HEADER DNA BINDING PROTEIN 24-JUN-20 6ZHY TITLE CRYO-EM STRUCTURE OF THE REGULATORY LINKER OF ALC1 BOUND TO THE TITLE 2 NUCLEOSOME'S ACIDIC PATCH: HEXASOME CLASS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HISTONE H2A TYPE 1; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: HISTONE H2B 1.1; COMPND 16 CHAIN: D; COMPND 17 SYNONYM: H2B1.1; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: DNA (110-MER) WIDOM 601 SEQUENCE; COMPND 21 CHAIN: I; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 6; COMPND 24 MOLECULE: DNA (110-MER) WIDOM 601 SEQUENCE; COMPND 25 CHAIN: J; COMPND 26 ENGINEERED: YES; COMPND 27 MOL_ID: 7; COMPND 28 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE; COMPND 29 CHAIN: K; COMPND 30 SYNONYM: AMPLIFIED IN LIVER CANCER PROTEIN 1; COMPND 31 EC: 3.6.4.12; COMPND 32 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 3 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 4 ORGANISM_TAXID: 8355; SOURCE 5 GENE: XELAEV_18002543MG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 10 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 11 ORGANISM_TAXID: 8355; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 16 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 17 ORGANISM_TAXID: 8355; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 22 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 23 ORGANISM_TAXID: 8355; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 5; SOURCE 27 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 28 ORGANISM_TAXID: 32630; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 MOL_ID: 6; SOURCE 32 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 33 ORGANISM_TAXID: 32630; SOURCE 34 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 36 MOL_ID: 7; SOURCE 37 SYNTHETIC: YES; SOURCE 38 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 39 ORGANISM_COMMON: HUMAN; SOURCE 40 ORGANISM_TAXID: 9606 KEYWDS ALC1, CHD1L, CHROMATIN REMODELER, DNA DAMAGE RESPONSE, NUCLEOSOME, KEYWDS 2 HEXASOME, NUCLEAR PROTEIN, GENE REGULATION, DNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.BACIC,G.GAULLIER,S.DEINDL REVDAT 4 10-JUL-24 6ZHY 1 REMARK REVDAT 3 14-JUL-21 6ZHY 1 HEADER KEYWDS REMARK HELIX REVDAT 3 2 1 SHEET ATOM REVDAT 2 13-JAN-21 6ZHY 1 JRNL REVDAT 1 23-DEC-20 6ZHY 0 JRNL AUTH L.C.LEHMANN,L.BACIC,G.HEWITT,K.BRACKMANN,A.SABANTSEV, JRNL AUTH 2 G.GAULLIER,S.PYTHAROPOULOU,G.DEGLIESPOSTI,H.OKKENHAUG,S.TAN, JRNL AUTH 3 A.COSTA,J.M.SKEHEL,S.J.BOULTON,S.DEINDL JRNL TITL MECHANISTIC INSIGHTS INTO REGULATION OF THE ALC1 REMODELER JRNL TITL 2 BY THE NUCLEOSOME ACIDIC PATCH. JRNL REF CELL REP V. 33 08529 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 33357431 JRNL DOI 10.1016/J.CELREP.2020.108529 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.D.GODDARD,C.C.HUANG,E.C.MENG,E.F.PETTERSEN,G.S.COUCH, REMARK 1 AUTH 2 J.H.MORRIS,T.E.FERRIN REMARK 1 TITL UCSF CHIMERAX: MEETING MODERN CHALLENGES IN VISUALIZATION REMARK 1 TITL 2 AND ANALYSIS REMARK 1 REF PROTEIN SCI. V. 27 14 2018 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 28710774 REMARK 1 DOI 10.1002/PRO.3235 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.I.CROLL REMARK 1 TITL ISOLDE: A PHYSICALLY REALISTIC ENVIRONMENT FOR MODEL REMARK 1 TITL 2 BUILDING INTO LOW-RESOLUTION ELECTRON-DENSITY MAPS. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 74 519 2018 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 DOI 10.1107/S2059798318002425 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.ZIVANOV,T.NAKANE,S.H.W.SCHERES REMARK 1 TITL ESTIMATION OF HIGH-ORDER ABERRATIONS AND ANISOTROPIC REMARK 1 TITL 2 MAGNIFICATION FROM CRYO-EM DATA SETS IN REMARK 1 REF IUCRJ V. 7 253 2020 REMARK 1 REFN ESSN 2052-2525 REMARK 1 DOI 10.1107/S2052252520000081 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.H.SCHERES REMARK 1 TITL RELION: IMPLEMENTATION OF A BAYESIAN APPROACH TO CRYO-EM REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J. STRUCT. BIOL. V. 180 519 2012 REMARK 1 REFN ESSN 1095-8657 REMARK 1 DOI 10.1016/J.JSB.2012.09.006 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, GCTF, UCSF CHIMERA, RELION, REMARK 3 RELION, RELION, RELION, ISOLDE REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3LZ0 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : REAL-SPACE CC BETWEEN MODEL AND REMARK 3 MAP REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 414641 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6ZHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109561. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : A HEXASOME (NUCLEOSOME LACKING REMARK 245 ONE OF THE TWO H2A-H2B DIMERS) WITH ITS ACIDIC PATCH BOUND BY REMARK 245 THE ALC1 LINKER REGULATORY REGION.; HISTONES; DNA; CHROMODOMAIN- REMARK 245 HELICASE-DNA-BINDING PROTEIN 1-LIKE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : CURRENT 20 MA REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT TIME 2.5 S, BLOT FORCE 0. REMARK 245 TWO SAMPLE APPLICATIONS AND REMARK 245 BLOTS WERE PERFORMED BEFORE REMARK 245 VITRIFICATION. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 19897 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5040.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -297.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, I, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 ALA A 135 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 MET C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 THR C 10 REMARK 465 ARG C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 ALA C 14 REMARK 465 THR C 120 REMARK 465 GLU C 121 REMARK 465 SER C 122 REMARK 465 SER C 123 REMARK 465 LYS C 124 REMARK 465 SER C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 SER C 128 REMARK 465 LYS C 129 REMARK 465 MET D 0 REMARK 465 ALA D 1 REMARK 465 LYS D 2 REMARK 465 SER D 3 REMARK 465 ALA D 4 REMARK 465 PRO D 5 REMARK 465 ALA D 6 REMARK 465 PRO D 7 REMARK 465 LYS D 8 REMARK 465 LYS D 9 REMARK 465 GLY D 10 REMARK 465 SER D 11 REMARK 465 LYS D 12 REMARK 465 LYS D 13 REMARK 465 ALA D 14 REMARK 465 VAL D 15 REMARK 465 THR D 16 REMARK 465 LYS D 17 REMARK 465 THR D 18 REMARK 465 GLN D 19 REMARK 465 LYS D 20 REMARK 465 LYS D 21 REMARK 465 ASP D 22 REMARK 465 GLY D 23 REMARK 465 LYS D 24 REMARK 465 LYS D 25 REMARK 465 ARG D 26 REMARK 465 ARG D 27 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 ARG F 23 REMARK 465 DT I 38 REMARK 465 DA I 39 REMARK 465 DG I 40 REMARK 465 DT I 41 REMARK 465 DC I 42 REMARK 465 DT I 43 REMARK 465 DC I 44 REMARK 465 DC I 45 REMARK 465 DA I 46 REMARK 465 DG I 47 REMARK 465 DG I 48 REMARK 465 DC I 49 REMARK 465 DA I 50 REMARK 465 DC I 51 REMARK 465 DG I 52 REMARK 465 DT I 53 REMARK 465 DG I 54 REMARK 465 DT I 55 REMARK 465 DC I 56 REMARK 465 DA I 57 REMARK 465 DG I 58 REMARK 465 DA I 59 REMARK 465 DT I 60 REMARK 465 DA I 61 REMARK 465 DT I 62 REMARK 465 DA I 63 REMARK 465 DT I 64 REMARK 465 DA I 65 REMARK 465 DC I 66 REMARK 465 DA I 67 REMARK 465 DT I 68 REMARK 465 DC I 69 REMARK 465 DG I 70 REMARK 465 DA I 71 REMARK 465 DT I 72 REMARK 465 DA J -72 REMARK 465 DT J -71 REMARK 465 DC J -70 REMARK 465 DG J -69 REMARK 465 DA J -68 REMARK 465 DT J -67 REMARK 465 DG J -66 REMARK 465 DT J -65 REMARK 465 DA J -64 REMARK 465 DT J -63 REMARK 465 DA J -62 REMARK 465 DT J -61 REMARK 465 DA J -60 REMARK 465 DT J -59 REMARK 465 DC J -58 REMARK 465 DT J -57 REMARK 465 DG J -56 REMARK 465 DA J -55 REMARK 465 DC J -54 REMARK 465 DA J -53 REMARK 465 DC J -52 REMARK 465 DG J -51 REMARK 465 DT J -50 REMARK 465 DG J -49 REMARK 465 DC J -48 REMARK 465 DC J -47 REMARK 465 DT J -46 REMARK 465 DG J -45 REMARK 465 DG J -44 REMARK 465 DA J -43 REMARK 465 DG J -42 REMARK 465 DA J -41 REMARK 465 DC J -40 REMARK 465 DT J -39 REMARK 465 DA J -38 REMARK 465 GLU K 604 REMARK 465 LYS K 605 REMARK 465 ALA K 606 REMARK 465 SER K 607 REMARK 465 GLN K 608 REMARK 465 GLU K 609 REMARK 465 ARG K 614 REMARK 465 ASN K 615 REMARK 465 LYS K 616 REMARK 465 GLY K 617 REMARK 465 SER K 618 REMARK 465 VAL K 619 REMARK 465 LEU K 620 REMARK 465 ILE K 621 REMARK 465 PRO K 622 REMARK 465 GLY K 623 REMARK 465 LEU K 624 REMARK 465 VAL K 625 REMARK 465 GLU K 626 REMARK 465 GLY K 627 REMARK 465 SER K 628 REMARK 465 THR K 629 REMARK 465 LYS K 630 REMARK 465 ARG K 631 REMARK 465 LYS K 632 REMARK 465 ARG K 633 REMARK 465 VAL K 634 REMARK 465 LEU K 635 REMARK 465 SER K 636 REMARK 465 PRO K 637 REMARK 465 GLU K 638 REMARK 465 GLU K 639 REMARK 465 LYS K 640 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG J -37 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG I -58 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC I -56 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG I -49 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT I -43 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG I -37 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT I -36 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA I -35 O4' - C1' - N9 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG I -34 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC I -32 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC I -27 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC I -21 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG I -19 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT I -16 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG I -7 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC I -2 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC I 10 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC I 19 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC I 22 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG I 26 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG I 28 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT I 30 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DT I 30 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT I 31 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT I 34 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC I 35 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG J -36 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA J -34 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT J -32 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG J -22 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG J -7 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG J -5 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC J -2 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA J 6 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC J 11 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA J 16 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT J 22 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT J 25 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG J 27 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT J 66 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT J 67 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC J 68 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG J 70 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT J 72 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 95 39.88 -97.74 REMARK 500 ARG F 95 46.58 -141.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 83 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-11221 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE REGULATORY LINKER OF ALC1 BOUND TO THE REMARK 900 NUCLEOSOME'S ACIDIC PATCH: HEXASOME CLASS. DBREF1 6ZHY A 0 135 UNP A0A310TTQ1_XENLA DBREF2 6ZHY A A0A310TTQ1 1 136 DBREF 6ZHY B 0 102 UNP P62799 H4_XENLA 1 103 DBREF 6ZHY C 0 129 UNP P06897 H2A1_XENLA 1 130 DBREF 6ZHY D 1 122 UNP P02281 H2B11_XENLA 5 126 DBREF1 6ZHY E 0 135 UNP A0A310TTQ1_XENLA DBREF2 6ZHY E A0A310TTQ1 1 136 DBREF 6ZHY F 0 102 UNP P62799 H4_XENLA 1 103 DBREF 6ZHY I -72 72 PDB 6ZHY 6ZHY -72 72 DBREF 6ZHY J -72 72 PDB 6ZHY 6ZHY -72 72 DBREF 6ZHY K 604 639 UNP Q86WJ1 CHD1L_HUMAN 604 639 SEQADV 6ZHY ALA A 110 UNP A0A310TTQ CYS 111 ENGINEERED MUTATION SEQADV 6ZHY ARG C 99 UNP P06897 GLY 100 CONFLICT SEQADV 6ZHY SER C 123 UNP P06897 ALA 124 CONFLICT SEQADV 6ZHY MET D 0 UNP P02281 INITIATING METHIONINE SEQADV 6ZHY THR D 29 UNP P02281 SER 33 CONFLICT SEQADV 6ZHY ALA E 110 UNP A0A310TTQ CYS 111 ENGINEERED MUTATION SEQADV 6ZHY LYS K 640 UNP Q86WJ1 EXPRESSION TAG SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 A 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS THR ARG ALA SEQRES 2 C 130 LYS ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 C 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 C 130 TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 C 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 C 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 C 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA VAL ARG ASN ASP SEQRES 8 C 130 GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA SEQRES 9 C 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN SER VAL LEU LEU SEQRES 10 C 130 PRO LYS LYS THR GLU SER SER LYS SER ALA LYS SER LYS SEQRES 1 D 123 MET ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SER LYS SEQRES 2 D 123 LYS ALA VAL THR LYS THR GLN LYS LYS ASP GLY LYS LYS SEQRES 3 D 123 ARG ARG LYS THR ARG LYS GLU SER TYR ALA ILE TYR VAL SEQRES 4 D 123 TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SEQRES 5 D 123 SER SER LYS ALA MET SER ILE MET ASN SER PHE VAL ASN SEQRES 6 D 123 ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU SEQRES 7 D 123 ALA HIS TYR ASN LYS ARG SER THR ILE THR SER ARG GLU SEQRES 8 D 123 ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU SEQRES 9 D 123 ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR SEQRES 10 D 123 LYS TYR THR SER ALA LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 E 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 I 145 DA DT DC DA DG DA DA DT DC DC DC DG DG SEQRES 2 I 145 DT DG DC DC DG DA DG DG DC DC DG DC DT SEQRES 3 I 145 DC DA DA DT DT DG DG DT DC DG DT DA DG SEQRES 4 I 145 DA DC DA DG DC DT DC DT DA DG DC DA DC SEQRES 5 I 145 DC DG DC DT DT DA DA DA DC DG DC DA DC SEQRES 6 I 145 DG DT DA DC DG DC DG DC DT DG DT DC DC SEQRES 7 I 145 DC DC DC DG DC DG DT DT DT DT DA DA DC SEQRES 8 I 145 DC DG DC DC DA DA DG DG DG DG DA DT DT SEQRES 9 I 145 DA DC DT DC DC DC DT DA DG DT DC DT DC SEQRES 10 I 145 DC DA DG DG DC DA DC DG DT DG DT DC DA SEQRES 11 I 145 DG DA DT DA DT DA DT DA DC DA DT DC DG SEQRES 12 I 145 DA DT SEQRES 1 J 145 DA DT DC DG DA DT DG DT DA DT DA DT DA SEQRES 2 J 145 DT DC DT DG DA DC DA DC DG DT DG DC DC SEQRES 3 J 145 DT DG DG DA DG DA DC DT DA DG DG DG DA SEQRES 4 J 145 DG DT DA DA DT DC DC DC DC DT DT DG DG SEQRES 5 J 145 DC DG DG DT DT DA DA DA DA DC DG DC DG SEQRES 6 J 145 DG DG DG DG DA DC DA DG DC DG DC DG DT SEQRES 7 J 145 DA DC DG DT DG DC DG DT DT DT DA DA DG SEQRES 8 J 145 DC DG DG DT DG DC DT DA DG DA DG DC DT SEQRES 9 J 145 DG DT DC DT DA DC DG DA DC DC DA DA DT SEQRES 10 J 145 DT DG DA DG DC DG DG DC DC DT DC DG DG SEQRES 11 J 145 DC DA DC DC DG DG DG DA DT DT DC DT DG SEQRES 12 J 145 DA DT SEQRES 1 K 37 GLU LYS ALA SER GLN GLU GLY ARG SER LEU ARG ASN LYS SEQRES 2 K 37 GLY SER VAL LEU ILE PRO GLY LEU VAL GLU GLY SER THR SEQRES 3 K 37 LYS ARG LYS ARG VAL LEU SER PRO GLU GLU LYS HELIX 1 AA1 GLY A 44 SER A 57 1 14 HELIX 2 AA2 ARG A 63 LYS A 79 1 17 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 MET A 120 GLY A 132 1 13 HELIX 5 AA5 ASP B 24 ILE B 29 5 6 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLN B 93 1 12 HELIX 9 AA9 THR C 16 GLY C 22 1 7 HELIX 10 AB1 PRO C 26 GLY C 37 1 12 HELIX 11 AB2 ALA C 45 ASN C 73 1 29 HELIX 12 AB3 ILE C 79 ASN C 89 1 11 HELIX 13 AB4 ASP C 90 LEU C 97 1 8 HELIX 14 AB5 GLN C 112 LEU C 116 5 5 HELIX 15 AB6 TYR D 34 HIS D 46 1 13 HELIX 16 AB7 SER D 52 ASN D 81 1 30 HELIX 17 AB8 THR D 87 LEU D 99 1 13 HELIX 18 AB9 PRO D 100 ALA D 121 1 22 HELIX 19 AC1 GLY E 44 SER E 57 1 14 HELIX 20 AC2 ARG E 63 LYS E 79 1 17 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 ARG E 131 1 12 HELIX 23 AC5 ASP F 24 ILE F 29 5 6 HELIX 24 AC6 THR F 30 GLY F 41 1 12 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 GLN F 93 1 12 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA3 2 ARG C 42 VAL C 43 0 SHEET 2 AA3 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 42 SHEET 1 AA4 2 ARG C 77 ILE C 78 0 SHEET 2 AA4 2 GLY D 50 ILE D 51 1 O GLY D 50 N ILE C 78 SHEET 1 AA5 2 THR C 101 ILE C 102 0 SHEET 2 AA5 2 LEU F 97 TYR F 98 1 O TYR F 98 N THR C 101 SHEET 1 AA6 2 ARG E 83 PHE E 84 0 SHEET 2 AA6 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA7 2 THR E 118 ILE E 119 0 SHEET 2 AA7 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000