HEADER PROTEIN TRANSPORT 18-JUN-20 6ZFW TITLE X-RAY STRUCTURE OF THE SOLUBLE N-TERMINAL DOMAIN OF T. CRUZI PEX-14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIN-14; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: C3747_80G13; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS CHAGAS DISEASE, TRYPANOSOMA CRUZI, GLYCOSOMAL IMPORT, PEROXISOMES, KEYWDS 2 PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SOFTLEY,M.O.OSTERTAG,M.SATTLER,G.P.POPOWICZ REVDAT 3 24-JAN-24 6ZFW 1 REMARK REVDAT 2 30-DEC-20 6ZFW 1 JRNL REVDAT 1 09-DEC-20 6ZFW 0 JRNL AUTH J.ZAUCHA,C.A.SOFTLEY,M.SATTLER,D.FRISHMAN,G.M.POPOWICZ JRNL TITL DEEP LEARNING MODEL PREDICTS WATER INTERACTION SITES ON THE JRNL TITL 2 SURFACE OF PROTEINS USING LIMITED-RESOLUTION DATA. JRNL REF CHEM.COMMUN.(CAMB.) V. 56 15454 2020 JRNL REFN ESSN 1364-548X JRNL PMID 33237041 JRNL DOI 10.1039/D0CC04383D REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 53441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4400 - 4.2200 0.98 2689 166 0.1500 0.1692 REMARK 3 2 4.2100 - 3.3500 0.97 2666 147 0.1387 0.1860 REMARK 3 3 3.3500 - 2.9200 0.99 2679 139 0.1598 0.1987 REMARK 3 4 2.9200 - 2.6600 0.98 2690 128 0.1643 0.1885 REMARK 3 5 2.6600 - 2.4700 0.99 2670 143 0.1761 0.2039 REMARK 3 6 2.4700 - 2.3200 0.99 2708 147 0.1758 0.2222 REMARK 3 7 2.3200 - 2.2000 0.99 2662 155 0.1705 0.2309 REMARK 3 8 2.2000 - 2.1100 0.98 2648 137 0.1768 0.2056 REMARK 3 9 2.1100 - 2.0300 0.98 2712 133 0.1782 0.2024 REMARK 3 10 2.0300 - 1.9600 0.99 2674 139 0.1901 0.2270 REMARK 3 11 1.9600 - 1.9000 0.99 2667 145 0.1919 0.2555 REMARK 3 12 1.9000 - 1.8400 0.99 2699 149 0.2079 0.2470 REMARK 3 13 1.8400 - 1.7900 0.99 2673 136 0.2162 0.2403 REMARK 3 14 1.7900 - 1.7500 0.94 2624 108 0.2303 0.2902 REMARK 3 15 1.7500 - 1.7100 0.97 2601 124 0.2352 0.2718 REMARK 3 16 1.7100 - 1.6700 0.98 2686 144 0.2325 0.2819 REMARK 3 17 1.6700 - 1.6400 0.98 2686 133 0.2518 0.2815 REMARK 3 18 1.6400 - 1.6100 0.98 2656 142 0.2643 0.3188 REMARK 3 19 1.6100 - 1.5800 0.99 2695 141 0.2856 0.3185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.189 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.788 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2986 REMARK 3 ANGLE : 1.202 4027 REMARK 3 CHIRALITY : 0.070 450 REMARK 3 PLANARITY : 0.008 515 REMARK 3 DIHEDRAL : 5.951 429 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID -1 THROUGH 2 OR REMARK 3 RESID 4 OR RESID 9 OR RESID 11 OR RESID REMARK 3 13 THROUGH 15 OR RESID 17 THROUGH 18 OR REMARK 3 RESID 20 THROUGH 21 OR RESID 23 OR RESID REMARK 3 26 THROUGH 29 OR RESID 32 THROUGH 41 OR REMARK 3 RESID 43 THROUGH 45 OR RESID 47 THROUGH REMARK 3 49 OR (RESID 50 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 52 THROUGH 61 OR (RESID 63 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 64)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID -1 THROUGH 2 OR REMARK 3 RESID 4 OR RESID 9 OR RESID 11 OR RESID REMARK 3 13 THROUGH 15 OR RESID 17 THROUGH 18 OR REMARK 3 RESID 20 THROUGH 21 OR RESID 23 OR RESID REMARK 3 26 THROUGH 29 OR RESID 32 THROUGH 41 OR REMARK 3 RESID 43 THROUGH 45 OR RESID 47 THROUGH REMARK 3 49 OR (RESID 50 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 52 THROUGH 61 OR (RESID 63 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 64)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID -1 THROUGH 2 OR REMARK 3 RESID 4 OR RESID 9 OR RESID 11 OR RESID REMARK 3 13 THROUGH 15 OR RESID 17 THROUGH 18 OR REMARK 3 RESID 20 THROUGH 21 OR RESID 23 OR RESID REMARK 3 26 THROUGH 29 OR RESID 32 THROUGH 41 OR REMARK 3 RESID 43 THROUGH 45 OR RESID 47 THROUGH REMARK 3 49 OR (RESID 50 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 52 THROUGH 61 OR (RESID 63 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 64)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID -1 THROUGH 2 OR REMARK 3 RESID 4 OR RESID 9 OR RESID 11 OR RESID REMARK 3 13 THROUGH 15 OR RESID 17 THROUGH 18 OR REMARK 3 RESID 20 THROUGH 21 OR RESID 23 OR RESID REMARK 3 26 THROUGH 29 OR RESID 32 THROUGH 41 OR REMARK 3 RESID 43 THROUGH 45 OR RESID 47 THROUGH REMARK 3 49 OR (RESID 50 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 52 THROUGH 61 OR (RESID 63 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 64)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID -1 THROUGH 2 OR REMARK 3 RESID 4 OR RESID 9 OR RESID 11 OR RESID REMARK 3 13 THROUGH 15 OR RESID 17 THROUGH 18 OR REMARK 3 RESID 20 THROUGH 21 OR RESID 23 OR RESID REMARK 3 26 THROUGH 29 OR RESID 32 THROUGH 41 OR REMARK 3 RESID 43 THROUGH 45 OR RESID 47 THROUGH REMARK 3 49 OR (RESID 50 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 52 THROUGH 61 OR (RESID 63 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 64)) REMARK 3 SELECTION : (CHAIN 'D' AND (RESID -1 THROUGH 2 OR REMARK 3 RESID 4 OR RESID 9 OR RESID 11 OR RESID REMARK 3 13 THROUGH 15 OR RESID 17 THROUGH 18 OR REMARK 3 RESID 20 THROUGH 21 OR RESID 23 OR RESID REMARK 3 26 THROUGH 29 OR RESID 32 THROUGH 41 OR REMARK 3 RESID 43 THROUGH 45 OR RESID 47 THROUGH REMARK 3 49 OR (RESID 50 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 52 THROUGH 61 OR (RESID 63 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 64)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID -1 THROUGH 2 OR REMARK 3 RESID 4 OR RESID 9 OR RESID 11 OR RESID REMARK 3 13 THROUGH 15 OR RESID 17 THROUGH 18 OR REMARK 3 RESID 20 THROUGH 21 OR RESID 23 OR RESID REMARK 3 26 THROUGH 29 OR RESID 32 THROUGH 41 OR REMARK 3 RESID 43 THROUGH 45 OR RESID 47 THROUGH REMARK 3 49 OR (RESID 50 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 52 THROUGH 61 OR (RESID 63 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 64)) REMARK 3 SELECTION : (CHAIN 'E' AND (RESID -1 THROUGH 2 OR REMARK 3 RESID 4 OR RESID 9 OR RESID 11 OR RESID REMARK 3 13 THROUGH 15 OR RESID 17 THROUGH 18 OR REMARK 3 RESID 20 THROUGH 21 OR RESID 23 OR RESID REMARK 3 26 THROUGH 29 OR RESID 32 THROUGH 41 OR REMARK 3 RESID 43 THROUGH 45 OR RESID 47 THROUGH REMARK 3 50 OR RESID 52 THROUGH 61 OR RESID 63 REMARK 3 THROUGH 64)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.82656 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 48.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 1.730 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5L87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA ACETATE, 0.1 M TRIS.HCL PH REMARK 280 8.5, 30%(W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.69100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -3 REMARK 465 ASN C 66 REMARK 465 GLY D -3 REMARK 465 GLY E -3 REMARK 465 ALA E -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU E 50 CG CD OE1 OE2 REMARK 470 LYS E 63 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 16 O HOH C 201 1.85 REMARK 500 O HOH A 249 O HOH A 258 1.85 REMARK 500 NZ LYS D 9 O HOH D 201 1.86 REMARK 500 OD1 ASN A 30 O HOH A 201 1.87 REMARK 500 O HOH D 203 O HOH D 235 1.95 REMARK 500 N GLY C -3 O HOH C 202 2.09 REMARK 500 N GLY C -3 O HOH C 203 2.10 REMARK 500 O HOH D 201 O HOH D 203 2.12 REMARK 500 OG SER A 12 O HOH A 202 2.14 REMARK 500 ND2 ASN A 66 O HOH A 203 2.15 REMARK 500 O HOH A 216 O HOH A 268 2.15 REMARK 500 OE1 GLU E 4 O HOH E 401 2.15 REMARK 500 OD1 ASP E 59 O HOH E 402 2.16 REMARK 500 O GLN E 54 O HOH E 403 2.16 REMARK 500 ND2 ASN A 30 O HOH A 204 2.17 REMARK 500 O HOH C 219 O HOH C 262 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 257 O HOH C 259 2447 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 63 CA - CB - CG ANGL. DEV. = -16.0 DEGREES REMARK 500 GLN C 33 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO E 57 69.15 -68.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BME C 101 and CYS C REMARK 800 46 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BME D 101 and CYS D REMARK 800 46 DBREF1 6ZFW A 2 66 UNP A0A2V2WKZ5_TRYCR DBREF2 6ZFW A A0A2V2WKZ5 21 85 DBREF1 6ZFW B 2 66 UNP A0A2V2WKZ5_TRYCR DBREF2 6ZFW B A0A2V2WKZ5 21 85 DBREF1 6ZFW C 2 66 UNP A0A2V2WKZ5_TRYCR DBREF2 6ZFW C A0A2V2WKZ5 21 85 DBREF1 6ZFW D 2 66 UNP A0A2V2WKZ5_TRYCR DBREF2 6ZFW D A0A2V2WKZ5 21 85 DBREF1 6ZFW E 2 66 UNP A0A2V2WKZ5_TRYCR DBREF2 6ZFW E A0A2V2WKZ5 21 85 SEQADV 6ZFW GLY A -3 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA A -2 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW MET A -1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA A 0 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW TRP A 1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW GLY B -3 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA B -2 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW MET B -1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA B 0 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW TRP B 1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW GLY C -3 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA C -2 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW MET C -1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA C 0 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW TRP C 1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW GLY D -3 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA D -2 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW MET D -1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA D 0 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW TRP D 1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW GLY E -3 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA E -2 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW MET E -1 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW ALA E 0 UNP A0A2V2WKZ EXPRESSION TAG SEQADV 6ZFW TRP E 1 UNP A0A2V2WKZ EXPRESSION TAG SEQRES 1 A 70 GLY ALA MET ALA TRP PRO GLU GLU SER GLU LYS ARG LYS SEQRES 2 A 70 ARG VAL SER SER ALA VAL GLN PHE LEU HIS ASP SER ARG SEQRES 3 A 70 VAL LYS ILE THR PRO ALA ALA ASN LYS ILE GLN PHE LEU SEQRES 4 A 70 LYS SER LYS GLY LEU THR THR GLU GLU VAL CYS GLU ALA SEQRES 5 A 70 PHE GLU LYS ALA GLY GLN THR ILE PRO LEU ASP GLU ILE SEQRES 6 A 70 LYS LYS ILE MET ASN SEQRES 1 B 70 GLY ALA MET ALA TRP PRO GLU GLU SER GLU LYS ARG LYS SEQRES 2 B 70 ARG VAL SER SER ALA VAL GLN PHE LEU HIS ASP SER ARG SEQRES 3 B 70 VAL LYS ILE THR PRO ALA ALA ASN LYS ILE GLN PHE LEU SEQRES 4 B 70 LYS SER LYS GLY LEU THR THR GLU GLU VAL CYS GLU ALA SEQRES 5 B 70 PHE GLU LYS ALA GLY GLN THR ILE PRO LEU ASP GLU ILE SEQRES 6 B 70 LYS LYS ILE MET ASN SEQRES 1 C 70 GLY ALA MET ALA TRP PRO GLU GLU SER GLU LYS ARG LYS SEQRES 2 C 70 ARG VAL SER SER ALA VAL GLN PHE LEU HIS ASP SER ARG SEQRES 3 C 70 VAL LYS ILE THR PRO ALA ALA ASN LYS ILE GLN PHE LEU SEQRES 4 C 70 LYS SER LYS GLY LEU THR THR GLU GLU VAL CYS GLU ALA SEQRES 5 C 70 PHE GLU LYS ALA GLY GLN THR ILE PRO LEU ASP GLU ILE SEQRES 6 C 70 LYS LYS ILE MET ASN SEQRES 1 D 70 GLY ALA MET ALA TRP PRO GLU GLU SER GLU LYS ARG LYS SEQRES 2 D 70 ARG VAL SER SER ALA VAL GLN PHE LEU HIS ASP SER ARG SEQRES 3 D 70 VAL LYS ILE THR PRO ALA ALA ASN LYS ILE GLN PHE LEU SEQRES 4 D 70 LYS SER LYS GLY LEU THR THR GLU GLU VAL CYS GLU ALA SEQRES 5 D 70 PHE GLU LYS ALA GLY GLN THR ILE PRO LEU ASP GLU ILE SEQRES 6 D 70 LYS LYS ILE MET ASN SEQRES 1 E 70 GLY ALA MET ALA TRP PRO GLU GLU SER GLU LYS ARG LYS SEQRES 2 E 70 ARG VAL SER SER ALA VAL GLN PHE LEU HIS ASP SER ARG SEQRES 3 E 70 VAL LYS ILE THR PRO ALA ALA ASN LYS ILE GLN PHE LEU SEQRES 4 E 70 LYS SER LYS GLY LEU THR THR GLU GLU VAL CYS GLU ALA SEQRES 5 E 70 PHE GLU LYS ALA GLY GLN THR ILE PRO LEU ASP GLU ILE SEQRES 6 E 70 LYS LYS ILE MET ASN HET BME A 101 4 HET GOL A 102 6 HET BME C 101 4 HET GOL C 102 6 HET GOL C 103 14 HET BME D 101 4 HET GOL E 301 6 HET ACT E 302 7 HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 BME 3(C2 H6 O S) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 13 ACT C2 H3 O2 1- FORMUL 14 HOH *325(H2 O) HELIX 1 AA1 ALA A 0 ASP A 20 1 21 HELIX 2 AA2 ASP A 20 ILE A 25 1 6 HELIX 3 AA3 PRO A 27 LYS A 38 1 12 HELIX 4 AA4 THR A 41 ALA A 52 1 12 HELIX 5 AA5 PRO A 57 ASN A 66 1 10 HELIX 6 AA6 ALA B 0 ASP B 20 1 21 HELIX 7 AA7 ASP B 20 ILE B 25 1 6 HELIX 8 AA8 PRO B 27 LYS B 38 1 12 HELIX 9 AA9 THR B 41 ALA B 52 1 12 HELIX 10 AB1 PRO B 57 MET B 65 1 9 HELIX 11 AB2 ALA C 0 ASP C 20 1 21 HELIX 12 AB3 ASP C 20 ILE C 25 1 6 HELIX 13 AB4 PRO C 27 LYS C 38 1 12 HELIX 14 AB5 THR C 41 ALA C 52 1 12 HELIX 15 AB6 PRO C 57 MET C 65 1 9 HELIX 16 AB7 ALA D 0 ASP D 20 1 21 HELIX 17 AB8 ASP D 20 ILE D 25 1 6 HELIX 18 AB9 PRO D 27 LYS D 38 1 12 HELIX 19 AC1 THR D 41 ALA D 52 1 12 HELIX 20 AC2 PRO D 57 ASN D 66 1 10 HELIX 21 AC3 ALA E 0 ASP E 20 1 21 HELIX 22 AC4 ASP E 20 ILE E 25 1 6 HELIX 23 AC5 PRO E 27 LYS E 38 1 12 HELIX 24 AC6 THR E 41 ALA E 52 1 12 HELIX 25 AC7 PRO E 57 ASN E 66 1 10 LINK SG CYS A 46 S2 BME A 101 1555 1555 2.00 LINK SG CYS C 46 S2 BME C 101 1555 1555 2.02 LINK SG CYS D 46 S2 BME D 101 1555 1555 2.01 SITE 1 AC1 4 GLU A 43 CYS A 46 GLU A 50 GLN D 33 SITE 1 AC2 5 ALA A 0 TRP A 1 SER B 13 GLN B 16 SITE 2 AC2 5 LYS B 63 SITE 1 AC3 4 HIS C 19 SER C 21 LYS C 24 HOH C 212 SITE 1 AC4 5 LYS C 7 ARG C 8 GLU C 47 LYS C 51 SITE 2 AC4 5 HOH C 208 SITE 1 AC5 5 ASN D 30 GLN D 33 PHE D 34 SER E 5 SITE 2 AC5 5 ARG E 8 SITE 1 AC6 5 VAL D 23 PRO E 2 SER E 5 GLU E 6 SITE 2 AC6 5 HOH E 440 SITE 1 AC7 10 THR C 42 GLU C 43 GLU C 44 VAL C 45 SITE 2 AC7 10 GLU C 47 ALA C 48 PHE C 49 GLU C 50 SITE 3 AC7 10 ILE C 61 HOH C 242 SITE 1 AC8 12 GLN B 33 MET B 65 THR D 42 GLU D 43 SITE 2 AC8 12 GLU D 44 VAL D 45 GLU D 47 ALA D 48 SITE 3 AC8 12 PHE D 49 GLU D 50 ILE D 61 HOH D 230 CRYST1 35.688 117.382 51.301 90.00 109.24 90.00 P 1 21 1 10 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028021 0.000000 0.009777 0.00000 SCALE2 0.000000 0.008519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020645 0.00000