HEADER RNA BINDING PROTEIN 23-JUN-20 6ZHM TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS RSGA BOUND TO GDP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: V(-5) AS LABELLED HERE SHOULD BE TAKEN AS V1, AS THIS COMPND 7 IS THE TRUE INITIATING CODON IN THIS INSTANCE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN USA300); SOURCE 3 ORGANISM_TAXID: 367830; SOURCE 4 GENE: RSGA, SAUSA300_1114; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS GTPASE, GDP-BINDING, TRAFAC, RIBOSOME ASSEMBLY, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.J.BENNISON,J.B.RAFFERTY,R.M.CORRIGAN REVDAT 3 24-JAN-24 6ZHM 1 REMARK REVDAT 2 03-AUG-22 6ZHM 1 JRNL REVDAT 1 30-JUN-21 6ZHM 0 JRNL AUTH D.J.BENNISON,J.A.NAKAMOTO,T.D.CRAGGS,P.MILON,J.B.RAFFERTY, JRNL AUTH 2 R.M.CORRIGAN JRNL TITL THE STRINGENT RESPONSE INHIBITS 70S RIBOSOME FORMATION IN JRNL TITL 2 STAPHYLOCOCCUS AUREUS BY IMPEDING GTPASE-RIBOSOME JRNL TITL 3 INTERACTIONS. JRNL REF MBIO V. 12 67921 2021 JRNL REFN ESSN 2150-7511 JRNL PMID 34749534 JRNL DOI 10.1128/MBIO.02679-21 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2179 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 6ZHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 101.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.25900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 2.12800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZHL REMARK 200 REMARK 200 REMARK: CLUSTER OF ROD-SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, 20% W/V PEG 3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.12000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.12000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASN A 182 REMARK 465 LEU A 183 REMARK 465 GLU A 184 REMARK 465 THR A 185 REMARK 465 ASN A 186 REMARK 465 ASP A 187 REMARK 465 ILE A 188 REMARK 465 SER A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 LEU A 192 REMARK 465 ASN A 193 REMARK 465 ARG A 194 REMARK 465 GLY A 195 REMARK 465 LYS A 196 REMARK 465 HIS A 197 REMARK 465 THR A 198 REMARK 465 THR A 199 REMARK 465 ARG A 200 REMARK 465 VAL A 289 REMARK 465 ARG A 290 REMARK 465 TYR A 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 10 CG1 CG2 CD1 REMARK 470 SER A 11 OG REMARK 470 GLN A 58 CG CD OE1 NE2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 HIS A 201 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 219 OG REMARK 470 LEU A 221 CG CD1 CD2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 36 17.00 -140.89 REMARK 500 ILE A 51 -53.58 75.93 REMARK 500 GLN A 104 31.59 70.56 REMARK 500 ASP A 214 -37.56 -25.42 REMARK 500 SER A 219 -23.90 164.47 REMARK 500 ALA A 220 -159.62 -88.76 REMARK 500 LEU A 221 57.38 -67.19 REMARK 500 ILE A 253 -78.26 -113.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 506 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A 507 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH A 508 DISTANCE = 9.11 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 9.35 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 9.69 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 13.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 245 SG REMARK 620 2 CYS A 250 SG 113.0 REMARK 620 3 HIS A 252 ND1 93.1 105.3 REMARK 620 4 CYS A 258 SG 114.1 114.9 114.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZHL RELATED DB: PDB REMARK 900 6ZHL CONTAINS THE SAME PROTEIN (RSGA) BOUND TO PPGPP REMARK 900 RELATED ID: 6ZJO RELATED DB: PDB REMARK 900 6ZJO CONTAINS THE SAME PROTEIN IN THE APO STATE DBREF1 6ZHM A 8 291 UNP A0A0H2XJQ2_STAA3 DBREF2 6ZHM A A0A0H2XJQ2 2 285 SEQADV 6ZHM MET A -19 UNP A0A0H2XJQ INITIATING METHIONINE SEQADV 6ZHM GLY A -18 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM SER A -17 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM SER A -16 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM HIS A -15 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM HIS A -14 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM HIS A -13 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM HIS A -12 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM HIS A -11 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM HIS A -10 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM SER A -9 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM SER A -8 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM GLY A -7 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM LEU A -6 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM VAL A -5 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM PRO A -4 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM ARG A -3 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM GLY A -2 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM SER A -1 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM HIS A 0 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM MET A 1 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM LYS A 2 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM THR A 3 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM GLY A 4 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM ARG A 5 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM ILE A 6 UNP A0A0H2XJQ EXPRESSION TAG SEQADV 6ZHM VAL A 7 UNP A0A0H2XJQ EXPRESSION TAG SEQRES 1 A 311 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 311 LEU VAL PRO ARG GLY SER HIS MET LYS THR GLY ARG ILE SEQRES 3 A 311 VAL LYS SER ILE SER GLY VAL TYR GLN VAL ASP VAL ASN SEQRES 4 A 311 GLY GLU ARG PHE ASN THR LYS PRO ARG GLY LEU PHE ARG SEQRES 5 A 311 LYS LYS LYS PHE SER PRO VAL VAL GLY ASP ILE VAL GLU SEQRES 6 A 311 PHE GLU VAL GLN ASN ILE ASN GLU GLY TYR ILE HIS GLN SEQRES 7 A 311 VAL PHE GLU ARG GLU ASN GLU LEU LYS ARG PRO PRO VAL SEQRES 8 A 311 SER ASN ILE ASP THR LEU VAL ILE VAL MET SER ALA VAL SEQRES 9 A 311 GLU PRO ASN PHE SER THR GLN LEU LEU ASP ARG PHE LEU SEQRES 10 A 311 VAL ILE ALA HIS SER TYR GLN LEU ASN ALA ARG ILE LEU SEQRES 11 A 311 VAL THR LYS LYS ASP LYS THR PRO ILE GLU LYS GLN PHE SEQRES 12 A 311 GLU ILE ASN GLU LEU LEU LYS ILE TYR GLU ASN ILE GLY SEQRES 13 A 311 TYR GLU THR GLU PHE ILE GLY ASN ASP ASP ASP ARG LYS SEQRES 14 A 311 LYS ILE VAL GLU ALA TRP PRO ALA GLY LEU ILE VAL LEU SEQRES 15 A 311 SER GLY GLN SER GLY VAL GLY LYS SER THR PHE LEU ASN SEQRES 16 A 311 HIS TYR ARG PRO GLU LEU ASN LEU GLU THR ASN ASP ILE SEQRES 17 A 311 SER LYS SER LEU ASN ARG GLY LYS HIS THR THR ARG HIS SEQRES 18 A 311 VAL GLU LEU PHE GLU ARG GLN ASN GLY TYR ILE ALA ASP SEQRES 19 A 311 THR PRO GLY PHE SER ALA LEU ASP PHE ASP HIS ILE ASP SEQRES 20 A 311 LYS ASP GLU ILE LYS ASP TYR PHE LEU GLU LEU ASN ARG SEQRES 21 A 311 TYR GLY GLU THR CYS LYS PHE ARG ASN CYS ASN HIS ILE SEQRES 22 A 311 LYS GLU PRO ASN CYS ASN VAL LYS HIS GLN LEU GLU ILE SEQRES 23 A 311 GLY ASN ILE ALA GLN PHE ARG TYR ASP HIS TYR LEU GLN SEQRES 24 A 311 LEU PHE ASN GLU ILE SER ASN ARG LYS VAL ARG TYR HET GDP A 301 28 HET ZN A 302 1 HET PGE A 303 10 HET EDO A 304 4 HET EDO A 305 4 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 ZN ZN 2+ FORMUL 4 PGE C6 H14 O4 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *111(H2 O) HELIX 1 AA1 GLY A 29 SER A 37 5 9 HELIX 2 AA2 SER A 89 TYR A 103 1 15 HELIX 3 AA3 LYS A 113 THR A 117 5 5 HELIX 4 AA4 PRO A 118 GLY A 136 1 19 HELIX 5 AA5 ASP A 147 ALA A 154 1 8 HELIX 6 AA6 LYS A 170 ASN A 175 1 6 HELIX 7 AA7 HIS A 176 ARG A 178 5 3 HELIX 8 AA8 GLU A 230 TYR A 234 5 5 HELIX 9 AA9 PHE A 235 GLY A 242 1 8 HELIX 10 AB1 GLU A 243 CYS A 245 5 3 HELIX 11 AB2 CYS A 258 ILE A 266 1 9 HELIX 12 AB3 ALA A 270 ASN A 286 1 17 SHEET 1 AA1 6 LYS A 2 ILE A 10 0 SHEET 2 AA1 6 VAL A 13 VAL A 18 -1 O ASP A 17 N ARG A 5 SHEET 3 AA1 6 GLU A 21 PRO A 27 -1 O THR A 25 N TYR A 14 SHEET 4 AA1 6 GLU A 53 VAL A 59 1 O ILE A 56 N LYS A 26 SHEET 5 AA1 6 ILE A 43 GLN A 49 -1 N GLU A 45 O GLN A 58 SHEET 6 AA1 6 LYS A 2 ILE A 10 -1 N GLY A 4 O VAL A 44 SHEET 1 AA2 2 GLU A 65 LEU A 66 0 SHEET 2 AA2 2 VAL A 71 SER A 72 -1 O VAL A 71 N LEU A 66 SHEET 1 AA3 6 THR A 139 PHE A 141 0 SHEET 2 AA3 6 ALA A 107 THR A 112 1 N VAL A 111 O GLU A 140 SHEET 3 AA3 6 THR A 76 SER A 82 1 N ILE A 79 O LEU A 110 SHEET 4 AA3 6 GLY A 158 SER A 163 1 O VAL A 161 N VAL A 78 SHEET 5 AA3 6 GLY A 210 ALA A 213 1 O TYR A 211 N GLY A 158 SHEET 6 AA3 6 LEU A 204 ARG A 207 -1 N PHE A 205 O ILE A 212 LINK SG CYS A 245 ZN ZN A 302 1555 1555 2.31 LINK SG CYS A 250 ZN ZN A 302 1555 1555 2.55 LINK ND1 HIS A 252 ZN ZN A 302 1555 1555 2.16 LINK SG CYS A 258 ZN ZN A 302 1555 1555 2.22 CISPEP 1 ARG A 68 PRO A 69 0 -15.82 CISPEP 2 GLU A 85 PRO A 86 0 -5.13 SITE 1 AC1 19 LYS A 26 ARG A 28 ARG A 32 LYS A 113 SITE 2 AC1 19 ASP A 115 LYS A 116 GLY A 143 ASN A 144 SITE 3 AC1 19 ARG A 148 GLN A 165 SER A 166 GLY A 167 SITE 4 AC1 19 VAL A 168 GLY A 169 LYS A 170 SER A 171 SITE 5 AC1 19 THR A 172 HOH A 447 HOH A 452 SITE 1 AC2 4 CYS A 245 CYS A 250 HIS A 252 CYS A 258 SITE 1 AC3 3 LYS A 35 PHE A 36 VAL A 59 SITE 1 AC4 4 LYS A 228 THR A 244 ASN A 257 HOH A 451 SITE 1 AC5 1 SER A 102 CRYST1 50.240 66.970 113.360 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019904 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008821 0.00000