HEADER SUGAR BINDING PROTEIN 17-JUN-20 6ZFC TITLE FUCOSE-BINDING LECTIN FROM BURKHOLDERIA AMBIFARIA (BAMBL) IN COMPLEX TITLE 2 WITH A FUCOSYL DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIAL LECTIN FROM BURKHOLDERIA AMBIFARIA; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA (STRAIN ATCC BAA-244 / SOURCE 3 AMMD); SOURCE 4 ORGANISM_TAXID: 339670; SOURCE 5 GENE: BAMB_5415; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FUCOSE-BINDING LECTIN, GLYCOMIMETICS, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KUHAUDOMLARP,E.GILLON,M.FRAGAI,L.CEROFOLINI,S.GIUNTINI,M.DENIS, AUTHOR 2 S.SANTARSIA,C.VALORI,A.DONDONI,S.FALLARINI,G.LOMBARDI,C.NATIVI, AUTHOR 3 A.IMBERTY REVDAT 3 24-JAN-24 6ZFC 1 REMARK REVDAT 2 23-JUN-21 6ZFC 1 JRNL REVDAT 1 28-OCT-20 6ZFC 0 JRNL AUTH S.KUHAUDOMLARP,L.CEROFOLINI,S.SANTARSIA,E.GILLON, JRNL AUTH 2 S.FALLARINI,G.LOMBARDI,M.DENIS,S.GIUNTINI,C.VALORI,M.FRAGAI, JRNL AUTH 3 A.IMBERTY,A.DONDONI,C.NATIVI JRNL TITL FUCOSYLATED UBIQUITIN AND ORTHOGONALLY GLYCOSYLATED MUTANT JRNL TITL 2 A28C: CONCEPTUALLY NEW LIGANDS FOR BURKHOLDERIA AMBIFARIA JRNL TITL 3 LECTIN (BAMBL). JRNL REF CHEM SCI V. 11 12662 2020 JRNL REFN ISSN 2041-6520 JRNL PMID 34094460 JRNL DOI 10.1039/D0SC03741A REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 68772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4890 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 295 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 262 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.113 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4429 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3559 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6100 ; 1.687 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8229 ; 1.495 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 532 ; 8.152 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;33.770 ;21.349 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;11.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ; 8.986 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5090 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1066 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292107260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72307 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZW0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM TRISODIUM CITRATE, 100 MM REMARK 280 SODIUM ACETATE PH 5.0 AND 24% PEG 8000, 1% DMSO, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.18012 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.58150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.53279 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.18012 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.58150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 57.53279 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 23 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 -93.56 -133.01 REMARK 500 ASP A 77 47.27 -148.11 REMARK 500 ASP A 77 29.85 -144.21 REMARK 500 SER B 32 -96.63 -127.09 REMARK 500 ASP B 77 47.67 -155.81 REMARK 500 SER C 32 -106.16 -117.91 REMARK 500 SER C 32 -99.84 -117.91 REMARK 500 ASP C 77 63.06 -151.14 REMARK 500 SER D 32 -102.98 -122.31 REMARK 500 SER E 32 -91.63 -123.73 REMARK 500 ASP E 77 72.69 -163.02 REMARK 500 SER F 32 -101.28 -138.05 REMARK 500 ASP F 77 63.80 -151.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QJB B 101 REMARK 610 QJB B 102 REMARK 610 QJB C 101 REMARK 610 QJB C 102 REMARK 610 QJB D 102 REMARK 610 QJB E 102 REMARK 610 QJB F 101 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QJB F 102 DBREF 6ZFC A 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 DBREF 6ZFC B 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 DBREF 6ZFC C 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 DBREF 6ZFC D 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 DBREF 6ZFC E 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 DBREF 6ZFC F 1 87 UNP Q0B4G1 Q0B4G1_BURCM 1 87 SEQRES 1 A 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 A 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 A 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 A 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 A 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 A 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 A 87 TRP THR ARG GLY ALA TYR THR GLY LEU SEQRES 1 B 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 B 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 B 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 B 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 B 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 B 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 B 87 TRP THR ARG GLY ALA TYR THR GLY LEU SEQRES 1 C 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 C 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 C 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 C 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 C 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 C 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 C 87 TRP THR ARG GLY ALA TYR THR GLY LEU SEQRES 1 D 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 D 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 D 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 D 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 D 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 D 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 D 87 TRP THR ARG GLY ALA TYR THR GLY LEU SEQRES 1 E 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 E 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 E 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 E 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 E 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 E 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 E 87 TRP THR ARG GLY ALA TYR THR GLY LEU SEQRES 1 F 87 MET GLN THR ALA ALA ILE SER TRP GLY THR THR PRO SER SEQRES 2 F 87 ILE ARG VAL TYR THR ALA ASN GLY ASN LYS ILE THR GLU SEQRES 3 F 87 ARG CYS TYR ASP GLY SER ASN TRP TYR THR GLY ALA PHE SEQRES 4 F 87 ASN GLN ALA GLY ASP ASN VAL SER ALA THR CYS TRP LEU SEQRES 5 F 87 SER GLY SER ALA VAL HIS ILE ARG VAL TYR ALA THR SER SEQRES 6 F 87 GLY GLY SER THR THR GLU TRP CYS TRP ASP GLY ASP GLY SEQRES 7 F 87 TRP THR ARG GLY ALA TYR THR GLY LEU HET QJB A 101 25 HET QJB A 102 25 HET QJB B 101 23 HET QJB B 102 18 HET QJB C 101 21 HET QJB C 102 18 HET QJB D 101 25 HET QJB D 102 18 HET QJB E 101 25 HET QJB E 102 21 HET QJB F 101 18 HET QJB F 102 25 HETNAM QJB 2-[(2~{S},3~{S},4~{R},4~{A}~{S},10~{A}~{S})-2-METHYL-3, HETNAM 2 QJB 4-BIS(OXIDANYL)-3,4,4~{A},10~{A}-TETRAHYDRO-2~{H}- HETNAM 3 QJB PYRANO[2,3-B][1,4]BENZOXATHIIN-7-YL]-~{N}-(3- HETNAM 4 QJB OXIDANYLPROPYL)ETHANAMIDE FORMUL 7 QJB 12(C17 H23 N O6 S) FORMUL 19 HOH *429(H2 O) SHEET 1 AA1 4 GLN A 2 TRP A 8 0 SHEET 2 AA1 4 SER A 13 ASN A 20 -1 O ALA A 19 N GLN A 2 SHEET 3 AA1 4 LYS A 23 TYR A 29 -1 O ARG A 27 N VAL A 16 SHEET 4 AA1 4 TRP A 34 ALA A 42 -1 O TYR A 35 N CYS A 28 SHEET 1 AA2 4 ASN A 45 SER A 53 0 SHEET 2 AA2 4 ALA A 56 SER A 65 -1 O TYR A 62 N SER A 47 SHEET 3 AA2 4 SER A 68 TRP A 74 -1 O THR A 70 N ALA A 63 SHEET 4 AA2 4 TRP A 79 ARG A 81 -1 O THR A 80 N CYS A 73 SHEET 1 AA3 4 GLN B 2 TRP B 8 0 SHEET 2 AA3 4 SER B 13 ASN B 20 -1 O ALA B 19 N GLN B 2 SHEET 3 AA3 4 LYS B 23 TYR B 29 -1 O LYS B 23 N ASN B 20 SHEET 4 AA3 4 TYR B 35 ALA B 42 -1 O GLN B 41 N ILE B 24 SHEET 1 AA4 4 ASN B 45 SER B 53 0 SHEET 2 AA4 4 ALA B 56 SER B 65 -1 O ARG B 60 N THR B 49 SHEET 3 AA4 4 SER B 68 TRP B 74 -1 O THR B 70 N ALA B 63 SHEET 4 AA4 4 TRP B 79 ARG B 81 -1 O THR B 80 N CYS B 73 SHEET 1 AA5 4 GLN C 2 TRP C 8 0 SHEET 2 AA5 4 SER C 13 ASN C 20 -1 O ALA C 19 N GLN C 2 SHEET 3 AA5 4 LYS C 23 TYR C 29 -1 O ARG C 27 N VAL C 16 SHEET 4 AA5 4 TYR C 35 ALA C 42 -1 O TYR C 35 N CYS C 28 SHEET 1 AA6 4 ASN C 45 SER C 53 0 SHEET 2 AA6 4 ALA C 56 SER C 65 -1 O ARG C 60 N THR C 49 SHEET 3 AA6 4 SER C 68 TRP C 74 -1 O THR C 70 N ALA C 63 SHEET 4 AA6 4 TRP C 79 ARG C 81 -1 O THR C 80 N CYS C 73 SHEET 1 AA7 4 GLN D 2 TRP D 8 0 SHEET 2 AA7 4 SER D 13 ASN D 20 -1 O ALA D 19 N GLN D 2 SHEET 3 AA7 4 LYS D 23 TYR D 29 -1 O ARG D 27 N VAL D 16 SHEET 4 AA7 4 TRP D 34 ALA D 42 -1 O GLN D 41 N ILE D 24 SHEET 1 AA8 4 ASN D 45 SER D 53 0 SHEET 2 AA8 4 ALA D 56 SER D 65 -1 O THR D 64 N ASN D 45 SHEET 3 AA8 4 SER D 68 TRP D 74 -1 O THR D 70 N ALA D 63 SHEET 4 AA8 4 TRP D 79 ARG D 81 -1 O THR D 80 N CYS D 73 SHEET 1 AA9 4 GLN E 2 TRP E 8 0 SHEET 2 AA9 4 SER E 13 ASN E 20 -1 O ALA E 19 N GLN E 2 SHEET 3 AA9 4 LYS E 23 TYR E 29 -1 O ARG E 27 N VAL E 16 SHEET 4 AA9 4 TRP E 34 THR E 36 -1 O TYR E 35 N CYS E 28 SHEET 1 AB1 4 GLN E 2 TRP E 8 0 SHEET 2 AB1 4 SER E 13 ASN E 20 -1 O ALA E 19 N GLN E 2 SHEET 3 AB1 4 LYS E 23 TYR E 29 -1 O ARG E 27 N VAL E 16 SHEET 4 AB1 4 GLN E 41 ALA E 42 -1 O GLN E 41 N ILE E 24 SHEET 1 AB2 4 ASN E 45 SER E 53 0 SHEET 2 AB2 4 ALA E 56 SER E 65 -1 O TYR E 62 N SER E 47 SHEET 3 AB2 4 SER E 68 TRP E 74 -1 O THR E 70 N ALA E 63 SHEET 4 AB2 4 TRP E 79 ARG E 81 -1 O THR E 80 N CYS E 73 SHEET 1 AB3 4 GLN F 2 TRP F 8 0 SHEET 2 AB3 4 SER F 13 ASN F 20 -1 O ALA F 19 N GLN F 2 SHEET 3 AB3 4 LYS F 23 TYR F 29 -1 O ARG F 27 N VAL F 16 SHEET 4 AB3 4 TYR F 35 ALA F 42 -1 O TYR F 35 N CYS F 28 SHEET 1 AB4 4 ASN F 45 SER F 53 0 SHEET 2 AB4 4 ALA F 56 SER F 65 -1 O ARG F 60 N THR F 49 SHEET 3 AB4 4 SER F 68 TRP F 74 -1 O THR F 70 N ALA F 63 SHEET 4 AB4 4 TRP F 79 ARG F 81 -1 O THR F 80 N CYS F 73 CISPEP 1 THR A 11 PRO A 12 0 -3.32 CISPEP 2 THR B 11 PRO B 12 0 -4.11 CISPEP 3 THR C 11 PRO C 12 0 -3.91 CISPEP 4 THR D 11 PRO D 12 0 -4.21 CISPEP 5 THR E 11 PRO E 12 0 -7.70 CISPEP 6 THR F 11 PRO F 12 0 -1.77 SITE 1 AC1 12 ARG A 15 GLU A 26 TYR A 35 GLY A 37 SITE 2 AC1 12 ALA A 38 TRP A 74 ASP A 77 GLY A 78 SITE 3 AC1 12 TRP A 79 TYR D 35 THR D 36 QJB D 101 SITE 1 AC2 10 ARG A 60 GLU A 71 ALA A 83 HOH A 201 SITE 2 AC2 10 TYR B 29 TRP B 34 GLY B 76 ASP B 77 SITE 3 AC2 10 QJB B 101 HOH B 227 SITE 1 AC3 12 ARG A 81 QJB A 102 HOH A 263 ARG B 15 SITE 2 AC3 12 GLU B 26 TYR B 35 GLY B 37 ALA B 38 SITE 3 AC3 12 TRP B 74 TRP B 79 HOH B 227 HOH B 242 SITE 1 AC4 6 ARG B 60 GLU B 71 GLY B 82 ALA B 83 SITE 2 AC4 6 TYR C 29 TRP C 34 SITE 1 AC5 10 ARG C 15 GLU C 26 TYR C 35 GLY C 37 SITE 2 AC5 10 ALA C 38 TRP C 74 TRP C 79 TYR E 35 SITE 3 AC5 10 THR E 36 QJB E 101 SITE 1 AC6 6 TYR A 29 TRP A 34 ARG C 60 GLU C 71 SITE 2 AC6 6 GLY C 82 ALA C 83 SITE 1 AC7 12 TYR A 35 THR A 36 ALA A 38 QJB A 101 SITE 2 AC7 12 ARG D 15 GLU D 26 TYR D 35 GLY D 37 SITE 3 AC7 12 ALA D 38 TRP D 74 TRP D 79 HOH D 258 SITE 1 AC8 7 ARG D 60 GLU D 71 GLY D 82 ALA D 83 SITE 2 AC8 7 ILE E 14 TYR E 29 TRP E 34 SITE 1 AC9 12 THR C 36 GLY C 37 ALA C 38 QJB C 101 SITE 2 AC9 12 ARG E 15 GLU E 26 TYR E 35 GLY E 37 SITE 3 AC9 12 ALA E 38 TRP E 74 TRP E 79 LEU E 87 SITE 1 AD1 7 ARG E 60 GLU E 71 ALA E 83 TYR F 29 SITE 2 AD1 7 TRP F 34 ASP F 77 QJB F 102 SITE 1 AD2 7 ILE D 14 TYR D 29 TRP D 34 ARG F 60 SITE 2 AD2 7 GLU F 71 GLY F 82 ALA F 83 SITE 1 AD3 10 ARG E 81 QJB E 102 ARG F 15 GLU F 26 SITE 2 AD3 10 TYR F 35 GLY F 37 ALA F 38 TRP F 74 SITE 3 AD3 10 TRP F 79 HOH F 228 CRYST1 109.092 49.163 115.098 90.00 91.36 90.00 I 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009167 0.000000 0.000218 0.00000 SCALE2 0.000000 0.020341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008691 0.00000