 -88.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 962 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 176 NE2 REMARK 620 2 ASP A 195 OD1 90.6 REMARK 620 3 ASP A 261 OD1 100.9 90.8 REMARK 620 4 ASP A 261 OD2 93.3 149.1 58.4 REMARK 620 5 HOH A 660 O 95.7 101.2 159.4 108.8 REMARK 620 6 HOH A 699 O 160.6 108.6 81.9 71.5 78.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 195 OD2 REMARK 620 2 GLU A 234 OE2 103.3 REMARK 620 3 HIS A 343 NE2 99.5 110.2 REMARK 620 4 HOH A 660 O 104.7 96.4 138.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZEP RELATED DB: PDB REMARK 900 LAPA PROENZYME DBREF 6ZEQ A 1 377 UNP Q2U1F3 LAPA_ASPOR 1 377 SEQRES 1 A 377 MET ARG PHE LEU PRO CYS ILE ALA THR LEU ALA ALA THR SEQRES 2 A 377 ALA SER ALA LEU ALA ILE GLY ASP HIS VAL ARG SER ASP SEQRES 3 A 377 ASP GLN TYR VAL LEU GLU LEU ALA PRO GLY GLN THR LYS SEQRES 4 A 377 VAL VAL THR GLU ALA GLU LYS TRP ALA LEU ARG ALA GLU SEQRES 5 A 377 GLY LYS ARG PHE PHE ASP ILE THR GLU ARG ALA SER SER SEQRES 6 A 377 LEU GLU LEU ALA SER ASN LYS LYS GLN LYS LEU ALA VAL SEQRES 7 A 377 THR TYR PRO ASP SER VAL GLN HIS ASN GLU THR VAL GLN SEQRES 8 A 377 ASN LEU ILE LYS SER LEU ASP LYS LYS ASN PHE GLU THR SEQRES 9 A 377 VAL LEU GLN PRO PHE SER GLU PHE HIS ASN ARG TYR TYR SEQRES 10 A 377 LYS SER ASP ASN GLY LYS LYS SER SER GLU TRP LEU GLN SEQRES 11 A 377 GLY LYS ILE GLN GLU ILE ILE SER ALA SER GLY ALA LYS SEQRES 12 A 377 GLY VAL THR VAL GLU PRO PHE LYS HIS SER PHE PRO GLN SEQRES 13 A 377 SER SER LEU ILE ALA LYS ILE PRO GLY LYS SER ASP LYS SEQRES 14 A 377 THR ILE VAL LEU GLY ALA HIS GLN ASP SER ILE ASN LEU SEQRES 15 A 377 ASP SER PRO SER GLU GLY ARG ALA PRO GLY ALA ASP ASP SEQRES 16 A 377 ASP GLY SER GLY VAL VAL THR ILE LEU GLU ALA PHE ARG SEQRES 17 A 377 VAL LEU LEU THR ASP GLU LYS VAL ALA ALA GLY GLU ALA SEQRES 18 A 377 PRO ASN THR VAL GLU PHE HIS PHE TYR ALA GLY GLU GLU SEQRES 19 A 377 GLY GLY LEU LEU GLY SER GLN ASP ILE PHE GLU GLN TYR SEQRES 20 A 377 SER GLN LYS SER ARG ASP VAL LYS ALA MET LEU GLN GLN SEQRES 21 A 377 ASP MET THR GLY TYR THR LYS GLY THR THR ASP ALA GLY SEQRES 22 A 377 LYS PRO GLU SER ILE GLY ILE ILE THR ASP ASN VAL ASP SEQRES 23 A 377 GLU ASN LEU THR LYS PHE LEU LYS VAL ILE VAL ASP ALA SEQRES 24 A 377 TYR CYS THR ILE PRO THR VAL ASP SER LYS CYS GLY TYR SEQRES 25 A 377 GLY CYS SER ASP HIS ALA SER ALA THR LYS TYR GLY TYR SEQRES 26 A 377 PRO ALA ALA PHE ALA PHE GLU SER ALA PHE GLY ASP ASP SEQRES 27 A 377 SER PRO TYR ILE HIS SER ALA ASP ASP THR ILE GLU THR SEQRES 28 A 377 VAL ASN PHE ASP HIS VAL LEU GLN HIS GLY ARG LEU THR SEQRES 29 A 377 LEU GLY PHE ALA TYR GLU LEU ALA PHE ALA ASP SER LEU HET NAG B 1 14 HET NAG B 2 14 HET ZN A 401 1 HET ZN A 402 1 HET CL A 403 1 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET EDO A 411 4 HET EDO A 412 4 HET EDO A 413 4 HET EDO A 414 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 CL CL 1- FORMUL 6 SO4 7(O4 S 2-) FORMUL 13 EDO 4(C2 H6 O2) FORMUL 17 HOH *462(H2 O) HELIX 1 AA1 HIS A 86 LYS A 95 1 10 HELIX 2 AA2 ASP A 98 PHE A 112 1 15 HELIX 3 AA3 SER A 119 GLY A 141 1 23 HELIX 4 AA4 ASP A 196 LEU A 211 1 16 HELIX 5 AA5 ASP A 213 ALA A 218 1 6 HELIX 6 AA6 GLY A 232 GLY A 236 5 5 HELIX 7 AA7 LEU A 237 LYS A 250 1 14 HELIX 8 AA8 THR A 266 ALA A 272 1 7 HELIX 9 AA9 ASP A 286 CYS A 301 1 16 HELIX 10 AB1 ASP A 316 TYR A 323 1 8 HELIX 11 AB2 ALA A 334 ASP A 338 5 5 HELIX 12 AB3 THR A 348 VAL A 352 5 5 HELIX 13 AB4 ASN A 353 PHE A 373 1 21 SHEET 1 AA1 8 THR A 146 PHE A 150 0 SHEET 2 AA1 8 SER A 158 ILE A 163 -1 O ILE A 160 N GLU A 148 SHEET 3 AA1 8 THR A 224 TYR A 230 -1 O VAL A 225 N ILE A 163 SHEET 4 AA1 8 LYS A 169 HIS A 176 1 N ILE A 171 O GLU A 226 SHEET 5 AA1 8 ASP A 253 GLN A 260 1 O LEU A 258 N GLY A 174 SHEET 6 AA1 8 ALA A 327 PHE A 331 1 O ALA A 328 N GLN A 259 SHEET 7 AA1 8 ILE A 278 ILE A 281 -1 N GLY A 279 O PHE A 331 SHEET 8 AA1 8 THR A 305 SER A 308 1 O VAL A 306 N ILE A 280 SSBOND 1 CYS A 310 CYS A 314 1555 1555 2.07 LINK ND2 ASN A 87 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK NE2 HIS A 176 ZN ZN A 401 1555 1555 2.25 LINK OD1 ASP A 195 ZN ZN A 401 1555 1555 1.98 LINK OD2 ASP A 195 ZN ZN A 402 1555 1555 2.03 LINK OE2 GLU A 234 ZN ZN A 402 1555 1555 2.04 LINK OD1 ASP A 261 ZN ZN A 401 1555 1555 2.25 LINK OD2 ASP A 261 ZN ZN A 401 1555 1555 2.27 LINK NE2 HIS A 343 ZN ZN A 402 1555 1555 2.20 LINK ZN ZN A 401 O HOH A 660 1555 1555 2.24 LINK ZN ZN A 401 O HOH A 699 1555 1555 2.68 LINK ZN ZN A 402 O HOH A 660 1555 1555 2.19 CISPEP 1 ASP A 195 ASP A 196 0 -1.35 CRYST1 153.920 153.920 88.640 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006497 0.003751 0.000000 0.00000 SCALE2 0.000000 0.007502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011282 0.00000