HEADER HYDROLASE 19-JUN-20 6ZGM TITLE CRYSTAL STRUCTURE OF THE VIM-2 ACQUIRED METALLO-BETA-LACTAMASE IN TITLE 2 COMPLEX WITH THE THIAZOLECARBOXYLATE INHIBITOR ANT2681 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE VIM-2-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METALLO-BETA-LACTAMASE, TRIAZOLE-THIONE INHIBITOR, ANTIBIOTIC KEYWDS 2 RESISTANCE, CARBAPENEM-HYDROLYZING BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.DOCQUIER,C.POZZI,F.MARCOCCIA,F.DE LUCA,M.BENVENUTI,S.MANGANI REVDAT 3 24-JAN-24 6ZGM 1 REMARK REVDAT 2 23-SEP-20 6ZGM 1 JRNL REVDAT 1 02-SEP-20 6ZGM 0 JRNL AUTH D.T.DAVIES,S.LEIRIS,N.SPRYNSKI,J.CASTANDET,C.LOZANO, JRNL AUTH 2 J.BOUSQUET,M.ZALACAIN,S.VASA,P.K.DASARI,R.PATTIPATI, JRNL AUTH 3 N.VEMPALA,S.GUJJEWAR,S.GODI,R.JALLALA,R.R.SATHYAP, JRNL AUTH 4 N.A.DARSHANOJU,V.R.RAVU,R.R.JUVENTHALA,N.POTTABATHINI, JRNL AUTH 5 S.SHARMA,S.POTHUKANURI,K.HOLDEN,P.WARN,F.MARCOCCIA, JRNL AUTH 6 M.BENVENUTI,C.POZZI,S.MANGANI,J.D.DOCQUIER,M.LEMONNIER, JRNL AUTH 7 M.EVERETT JRNL TITL ANT2681: SAR STUDIES LEADING TO THE IDENTIFICATION OF A JRNL TITL 2 METALLO-BETA-LACTAMASE INHIBITOR WITH POTENTIAL FOR CLINICAL JRNL TITL 3 USE IN COMBINATION WITH MEROPENEM FOR THE TREATMENT OF JRNL TITL 4 INFECTIONS CAUSED BY NDM-PRODUCINGENTEROBACTERIACEAE. JRNL REF ACS INFECT DIS. V. 6 2419 2020 JRNL REFN ESSN 2373-8227 JRNL PMID 32786279 JRNL DOI 10.1021/ACSINFECDIS.0C00207 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1749 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1853 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1658 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2541 ; 1.774 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3839 ; 1.458 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.664 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;30.446 ;22.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 266 ;13.786 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.854 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2147 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 390 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY VIM-2 RESIDUES REMARK 3 NUMBERED ACCORDING TO THE BBL STANDARD NUMBERING SCH GALLENI ET REMARK 3 AL., HTTPS://DOI.ORG/10.1128/AAC.45.3.660-663.2001 TERMINAL REMARK 3 MOIETY OF INHIBITOR ANT2681 POSSIBLY DISORDERED. RESIDUE VAL39 REMARK 3 OMITTED. REMARK 4 REMARK 4 6ZGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25911 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 55.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CACODYLATE, 0.2 M NA-ACETATE, 5 REMARK 280 MM DTT, 26% PEG8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.98000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.08900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.82950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.98000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.08900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.82950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.98000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.08900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.82950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.98000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 39.08900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.82950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 39 CA CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 150.51 72.53 REMARK 500 TRP A 87 69.61 73.24 REMARK 500 ALA A 195 -107.00 -153.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 98.8 REMARK 620 3 HIS A 196 NE2 102.2 112.7 REMARK 620 4 HOH A 535 O 109.8 115.9 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 96.5 REMARK 620 3 HIS A 263 NE2 90.3 102.3 REMARK 620 4 QKK A 406 O4 168.9 91.6 95.4 REMARK 620 5 QKK A 406 N5 89.9 166.3 89.7 80.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HIS A 285 ND1 45.8 REMARK 620 3 ACT A 404 O 90.7 88.1 REMARK 620 4 ACT A 404 OXT 124.5 89.3 50.4 REMARK 620 5 ACT A 405 OXT 111.1 94.9 152.2 102.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QKK A 406 DBREF 6ZGM A 25 300 UNP B8QIQ9 B8QIQ9_PSEAI 27 266 SEQRES 1 A 240 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 2 A 240 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 3 A 240 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 4 A 240 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 5 A 240 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 6 A 240 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 7 A 240 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 8 A 240 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 9 A 240 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 10 A 240 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 11 A 240 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 12 A 240 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 13 A 240 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 14 A 240 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 15 A 240 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 16 A 240 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 17 A 240 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 18 A 240 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 19 A 240 ASN ARG SER VAL VAL GLU HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ACT A 404 4 HET ACT A 405 4 HET QKK A 406 28 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM QKK 5-[[4-(CARBAMIMIDAMIDOCARBAMOYLAMINO)-3,5- HETNAM 2 QKK BIS(FLUORANYL)PHENYL]SULFONYLAMINO]-1,3-THIAZOLE-4- HETNAM 3 QKK CARBOXYLIC ACID FORMUL 2 ZN 3(ZN 2+) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 QKK C12 H11 F2 N7 O5 S2 FORMUL 8 HOH *171(H2 O) HELIX 1 AA1 THR A 33 ILE A 37 5 5 HELIX 2 AA2 GLY A 88 ILE A 104 1 16 HELIX 3 AA3 HIS A 118 GLY A 123 1 6 HELIX 4 AA4 GLY A 124 ALA A 131 1 8 HELIX 5 AA5 SER A 139 GLY A 150 1 12 HELIX 6 AA6 CYS A 221 ILE A 223 5 3 HELIX 7 AA7 GLU A 241 TYR A 253 1 13 HELIX 8 AA8 LEU A 280 ASN A 295 1 16 SHEET 1 AA1 7 ARG A 43 ALA A 49 0 SHEET 2 AA1 7 VAL A 52 PHE A 61 -1 O SER A 54 N TYR A 45 SHEET 3 AA1 7 ALA A 64 ASP A 76 -1 O ILE A 73 N TRP A 53 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 109 VAL A 113 1 O ARG A 111 N LEU A 82 SHEET 6 AA1 7 ALA A 135 ALA A 138 1 O TYR A 137 N ALA A 112 SHEET 7 AA1 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 AA2 5 ASP A 180 PHE A 184 0 SHEET 2 AA2 5 VAL A 187 TYR A 191 -1 O LEU A 189 N VAL A 182 SHEET 3 AA2 5 VAL A 202 TYR A 204 -1 O TYR A 204 N GLU A 188 SHEET 4 AA2 5 VAL A 216 GLY A 220 -1 O TYR A 218 N VAL A 203 SHEET 5 AA2 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.08 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 1.94 LINK OD2 ASP A 120 ZN ZN A 402 1555 1555 2.15 LINK NE2 HIS A 170 ZN ZN A 403 1555 1555 2.04 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.02 LINK SG CYS A 221 ZN ZN A 402 1555 1555 2.30 LINK NE2 HIS A 263 ZN ZN A 402 1555 1555 2.20 LINK ND1 HIS A 285 ZN ZN A 403 1555 6444 2.07 LINK ZN ZN A 401 O HOH A 535 1555 1555 1.91 LINK ZN ZN A 402 O4 QKK A 406 1555 1555 2.16 LINK ZN ZN A 402 N5 QKK A 406 1555 1555 2.11 LINK ZN ZN A 403 O ACT A 404 1555 1555 2.70 LINK ZN ZN A 403 OXT ACT A 404 1555 1555 2.22 LINK ZN ZN A 403 OXT ACT A 405 1555 1555 2.16 SITE 1 AC1 4 HIS A 116 HIS A 118 HIS A 196 HOH A 535 SITE 1 AC2 5 ASP A 120 CYS A 221 HIS A 263 QKK A 406 SITE 2 AC2 5 HOH A 535 SITE 1 AC3 4 HIS A 170 HIS A 285 ACT A 404 ACT A 405 SITE 1 AC4 8 ALA A 135 HIS A 170 HIS A 285 ASN A 288 SITE 2 AC4 8 ZN A 403 ACT A 405 HOH A 508 HOH A 661 SITE 1 AC5 8 ARG A 129 ALA A 135 THR A 169 HIS A 170 SITE 2 AC5 8 HIS A 285 ZN A 403 ACT A 404 HOH A 543 SITE 1 AC6 14 PHE A 61 ASP A 120 HIS A 196 CYS A 221 SITE 2 AC6 14 ARG A 228 GLY A 232 ASN A 233 VAL A 234 SITE 3 AC6 14 ALA A 235 HIS A 263 ZN A 402 HOH A 535 SITE 4 AC6 14 HOH A 548 HOH A 578 CRYST1 67.960 78.178 79.659 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014715 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012554 0.00000