HEADER TRANSFERASE 23-JUN-20 6ZHK TITLE CRYSTAL STRUCTURE OF ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE TITLE 2 AMINOTRANSFERASE FROM METHANOCALDOCOCCUS JANNASCHII DSM 2661 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 7,8-DIAMINO-PELARGONIC ACID AMINOTRANSFERASE,DAPA COMPND 5 AMINOTRANSFERASE,8-DIAMINONONANOATE SYNTHASE,DANS,DIAMINOPELARGONIC COMPND 6 ACID SYNTHASE; COMPND 7 EC: 2.6.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 GENE: BIOA, MJ1300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSAMINASE, PLP, DATA, ARCHEA, THERMOSTABLE, KEYWDS 2 AMINOTRANSFERASE, METHANOCALDOCOCCUS JANNASCHII EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,T.N.NIKOLAEVA,T.N.STEKHANOVA,T.V.RAKITINA,E.Y.BEZSUDNOVA, AUTHOR 2 V.O.POPOV REVDAT 4 24-JAN-24 6ZHK 1 REMARK REVDAT 3 19-JAN-22 6ZHK 1 JRNL LINK REVDAT 2 08-JUL-20 6ZHK 1 SEQADV REVDAT 1 01-JUL-20 6ZHK 0 JRNL AUTH K.M.BOYKO,A.Y.NIKOLAEVA,A.K.BAKUNOVA,T.N.STEKHANOVA, JRNL AUTH 2 T.V.RAKITINA,V.O.POPOV,E.Y.BEZSUDNOVA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THERMOSTABLE D-AMINO ACID JRNL TITL 2 TRANSAMINASE FROM THE ARCHAEON METHANOCALDOCOCCUS JANNASCHII JRNL TITL 3 DSM 2661 JRNL REF CRYSTALLOGRAPHY REPORTS 2021 JRNL REFN ISSN 1063-7745 JRNL DOI 10.1134/S1063774521050035 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 68050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3545 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6916 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 446 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.36000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 1.64000 REMARK 3 B12 (A**2) : 0.47000 REMARK 3 B13 (A**2) : 1.15000 REMARK 3 B23 (A**2) : 1.03000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.050 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7119 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9588 ; 1.842 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 874 ; 6.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 332 ;36.090 ;23.886 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1306 ;16.055 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 911 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5310 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 9 466 B 9 466 14329 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 60.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3DOD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2; 0.1M TRIS PH 8.5; 19% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 MET A 6 REMARK 465 ASN A 7 REMARK 465 ILE A 8 REMARK 465 CYS A 190 REMARK 465 TYR A 191 REMARK 465 ARG A 192 REMARK 465 CYS A 193 REMARK 465 LYS A 194 REMARK 465 TYR A 195 REMARK 465 HIS A 196 REMARK 465 ASN A 197 REMARK 465 PHE A 198 REMARK 465 LYS A 199 REMARK 465 ASP A 200 REMARK 465 THR A 201 REMARK 465 ASP A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 465 ASN A 205 REMARK 465 GLU A 206 REMARK 465 LYS A 207 REMARK 465 GLY A 208 REMARK 465 CYS A 209 REMARK 465 GLY B 1 REMARK 465 HIS B 2 REMARK 465 MET B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 MET B 6 REMARK 465 ASN B 7 REMARK 465 ILE B 8 REMARK 465 CYS B 190 REMARK 465 TYR B 191 REMARK 465 ARG B 192 REMARK 465 CYS B 193 REMARK 465 LYS B 194 REMARK 465 TYR B 195 REMARK 465 HIS B 196 REMARK 465 ASN B 197 REMARK 465 PHE B 198 REMARK 465 LYS B 199 REMARK 465 ASP B 200 REMARK 465 THR B 201 REMARK 465 ASP B 202 REMARK 465 GLU B 203 REMARK 465 ARG B 204 REMARK 465 ASN B 205 REMARK 465 GLU B 206 REMARK 465 LYS B 207 REMARK 465 GLY B 208 REMARK 465 CYS B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CD CE NZ REMARK 470 LYS A 72 CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 LYS A 380 CE NZ REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 LYS A 406 CG CD CE NZ REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 GLU B 210 CG CD OE1 OE2 REMARK 470 MET B 211 CG SD CE REMARK 470 LYS B 406 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 CYS B 213 CB - CA - C ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 62 49.68 71.76 REMARK 500 SER A 70 45.80 -142.54 REMARK 500 LYS A 84 -64.46 -97.38 REMARK 500 SER A 150 -156.87 -146.38 REMARK 500 GLU A 153 -2.03 76.12 REMARK 500 PHE A 274 41.92 73.91 REMARK 500 LYS A 301 -94.81 46.62 REMARK 500 SER B 70 44.81 -141.05 REMARK 500 LYS B 84 -61.91 -94.90 REMARK 500 ILE B 85 134.85 -172.53 REMARK 500 PRO B 110 150.23 -42.90 REMARK 500 SER B 150 -157.32 -150.24 REMARK 500 PHE B 274 38.17 76.79 REMARK 500 LYS B 301 -92.89 44.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 106 O REMARK 620 2 THR A 109 O 82.3 REMARK 620 3 THR A 109 OG1 78.4 76.8 REMARK 620 4 PRO A 110 O 146.1 66.2 104.9 REMARK 620 5 LEU A 113 O 115.2 161.7 100.6 97.6 REMARK 620 6 HOH A 695 O 79.3 101.8 157.6 94.6 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 106 O REMARK 620 2 THR B 109 O 81.8 REMARK 620 3 THR B 109 OG1 79.2 76.0 REMARK 620 4 PRO B 110 O 144.0 64.5 103.3 REMARK 620 5 LEU B 113 O 118.7 158.2 99.4 96.6 REMARK 620 6 HOH B 716 O 81.0 102.2 160.1 93.3 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 603 O REMARK 620 2 HOH B 620 O 166.6 REMARK 620 3 HOH B 626 O 95.4 86.4 REMARK 620 4 HOH B 665 O 92.4 100.6 97.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 DBREF 6ZHK A 6 466 UNP Q58696 BIOA_METJA 1 461 DBREF 6ZHK B 6 466 UNP Q58696 BIOA_METJA 1 461 SEQADV 6ZHK GLY A 1 UNP Q58696 EXPRESSION TAG SEQADV 6ZHK HIS A 2 UNP Q58696 EXPRESSION TAG SEQADV 6ZHK MET A 3 UNP Q58696 VARIANT SEQADV 6ZHK ASN A 4 UNP Q58696 VARIANT SEQADV 6ZHK LYS A 5 UNP Q58696 VARIANT SEQADV 6ZHK GLY B 1 UNP Q58696 EXPRESSION TAG SEQADV 6ZHK HIS B 2 UNP Q58696 EXPRESSION TAG SEQADV 6ZHK MET B 3 UNP Q58696 VARIANT SEQADV 6ZHK ASN B 4 UNP Q58696 VARIANT SEQADV 6ZHK LYS B 5 UNP Q58696 VARIANT SEQRES 1 A 466 GLY HIS MET ASN LYS MET ASN ILE ASP LYS ASN LEU LEU SEQRES 2 A 466 GLU LYS TRP ASP LYS GLU TYR ILE TRP HIS PRO TYR THR SEQRES 3 A 466 GLN MET LYS GLU TYR ARG GLU SER LYS ASN LEU ILE ILE SEQRES 4 A 466 GLU ARG GLY GLU GLY ASN TYR LEU ILE ASP ILE TYR GLY SEQRES 5 A 466 ASN LYS TYR LEU ASP ALA VAL SER SER ILE TRP CYS ASN SEQRES 6 A 466 LEU PHE GLY HIS SER ARG LYS GLU ILE ILE GLU ALA ILE SEQRES 7 A 466 LYS ASN GLN ALA ASP LYS ILE CYS HIS SER THR LEU LEU SEQRES 8 A 466 GLY CYS GLY ASN VAL PRO SER ILE LEU LEU ALA LYS LYS SEQRES 9 A 466 LEU VAL ASP ILE THR PRO LYS HIS LEU THR LYS VAL PHE SEQRES 10 A 466 TYR SER GLU ASP GLY ALA GLU ALA VAL GLU ILE ALA ILE SEQRES 11 A 466 LYS MET ALA TYR GLN TYR TYR VAL LEU ARG GLY ASP LYS SEQRES 12 A 466 GLY ARG THR LYS PHE ILE SER VAL LYS GLU GLY TYR HIS SEQRES 13 A 466 GLY ASP THR VAL GLY ALA MET SER VAL GLY GLY SER GLU SEQRES 14 A 466 LEU PHE HIS GLY VAL PHE LYS PRO LEU LEU PHE LYS GLY SEQRES 15 A 466 TYR HIS ALA ASN PRO PRO TYR CYS TYR ARG CYS LYS TYR SEQRES 16 A 466 HIS ASN PHE LYS ASP THR ASP GLU ARG ASN GLU LYS GLY SEQRES 17 A 466 CYS GLU MET GLU CYS LEU ASN GLU MET ILE SER LEU ILE SEQRES 18 A 466 GLU LYS HIS ALA GLU GLU VAL PHE CYS VAL ILE LEU GLU SEQRES 19 A 466 GLY GLY ILE MET GLY SER ALA GLY MET ILE PRO TYR PRO SEQRES 20 A 466 ASP GLY TYR ILE GLU GLY VAL ALA LYS ALA CYS LYS GLU SEQRES 21 A 466 ASN ASP VAL ILE PHE ILE LEU ASP GLU VAL ALA THR GLY SEQRES 22 A 466 PHE GLY ARG THR GLY LYS MET PHE PHE CYS ASP ASN GLU SEQRES 23 A 466 GLU LEU LYS LYS LEU GLU LYS PRO ASP ILE LEU CYS LEU SEQRES 24 A 466 GLY LYS GLY LEU THR GLY GLY TYR LEU PRO LEU ALA ALA SEQRES 25 A 466 THR LEU THR THR ASP GLU ILE TYR ASN GLN PHE LEU GLY SEQRES 26 A 466 GLU PHE GLY GLU SER LYS GLN LEU TYR HIS GLY HIS THR SEQRES 27 A 466 TYR THR GLY ASN GLN LEU LEU CYS SER ALA ALA LEU ALA SEQRES 28 A 466 THR LEU GLU ILE PHE GLU LYS GLU ASN VAL ILE GLU ASN SEQRES 29 A 466 ILE GLN PRO LYS ILE LYS LEU PHE HIS LYS GLU LEU ARG SEQRES 30 A 466 LYS LEU LYS GLU LEU GLU HIS VAL GLY ASP VAL ARG GLY SEQRES 31 A 466 ARG GLY PHE MET VAL GLY ILE GLU LEU VAL LYS ASP LYS SEQRES 32 A 466 GLU THR LYS GLU PRO TYR PRO TYR GLY TYR LYS ALA GLY SEQRES 33 A 466 TYR ARG VAL ALA GLU LYS LEU LEU GLU LYS GLY ILE TYR SEQRES 34 A 466 MET ARG PRO ILE GLY ASN VAL ILE ILE LEU VAL PRO PRO SEQRES 35 A 466 LEU SER ILE THR GLU LYS GLU ILE ILE TYR LEU CYS ASP SEQRES 36 A 466 ALA LEU TYR GLU ALA ILE LYS GLU ALA ASP LEU SEQRES 1 B 466 GLY HIS MET ASN LYS MET ASN ILE ASP LYS ASN LEU LEU SEQRES 2 B 466 GLU LYS TRP ASP LYS GLU TYR ILE TRP HIS PRO TYR THR SEQRES 3 B 466 GLN MET LYS GLU TYR ARG GLU SER LYS ASN LEU ILE ILE SEQRES 4 B 466 GLU ARG GLY GLU GLY ASN TYR LEU ILE ASP ILE TYR GLY SEQRES 5 B 466 ASN LYS TYR LEU ASP ALA VAL SER SER ILE TRP CYS ASN SEQRES 6 B 466 LEU PHE GLY HIS SER ARG LYS GLU ILE ILE GLU ALA ILE SEQRES 7 B 466 LYS ASN GLN ALA ASP LYS ILE CYS HIS SER THR LEU LEU SEQRES 8 B 466 GLY CYS GLY ASN VAL PRO SER ILE LEU LEU ALA LYS LYS SEQRES 9 B 466 LEU VAL ASP ILE THR PRO LYS HIS LEU THR LYS VAL PHE SEQRES 10 B 466 TYR SER GLU ASP GLY ALA GLU ALA VAL GLU ILE ALA ILE SEQRES 11 B 466 LYS MET ALA TYR GLN TYR TYR VAL LEU ARG GLY ASP LYS SEQRES 12 B 466 GLY ARG THR LYS PHE ILE SER VAL LYS GLU GLY TYR HIS SEQRES 13 B 466 GLY ASP THR VAL GLY ALA MET SER VAL GLY GLY SER GLU SEQRES 14 B 466 LEU PHE HIS GLY VAL PHE LYS PRO LEU LEU PHE LYS GLY SEQRES 15 B 466 TYR HIS ALA ASN PRO PRO TYR CYS TYR ARG CYS LYS TYR SEQRES 16 B 466 HIS ASN PHE LYS ASP THR ASP GLU ARG ASN GLU LYS GLY SEQRES 17 B 466 CYS GLU MET GLU CYS LEU ASN GLU MET ILE SER LEU ILE SEQRES 18 B 466 GLU LYS HIS ALA GLU GLU VAL PHE CYS VAL ILE LEU GLU SEQRES 19 B 466 GLY GLY ILE MET GLY SER ALA GLY MET ILE PRO TYR PRO SEQRES 20 B 466 ASP GLY TYR ILE GLU GLY VAL ALA LYS ALA CYS LYS GLU SEQRES 21 B 466 ASN ASP VAL ILE PHE ILE LEU ASP GLU VAL ALA THR GLY SEQRES 22 B 466 PHE GLY ARG THR GLY LYS MET PHE PHE CYS ASP ASN GLU SEQRES 23 B 466 GLU LEU LYS LYS LEU GLU LYS PRO ASP ILE LEU CYS LEU SEQRES 24 B 466 GLY LYS GLY LEU THR GLY GLY TYR LEU PRO LEU ALA ALA SEQRES 25 B 466 THR LEU THR THR ASP GLU ILE TYR ASN GLN PHE LEU GLY SEQRES 26 B 466 GLU PHE GLY GLU SER LYS GLN LEU TYR HIS GLY HIS THR SEQRES 27 B 466 TYR THR GLY ASN GLN LEU LEU CYS SER ALA ALA LEU ALA SEQRES 28 B 466 THR LEU GLU ILE PHE GLU LYS GLU ASN VAL ILE GLU ASN SEQRES 29 B 466 ILE GLN PRO LYS ILE LYS LEU PHE HIS LYS GLU LEU ARG SEQRES 30 B 466 LYS LEU LYS GLU LEU GLU HIS VAL GLY ASP VAL ARG GLY SEQRES 31 B 466 ARG GLY PHE MET VAL GLY ILE GLU LEU VAL LYS ASP LYS SEQRES 32 B 466 GLU THR LYS GLU PRO TYR PRO TYR GLY TYR LYS ALA GLY SEQRES 33 B 466 TYR ARG VAL ALA GLU LYS LEU LEU GLU LYS GLY ILE TYR SEQRES 34 B 466 MET ARG PRO ILE GLY ASN VAL ILE ILE LEU VAL PRO PRO SEQRES 35 B 466 LEU SER ILE THR GLU LYS GLU ILE ILE TYR LEU CYS ASP SEQRES 36 B 466 ALA LEU TYR GLU ALA ILE LYS GLU ALA ASP LEU HET MG A 501 1 HET MG B 501 1 HET MG B 502 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *446(H2 O) HELIX 1 AA1 ASP A 9 ILE A 21 1 13 HELIX 2 AA2 GLN A 27 SER A 34 1 8 HELIX 3 AA3 VAL A 59 CYS A 64 1 6 HELIX 4 AA4 ARG A 71 ASP A 83 1 13 HELIX 5 AA5 VAL A 96 THR A 109 1 14 HELIX 6 AA6 ASP A 121 GLY A 141 1 21 HELIX 7 AA7 THR A 159 GLY A 166 1 8 HELIX 8 AA8 SER A 168 GLY A 173 1 6 HELIX 9 AA9 VAL A 174 LEU A 179 5 6 HELIX 10 AB1 MET A 211 ALA A 225 1 15 HELIX 11 AB2 GLY A 249 ASP A 262 1 14 HELIX 12 AB3 ASN A 285 GLU A 292 1 8 HELIX 13 AB4 GLY A 300 GLY A 305 5 6 HELIX 14 AB5 THR A 316 GLN A 322 1 7 HELIX 15 AB6 GLU A 326 SER A 330 5 5 HELIX 16 AB7 ASN A 342 GLU A 359 1 18 HELIX 17 AB8 ASN A 360 ILE A 365 1 6 HELIX 18 AB9 ILE A 365 ARG A 377 1 13 HELIX 19 AC1 LYS A 378 LEU A 382 5 5 HELIX 20 AC2 PRO A 410 TYR A 413 5 4 HELIX 21 AC3 LYS A 414 LYS A 426 1 13 HELIX 22 AC4 THR A 446 ALA A 464 1 19 HELIX 23 AC5 LYS B 10 ILE B 21 1 12 HELIX 24 AC6 GLN B 27 SER B 34 1 8 HELIX 25 AC7 VAL B 59 CYS B 64 1 6 HELIX 26 AC8 ARG B 71 ASP B 83 1 13 HELIX 27 AC9 VAL B 96 THR B 109 1 14 HELIX 28 AD1 ASP B 121 GLY B 141 1 21 HELIX 29 AD2 THR B 159 GLY B 166 1 8 HELIX 30 AD3 SER B 168 GLY B 173 1 6 HELIX 31 AD4 VAL B 174 LEU B 179 5 6 HELIX 32 AD5 MET B 211 ALA B 225 1 15 HELIX 33 AD6 GLY B 249 ASN B 261 1 13 HELIX 34 AD7 ASN B 285 GLU B 292 1 8 HELIX 35 AD8 GLY B 300 GLY B 305 5 6 HELIX 36 AD9 THR B 316 GLN B 322 1 7 HELIX 37 AE1 GLU B 326 SER B 330 5 5 HELIX 38 AE2 ASN B 342 GLU B 359 1 18 HELIX 39 AE3 ASN B 360 ILE B 365 1 6 HELIX 40 AE4 ILE B 365 ARG B 377 1 13 HELIX 41 AE5 LYS B 378 LEU B 382 5 5 HELIX 42 AE6 PRO B 410 TYR B 413 5 4 HELIX 43 AE7 LYS B 414 LYS B 426 1 13 HELIX 44 AE8 THR B 446 ALA B 464 1 19 SHEET 1 AA1 5 ILE A 428 TYR A 429 0 SHEET 2 AA1 5 LYS A 54 ASP A 57 1 N LEU A 56 O TYR A 429 SHEET 3 AA1 5 TYR A 46 ASP A 49 -1 N LEU A 47 O TYR A 55 SHEET 4 AA1 5 ILE A 38 GLU A 43 -1 N ARG A 41 O ILE A 48 SHEET 5 AA1 5 GLY B 94 ASN B 95 1 O GLY B 94 N ILE A 39 SHEET 1 AA2 5 GLY A 94 ASN A 95 0 SHEET 2 AA2 5 ILE B 38 GLU B 43 1 O ILE B 39 N GLY A 94 SHEET 3 AA2 5 TYR B 46 ASP B 49 -1 O ILE B 48 N ARG B 41 SHEET 4 AA2 5 LYS B 54 ASP B 57 -1 O TYR B 55 N LEU B 47 SHEET 5 AA2 5 ILE B 428 TYR B 429 1 O TYR B 429 N LEU B 56 SHEET 1 AA3 7 LYS A 115 SER A 119 0 SHEET 2 AA3 7 ALA A 311 THR A 315 -1 O ALA A 311 N SER A 119 SHEET 3 AA3 7 ILE A 296 LEU A 299 -1 N LEU A 297 O LEU A 314 SHEET 4 AA3 7 PHE A 265 ASP A 268 1 N LEU A 267 O ILE A 296 SHEET 5 AA3 7 VAL A 228 GLU A 234 1 N VAL A 231 O ILE A 266 SHEET 6 AA3 7 LYS A 147 VAL A 151 1 N LYS A 147 O PHE A 229 SHEET 7 AA3 7 TYR A 183 ALA A 185 1 O ALA A 185 N SER A 150 SHEET 1 AA4 2 ILE A 237 MET A 238 0 SHEET 2 AA4 2 ILE A 244 PRO A 245 -1 O ILE A 244 N MET A 238 SHEET 1 AA5 3 VAL A 385 ARG A 391 0 SHEET 2 AA5 3 MET A 394 LEU A 399 -1 O GLU A 398 N GLY A 386 SHEET 3 AA5 3 VAL A 436 LEU A 439 -1 O ILE A 437 N ILE A 397 SHEET 1 AA6 7 LYS B 115 SER B 119 0 SHEET 2 AA6 7 ALA B 311 THR B 315 -1 O ALA B 311 N SER B 119 SHEET 3 AA6 7 ILE B 296 LEU B 299 -1 N LEU B 297 O LEU B 314 SHEET 4 AA6 7 PHE B 265 ASP B 268 1 N LEU B 267 O CYS B 298 SHEET 5 AA6 7 VAL B 228 GLU B 234 1 N LEU B 233 O ASP B 268 SHEET 6 AA6 7 LYS B 147 VAL B 151 1 N LYS B 147 O PHE B 229 SHEET 7 AA6 7 TYR B 183 ALA B 185 1 O ALA B 185 N SER B 150 SHEET 1 AA7 2 ILE B 237 MET B 238 0 SHEET 2 AA7 2 ILE B 244 PRO B 245 -1 O ILE B 244 N MET B 238 SHEET 1 AA8 3 VAL B 385 ARG B 391 0 SHEET 2 AA8 3 MET B 394 LEU B 399 -1 O GLY B 396 N ARG B 389 SHEET 3 AA8 3 VAL B 436 LEU B 439 -1 O ILE B 437 N ILE B 397 LINK O VAL A 106 MG MG A 501 1555 1555 2.21 LINK O THR A 109 MG MG A 501 1555 1555 2.69 LINK OG1 THR A 109 MG MG A 501 1555 1555 2.58 LINK O PRO A 110 MG MG A 501 1555 1555 2.21 LINK O LEU A 113 MG MG A 501 1555 1555 2.20 LINK MG MG A 501 O HOH A 695 1555 1555 2.12 LINK O VAL B 106 MG MG B 501 1555 1555 2.18 LINK O THR B 109 MG MG B 501 1555 1555 2.76 LINK OG1 THR B 109 MG MG B 501 1555 1555 2.54 LINK O PRO B 110 MG MG B 501 1555 1555 2.23 LINK O LEU B 113 MG MG B 501 1555 1555 2.20 LINK MG MG B 501 O HOH B 716 1555 1555 2.16 LINK MG MG B 502 O HOH B 603 1555 1545 2.17 LINK MG MG B 502 O HOH B 620 1555 1555 2.09 LINK MG MG B 502 O HOH B 626 1555 1555 2.07 LINK MG MG B 502 O HOH B 665 1555 1555 2.11 CISPEP 1 LYS A 293 PRO A 294 0 1.83 CISPEP 2 LYS B 293 PRO B 294 0 4.02 SITE 1 AC1 5 VAL A 106 THR A 109 PRO A 110 LEU A 113 SITE 2 AC1 5 HOH A 695 SITE 1 AC2 5 VAL B 106 THR B 109 PRO B 110 LEU B 113 SITE 2 AC2 5 HOH B 716 SITE 1 AC3 4 HOH B 603 HOH B 620 HOH B 626 HOH B 665 CRYST1 61.232 61.380 63.069 106.11 93.48 96.47 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016331 0.001852 0.001591 0.00000 SCALE2 0.000000 0.016396 0.004906 0.00000 SCALE3 0.000000 0.000000 0.016581 0.00000