HEADER MEMBRANE PROTEIN 23-JUN-20 6ZHO TITLE CRYSTAL STRUCTURE OF A CGRP RECEPTOR ECTODOMAIN HETERODIMER WITH BOUND TITLE 2 HIGH AFFINITY INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE/MALTODEXTRIN-BINDING PERIPLASMIC PROTEIN,RECEPTOR COMPND 3 ACTIVITY-MODIFYING PROTEIN 1,CALCITONIN GENE-RELATED PEPTIDE TYPE 1 COMPND 4 RECEPTOR; COMPND 5 CHAIN: A; COMPND 6 SYNONYM: MMBP,MALTODEXTRIN-BINDING PROTEIN,MALTOSE-BINDING PROTEIN, COMPND 7 MBP,CALCITONIN-RECEPTOR-LIKE RECEPTOR ACTIVITY-MODIFYING PROTEIN 1, COMPND 8 CRLR ACTIVITY-MODIFYING PROTEIN 1,CGRP TYPE 1 RECEPTOR,CALCITONIN COMPND 9 RECEPTOR-LIKE RECEPTOR; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 83333, 9606; SOURCE 5 STRAIN: K12; SOURCE 6 GENE: MALE, B4034, JW3994, RAMP1, CALCRL, CGRPR; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: HEK GNTI KEYWDS GPCR, CGRP, CLR, RAMP1, ECD, MEMBRANE PROTEIN, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.SOUTHALL REVDAT 7 24-JAN-24 6ZHO 1 REMARK REVDAT 6 25-AUG-21 6ZHO 1 REMARK DBREF REVDAT 5 18-AUG-21 6ZHO 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 SEQADV SEQRES HELIX SHEET REVDAT 5 3 1 SSBOND ATOM REVDAT 4 05-AUG-20 6ZHO 1 JRNL HETSYN REVDAT 3 29-JUL-20 6ZHO 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 22-JUL-20 6ZHO 1 JRNL REVDAT 1 15-JUL-20 6ZHO 0 JRNL AUTH S.J.BUCKNELL,M.A.ATOR,A.J.H.BROWN,J.BROWN,A.D.CANSFIELD, JRNL AUTH 2 J.E.CANSFIELD,J.A.CHRISTOPHER,M.CONGREVE,G.CSEKE, JRNL AUTH 3 F.DEFLORIAN,C.R.JONES,J.S.MASON,M.A.O'BRIEN,G.R.OTT, JRNL AUTH 4 M.PICKWORTH,S.M.SOUTHALL JRNL TITL STRUCTURE-BASED DRUG DISCOVERY JRNL TITL 2 OFN-((R)-3-(7-METHYL-1H-INDAZOL-5-YL)-1-OXO-1-(((S) JRNL TITL 3 -1-OXO-3-(PIPERIDIN-4-YL)-1-(4-(PYRIDIN-4-YL)PIPERAZIN-1-YL) JRNL TITL 4 PROPAN-2-YL)AMINO)PROPAN-2-YL)-2'-OXO-1', JRNL TITL 5 2'-DIHYDROSPIRO[PIPERIDINE-4,4'-PYRIDO[2,3-D][1, JRNL TITL 6 3]OXAZINE]-1-CARBOXAMIDE (HTL22562): A CALCITONIN JRNL TITL 7 GENE-RELATED PEPTIDE RECEPTOR ANTAGONIST FOR ACUTE TREATMENT JRNL TITL 8 OF MIGRAINE. JRNL REF J.MED.CHEM. V. 63 7906 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32558564 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01003 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.090 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 136426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 6883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4800 - 4.9700 1.00 4349 217 0.1653 0.2101 REMARK 3 2 4.9700 - 3.9400 1.00 4348 211 0.1324 0.1595 REMARK 3 3 3.9400 - 3.4500 1.00 4344 213 0.1395 0.1755 REMARK 3 4 3.4500 - 3.1300 1.00 4327 258 0.1484 0.1834 REMARK 3 5 3.1300 - 2.9100 1.00 4320 246 0.1614 0.1941 REMARK 3 6 2.9100 - 2.7400 1.00 4357 209 0.1652 0.2077 REMARK 3 7 2.7400 - 2.6000 1.00 4340 228 0.1574 0.1889 REMARK 3 8 2.6000 - 2.4900 1.00 4332 208 0.1619 0.1823 REMARK 3 9 2.4900 - 2.3900 1.00 4292 236 0.1624 0.1863 REMARK 3 10 2.3900 - 2.3100 1.00 4327 258 0.1606 0.2338 REMARK 3 11 2.3100 - 2.2400 1.00 4302 235 0.1633 0.1970 REMARK 3 12 2.2400 - 2.1700 1.00 4335 235 0.1681 0.2175 REMARK 3 13 2.1700 - 2.1100 1.00 4342 228 0.1694 0.2174 REMARK 3 14 2.1100 - 2.0600 1.00 4289 236 0.1717 0.1968 REMARK 3 15 2.0600 - 2.0200 1.00 4318 222 0.1806 0.1955 REMARK 3 16 2.0200 - 1.9700 1.00 4355 220 0.1865 0.2376 REMARK 3 17 1.9700 - 1.9300 1.00 4252 269 0.1912 0.2017 REMARK 3 18 1.9300 - 1.9000 1.00 4340 251 0.1981 0.2276 REMARK 3 19 1.9000 - 1.8600 0.99 4308 239 0.2094 0.2655 REMARK 3 20 1.8600 - 1.8300 0.99 4303 203 0.2196 0.2505 REMARK 3 21 1.8300 - 1.8000 0.99 4333 229 0.2264 0.2544 REMARK 3 22 1.8000 - 1.7700 0.99 4285 238 0.2385 0.2417 REMARK 3 23 1.7700 - 1.7500 1.00 4218 241 0.2428 0.2874 REMARK 3 24 1.7500 - 1.7200 0.99 4306 272 0.2562 0.3108 REMARK 3 25 1.7200 - 1.7000 0.99 4240 257 0.2693 0.3026 REMARK 3 26 1.7000 - 1.6800 0.99 4351 208 0.2737 0.3281 REMARK 3 27 1.6800 - 1.6600 0.99 4332 198 0.2741 0.3233 REMARK 3 28 1.6600 - 1.6400 1.00 4336 203 0.2947 0.3020 REMARK 3 29 1.6400 - 1.6200 0.98 4281 216 0.3015 0.3251 REMARK 3 30 1.6200 - 1.6000 0.99 4381 199 0.3039 0.3417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.196 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4898 REMARK 3 ANGLE : 1.463 6673 REMARK 3 CHIRALITY : 0.072 706 REMARK 3 PLANARITY : 0.010 858 REMARK 3 DIHEDRAL : 17.969 706 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.0464 -1.9281 -12.6995 REMARK 3 T TENSOR REMARK 3 T11: 0.0400 T22: 0.0506 REMARK 3 T33: 0.0569 T12: -0.0012 REMARK 3 T13: 0.0082 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0707 L22: 0.1295 REMARK 3 L33: 0.2760 L12: -0.0914 REMARK 3 L13: -0.0461 L23: 0.1335 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.0025 S13: 0.0302 REMARK 3 S21: -0.0058 S22: -0.0059 S23: -0.0145 REMARK 3 S31: 0.0050 S32: -0.0154 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 136426 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 38.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RWG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 0.1 M AMMONIUM REMARK 280 ACETATE, 15 % PEG 10,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.86250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.51400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.48050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.51400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.86250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.48050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 ALA A 1110 REMARK 465 VAL A 1111 REMARK 465 GLY A 2020 REMARK 465 SER A 2021 REMARK 465 ALA A 2022 REMARK 465 GLY A 2023 REMARK 465 SER A 2024 REMARK 465 ALA A 2025 REMARK 465 GLY A 2026 REMARK 465 SER A 2027 REMARK 465 ALA A 2028 REMARK 465 GLU A 2029 REMARK 465 ASP A 2030 REMARK 465 SER A 2031 REMARK 465 ILE A 2032 REMARK 465 GLN A 2033 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 129 O HOH A 2301 1.87 REMARK 500 NZ LYS A 297 O HOH A 2302 1.92 REMARK 500 OE1 GLU A 24 O HOH A 2302 2.00 REMARK 500 OE2 GLU A 276 O HOH A 2303 2.00 REMARK 500 O ASP A 2055 NH2 ARG A 2067 2.02 REMARK 500 OE1 GLN A 2118 O HOH A 2304 2.05 REMARK 500 O HOH A 2707 O HOH A 2778 2.11 REMARK 500 O HOH A 2304 O HOH A 2752 2.13 REMARK 500 O HOH A 2626 O HOH A 2796 2.14 REMARK 500 O HOH A 2339 O HOH A 2694 2.17 REMARK 500 O HOH A 2691 O HOH A 2727 2.18 REMARK 500 O HOH A 2308 O HOH A 2320 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 290 O HOH A 2732 4445 2.12 REMARK 500 O HOH A 2691 O HOH A 2694 4545 2.14 REMARK 500 O HOH A 2514 O HOH A 2681 2554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 27 CB LYS A 27 CG 0.170 REMARK 500 LYS A 27 CE LYS A 27 NZ 0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 27 CB - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 LYS A 27 N - CA - CB ANGL. DEV. = -18.0 DEGREES REMARK 500 LYS A 27 CA - CB - CG ANGL. DEV. = -18.9 DEGREES REMARK 500 LYS A 27 CD - CE - NZ ANGL. DEV. = -23.3 DEGREES REMARK 500 GLU A 47 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 GLU A 47 OE1 - CD - OE2 ANGL. DEV. = -33.4 DEGREES REMARK 500 GLU A 47 CG - CD - OE1 ANGL. DEV. = 31.3 DEGREES REMARK 500 GLU A 47 CG - CD - OE2 ANGL. DEV. = -19.9 DEGREES REMARK 500 PHE A 260 CB - CG - CD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -110.44 44.78 REMARK 500 ASN A 102 58.55 33.29 REMARK 500 LEU A 124 79.86 -154.01 REMARK 500 ALA A 170 -76.33 -82.60 REMARK 500 TYR A 285 -51.45 -123.53 REMARK 500 ALA A1030 -127.25 -131.72 REMARK 500 SER A1107 -159.44 -141.04 REMARK 500 ASP A2090 39.91 -96.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 26 LYS A 27 105.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 14 0.13 SIDE CHAIN REMARK 500 GLU A 47 0.13 SIDE CHAIN REMARK 500 PHE A 260 0.06 SIDE CHAIN REMARK 500 PHE A2095 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 26 10.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2826 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2827 DISTANCE = 6.13 ANGSTROMS DBREF 6ZHO A 2 368 UNP P0AEX9 MALE_ECOLI 26 392 DBREF 6ZHO A 1024 1111 UNP O60894 RAMP1_HUMAN 24 111 DBREF 6ZHO A 2029 2144 UNP Q16602 CALRL_HUMAN 29 144 SEQADV 6ZHO ALA A 0 UNP P0AEX9 EXPRESSION TAG SEQADV 6ZHO SER A 1 UNP P0AEX9 EXPRESSION TAG SEQADV 6ZHO ASN A 369 UNP P0AEX9 LINKER SEQADV 6ZHO ALA A 370 UNP P0AEX9 LINKER SEQADV 6ZHO ALA A 371 UNP P0AEX9 LINKER SEQADV 6ZHO ALA A 372 UNP P0AEX9 LINKER SEQADV 6ZHO GLU A 1022 UNP P0AEX9 LINKER SEQADV 6ZHO PHE A 1023 UNP P0AEX9 LINKER SEQADV 6ZHO GLY A 2020 UNP O60894 LINKER SEQADV 6ZHO SER A 2021 UNP O60894 LINKER SEQADV 6ZHO ALA A 2022 UNP O60894 LINKER SEQADV 6ZHO GLY A 2023 UNP O60894 LINKER SEQADV 6ZHO SER A 2024 UNP O60894 LINKER SEQADV 6ZHO ALA A 2025 UNP O60894 LINKER SEQADV 6ZHO GLY A 2026 UNP O60894 LINKER SEQADV 6ZHO SER A 2027 UNP O60894 LINKER SEQADV 6ZHO ALA A 2028 UNP O60894 LINKER SEQADV 6ZHO GLN A 2066 UNP Q16602 ASN 66 CONFLICT SEQADV 6ZHO GLN A 2118 UNP Q16602 ASN 118 CONFLICT SEQADV 6ZHO HIS A 2145 UNP Q16602 EXPRESSION TAG SEQADV 6ZHO HIS A 2146 UNP Q16602 EXPRESSION TAG SEQADV 6ZHO HIS A 2147 UNP Q16602 EXPRESSION TAG SEQADV 6ZHO HIS A 2148 UNP Q16602 EXPRESSION TAG SEQADV 6ZHO HIS A 2149 UNP Q16602 EXPRESSION TAG SEQADV 6ZHO HIS A 2150 UNP Q16602 EXPRESSION TAG SEQRES 1 A 594 ALA SER ALA LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP SEQRES 2 A 594 ILE ASN GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL SEQRES 3 A 594 GLY LYS LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR SEQRES 4 A 594 VAL GLU HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN SEQRES 5 A 594 VAL ALA ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP SEQRES 6 A 594 ALA HIS ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU SEQRES 7 A 594 LEU ALA GLU ILE THR PRO ASP LYS ALA PHE GLN ASP LYS SEQRES 8 A 594 LEU TYR PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY SEQRES 9 A 594 LYS LEU ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER SEQRES 10 A 594 LEU ILE TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS SEQRES 11 A 594 THR TRP GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS SEQRES 12 A 594 ALA LYS GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU SEQRES 13 A 594 PRO TYR PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY SEQRES 14 A 594 TYR ALA PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS SEQRES 15 A 594 ASP VAL GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU SEQRES 16 A 594 THR PHE LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN SEQRES 17 A 594 ALA ASP THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN SEQRES 18 A 594 LYS GLY GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA SEQRES 19 A 594 TRP SER ASN ILE ASP THR SER LYS VAL ASN TYR GLY VAL SEQRES 20 A 594 THR VAL LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO SEQRES 21 A 594 PHE VAL GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER SEQRES 22 A 594 PRO ASN LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR SEQRES 23 A 594 LEU LEU THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP SEQRES 24 A 594 LYS PRO LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU SEQRES 25 A 594 GLU LEU ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU SEQRES 26 A 594 ASN ALA GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN SEQRES 27 A 594 MET SER ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE SEQRES 28 A 594 ASN ALA ALA SER GLY ARG GLN THR VAL ASP GLU ALA LEU SEQRES 29 A 594 LYS ASP ALA GLN THR ASN ALA ALA ALA GLU PHE THR THR SEQRES 30 A 594 ALA CYS GLN GLU ALA ASN TYR GLY ALA LEU LEU ARG GLU SEQRES 31 A 594 LEU CYS LEU THR GLN PHE GLN VAL ASP MET GLU ALA VAL SEQRES 32 A 594 GLY GLU THR LEU TRP CYS ASP TRP GLY ARG THR ILE ARG SEQRES 33 A 594 SER TYR ARG GLU LEU ALA ASP CYS THR TRP HIS MET ALA SEQRES 34 A 594 GLU LYS LEU GLY CYS PHE TRP PRO ASN ALA GLU VAL ASP SEQRES 35 A 594 ARG PHE PHE LEU ALA VAL HIS GLY ARG TYR PHE ARG SER SEQRES 36 A 594 CYS PRO ILE SER GLY ARG ALA VAL GLY SER ALA GLY SER SEQRES 37 A 594 ALA GLY SER ALA GLU ASP SER ILE GLN LEU GLY VAL THR SEQRES 38 A 594 ARG ASN LYS ILE MET THR ALA GLN TYR GLU CYS TYR GLN SEQRES 39 A 594 LYS ILE MET GLN ASP PRO ILE GLN GLN ALA GLU GLY VAL SEQRES 40 A 594 TYR CYS GLN ARG THR TRP ASP GLY TRP LEU CYS TRP ASN SEQRES 41 A 594 ASP VAL ALA ALA GLY THR GLU SER MET GLN LEU CYS PRO SEQRES 42 A 594 ASP TYR PHE GLN ASP PHE ASP PRO SER GLU LYS VAL THR SEQRES 43 A 594 LYS ILE CYS ASP GLN ASP GLY ASN TRP PHE ARG HIS PRO SEQRES 44 A 594 ALA SER GLN ARG THR TRP THR ASN TYR THR GLN CYS ASN SEQRES 45 A 594 VAL ASN THR HIS GLU LYS VAL LYS THR ALA LEU ASN LEU SEQRES 46 A 594 PHE TYR LEU HIS HIS HIS HIS HIS HIS HET GLC B 1 12 HET GLC B 2 11 HET QLQ A2201 56 HET PG4 A2202 13 HET PG4 A2203 13 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM QLQ ~{N}-[(2~{R})-3-(7-METHYL-2~{H}-INDAZOL-5-YL)-1- HETNAM 2 QLQ OXIDANYLIDENE-1-[[(2~{S})-1-OXIDANYLIDENE-3-PIPERIDIN- HETNAM 3 QLQ 4-YL-1-(4-PYRIDIN-4-YLPIPERAZIN-1-YL)PROPAN-2- HETNAM 4 QLQ YL]AMINO]PROPAN-2-YL]-2-OXIDANYLIDENE-SPIRO[1~{H}- HETNAM 5 QLQ PYRIDO[2,3-D][1,3]OXAZINE-4,4'-PIPERIDINE]-1'- HETNAM 6 QLQ CARBOXAMIDE HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 QLQ C40 H49 N11 O5 FORMUL 4 PG4 2(C8 H18 O5) FORMUL 6 HOH *527(H2 O) HELIX 1 AA1 GLY A 18 GLY A 34 1 17 HELIX 2 AA2 LYS A 44 THR A 55 1 12 HELIX 3 AA3 ARG A 68 SER A 75 1 8 HELIX 4 AA4 ASP A 84 ASP A 89 1 6 HELIX 5 AA5 TYR A 92 VAL A 99 1 8 HELIX 6 AA6 GLU A 133 LYS A 144 1 12 HELIX 7 AA7 GLU A 155 ASP A 166 1 12 HELIX 8 AA8 ASN A 187 ASN A 203 1 17 HELIX 9 AA9 ASP A 211 LYS A 221 1 11 HELIX 10 AB1 GLY A 230 TRP A 232 5 3 HELIX 11 AB2 ALA A 233 LYS A 241 1 9 HELIX 12 AB3 ASN A 274 TYR A 285 1 12 HELIX 13 AB4 THR A 288 LYS A 299 1 12 HELIX 14 AB5 LEU A 306 ALA A 314 1 9 HELIX 15 AB6 ASP A 316 GLY A 329 1 14 HELIX 16 AB7 GLN A 337 SER A 354 1 18 HELIX 17 AB8 THR A 358 ALA A 1026 1 20 HELIX 18 AB9 ASN A 1031 CYS A 1040 1 10 HELIX 19 AC1 CYS A 1040 GLY A 1052 1 13 HELIX 20 AC2 GLU A 1053 TRP A 1056 5 4 HELIX 21 AC3 ASP A 1058 LEU A 1080 1 23 HELIX 22 AC4 ASN A 1086 PHE A 1101 1 16 HELIX 23 AC5 GLY A 2035 ASP A 2055 1 21 HELIX 24 AC6 TYR A 2124 VAL A 2129 1 6 HELIX 25 AC7 GLU A 2133 LEU A 2144 1 12 SHEET 1 AA1 6 LYS A 36 GLU A 40 0 SHEET 2 AA1 6 LYS A 8 TRP A 12 1 N ILE A 11 O GLU A 40 SHEET 3 AA1 6 ILE A 61 ALA A 65 1 O PHE A 63 N TRP A 12 SHEET 4 AA1 6 PHE A 260 ILE A 268 -1 O GLY A 267 N ILE A 62 SHEET 5 AA1 6 TYR A 108 GLU A 113 -1 N GLU A 113 O GLY A 262 SHEET 6 AA1 6 ALA A 303 VAL A 304 -1 O ALA A 303 N VAL A 112 SHEET 1 AA2 5 LYS A 36 GLU A 40 0 SHEET 2 AA2 5 LYS A 8 TRP A 12 1 N ILE A 11 O GLU A 40 SHEET 3 AA2 5 ILE A 61 ALA A 65 1 O PHE A 63 N TRP A 12 SHEET 4 AA2 5 PHE A 260 ILE A 268 -1 O GLY A 267 N ILE A 62 SHEET 5 AA2 5 GLU A 330 ILE A 331 1 O GLU A 330 N VAL A 261 SHEET 1 AA3 2 ARG A 100 TYR A 101 0 SHEET 2 AA3 2 LYS A 104 LEU A 105 -1 O LYS A 104 N TYR A 101 SHEET 1 AA4 4 SER A 147 LEU A 149 0 SHEET 2 AA4 4 THR A 224 ASN A 229 1 O ALA A 225 N SER A 147 SHEET 3 AA4 4 SER A 116 ASN A 120 -1 N ASN A 120 O ALA A 225 SHEET 4 AA4 4 TYR A 244 THR A 247 -1 O THR A 247 N LEU A 117 SHEET 1 AA5 2 TYR A 169 GLU A 174 0 SHEET 2 AA5 2 LYS A 177 GLY A 184 -1 O ASP A 179 N LYS A 172 SHEET 1 AA6 2 THR A 251 PHE A 252 0 SHEET 2 AA6 2 GLN A 255 PRO A 256 -1 O GLN A 255 N PHE A 252 SHEET 1 AA7 2 TYR A2064 CYS A2065 0 SHEET 2 AA7 2 VAL A2078 ALA A2079 -1 O VAL A2078 N CYS A2065 SHEET 1 AA8 2 THR A2068 TRP A2069 0 SHEET 2 AA8 2 CYS A2074 TRP A2075 -1 O TRP A2075 N THR A2068 SHEET 1 AA9 2 THR A2082 LEU A2087 0 SHEET 2 AA9 2 LYS A2100 CYS A2105 -1 O VAL A2101 N GLN A2086 SSBOND 1 CYS A 1027 CYS A 1082 1555 1555 2.05 SSBOND 2 CYS A 1040 CYS A 1072 1555 1555 2.11 SSBOND 3 CYS A 1057 CYS A 1104 1555 1555 2.05 SSBOND 4 CYS A 2048 CYS A 2074 1555 1555 2.08 SSBOND 5 CYS A 2065 CYS A 2105 1555 1555 2.03 SSBOND 6 CYS A 2088 CYS A 2127 1555 1555 2.05 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.43 CISPEP 1 TRP A 1084 PRO A 1085 0 -1.48 CRYST1 71.725 76.961 97.028 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013942 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010306 0.00000