HEADER ANTITUMOR PROTEIN 25-JUN-20 6ZIE TITLE CRYSTAL STRUCTURE OF MCL-1 IN COMPLEX WITH A NEUTRALIZING ALPHABODY TITLE 2 CMPX-383B COMPND MOL_ID: 1; COMPND 2 MOLECULE: CMPX-383B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL- COMPND 7 1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: BCL-2-LIKE PROTEIN 3,BCL2-L-3,BCL-2-RELATED PROTEIN COMPND 10 EAT/MCL1,MCL1/EAT; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: MCL1, BCL2L3; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DE NOVO PROTEIN DESIGN, 3 HELICAL ANTIPARALLEL COILED COIL, CELL KEYWDS 2 PENETRATING ALPHABODY MCL-1 NEUTRALIZING ALPHABODY, ANTITUMOR KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.PANNECOUCKE,S.N.SAVVIDES,J.DESMET,I.LASTERS REVDAT 2 31-JAN-24 6ZIE 1 REMARK REVDAT 1 28-APR-21 6ZIE 0 JRNL AUTH E.PANNECOUCKE,M.VAN TRIMPONT,J.DESMET,T.PIETERS,L.REUNES, JRNL AUTH 2 L.DEMOEN,M.VUYLSTEKE,S.LOVERIX,K.VANDENBROUCKE,P.ALARD, JRNL AUTH 3 P.HENDERIKX,S.DEROO,F.BAATZ,E.LORENT,S.THIOLLOY,K.SOMERS, JRNL AUTH 4 Y.MCGRATH,P.VAN VLIERBERGHE,I.LASTERS,S.N.SAVVIDES JRNL TITL CELL-PENETRATING ALPHABODY PROTEIN SCAFFOLDS FOR JRNL TITL 2 INTRACELLULAR DRUG TARGETING. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 33771865 JRNL DOI 10.1126/SCIADV.ABE1682 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1060 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.32 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.53 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2604 REMARK 3 BIN FREE R VALUE : 0.1974 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 21 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2151 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.53650 REMARK 3 B22 (A**2) : -4.53650 REMARK 3 B33 (A**2) : 9.07310 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.287 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.213 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.274 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.210 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2187 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2938 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 812 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 371 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2187 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 308 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1604 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.80 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.16 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|6 - A|144 } REMARK 3 ORIGIN FOR THE GROUP (A): 17.9169 1.0832 -14.2105 REMARK 3 T TENSOR REMARK 3 T11: 0.1774 T22: -0.0832 REMARK 3 T33: -0.0745 T12: 0.0177 REMARK 3 T13: 0.0277 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: -0.9196 L22: 4.0196 REMARK 3 L33: 2.1882 L12: 0.6442 REMARK 3 L13: -0.3703 L23: 0.4249 REMARK 3 S TENSOR REMARK 3 S11: 0.1251 S12: -0.2554 S13: -0.0347 REMARK 3 S21: -0.2554 S22: -0.1114 S23: -0.0937 REMARK 3 S31: -0.0347 S32: -0.0937 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|171 - B|322 } REMARK 3 ORIGIN FOR THE GROUP (A): 20.2571 24.4409 -4.0811 REMARK 3 T TENSOR REMARK 3 T11: 0.2235 T22: -0.1529 REMARK 3 T33: -0.0453 T12: 0.022 REMARK 3 T13: 0.0757 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.6202 L22: 1.6157 REMARK 3 L33: 2.0253 L12: -0.1 REMARK 3 L13: 1.1568 L23: 0.0747 REMARK 3 S TENSOR REMARK 3 S11: 0.11 S12: 0.0271 S13: -0.2778 REMARK 3 S21: 0.0271 S22: -0.0346 S23: -0.2309 REMARK 3 S31: -0.2778 S32: -0.2309 S33: -0.0754 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZIE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87290 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17660 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.11120 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MK8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% (W/V) PEG 3000 0.1 M SODIUM ACETATE REMARK 280 PH 5.5 0.2 M ZINC ACETATE DIHYDRATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.09633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.19267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.64450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 217.74083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.54817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.09633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 174.19267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 217.74083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 130.64450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.54817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 SER A 5 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 ALA A 36 REMARK 465 GLY A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 GLY A 40 REMARK 465 GLY A 76 REMARK 465 ALA A 77 REMARK 465 GLY A 78 REMARK 465 ALA A 79 REMARK 465 GLY A 80 REMARK 465 ALA A 81 REMARK 465 GLY A 82 REMARK 465 GLY A 83 REMARK 465 GLY B 166 REMARK 465 SER B 167 REMARK 465 HIS B 168 REMARK 465 MET B 169 REMARK 465 GLY B 170 REMARK 465 GLY B 200 REMARK 465 ARG B 201 REMARK 465 ASP B 323 REMARK 465 LEU B 324 REMARK 465 GLU B 325 REMARK 465 GLY B 326 REMARK 465 GLY B 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 74 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 91.49 -69.13 REMARK 500 ASN B 239 100.71 -56.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 49 OE2 REMARK 620 2 GLU A 121 OE2 60.0 REMARK 620 3 HIS B 252 NE2 131.6 102.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE2 REMARK 620 2 GLU A 108 OE1 109.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 133 OE2 REMARK 620 2 GLU A 133 OE1 14.5 REMARK 620 3 GLU A 137 OE2 91.7 94.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 NE2 REMARK 620 2 GLU B 292 OE2 73.8 REMARK 620 3 ASP B 296 OD2 74.6 0.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 236 OD1 REMARK 620 2 ASP B 242 OD2 93.0 REMARK 620 3 HIS B 277 NE2 117.4 94.1 REMARK 620 N 1 2 DBREF 6ZIE A 1 144 PDB 6ZIE 6ZIE 1 144 DBREF 6ZIE B 172 327 UNP Q07820 MCL1_HUMAN 172 327 SEQADV 6ZIE GLY B 166 UNP Q07820 EXPRESSION TAG SEQADV 6ZIE SER B 167 UNP Q07820 EXPRESSION TAG SEQADV 6ZIE HIS B 168 UNP Q07820 EXPRESSION TAG SEQADV 6ZIE MET B 169 UNP Q07820 EXPRESSION TAG SEQADV 6ZIE GLY B 170 UNP Q07820 EXPRESSION TAG SEQADV 6ZIE SER B 171 UNP Q07820 EXPRESSION TAG SEQRES 1 A 143 GLY SER HIS MET SER THR GLU GLN ILE GLN LYS ARG THR SEQRES 2 A 143 ALA ALA ILE GLN LYS ARG ILE ALA ALA ILE GLN LYS ARG SEQRES 3 A 143 ILE TYR ALA MET THR ALA SER GLY GLY ALA GLY ALA ALA SEQRES 4 A 143 GLY ALA GLY ALA GLY MET SER ILE GLU GLU ILE THR LYS SEQRES 5 A 143 GLN ILE ALA ALA ILE GLN LEU ARG ILE VAL GLY ASP GLN SEQRES 6 A 143 VAL GLN ILE ALA TYR GLN THR ALA SER GLY ALA GLY ALA SEQRES 7 A 143 GLY ALA GLY GLY MET SER THR GLU GLU ILE GLN LYS GLN SEQRES 8 A 143 ILE ALA ALA ILE GLU THR GLN ILE CYS LYS ILE GLU ALA SEQRES 9 A 143 ALA ILE GLU LEU LYS GLU ALA GLY ILE THR SER ASP PHE SEQRES 10 A 143 TYR PHE GLU LEU ILE ASN LYS ALA LYS THR CYS GLU GLY SEQRES 11 A 143 VAL GLU ALA LEU LYS GLU HIS ILE LEU ALA ALA HIS THR SEQRES 1 B 162 GLY SER HIS MET GLY SER ASP GLU LEU TYR ARG GLN SER SEQRES 2 B 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 B 162 GLY ALA LYS ASP THR LYS PRO MET GLY ARG SER GLY ALA SEQRES 4 B 162 THR SER ARG LYS ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 B 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 B 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL SEQRES 7 B 162 LYS SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP SEQRES 8 B 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 B 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN SEQRES 10 B 162 GLN GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR SEQRES 11 B 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 B 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 B 162 GLU ASP LEU GLU GLY GLY HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN B 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 5(ZN 2+) FORMUL 8 HOH *31(H2 O) HELIX 1 AA1 GLN A 8 ALA A 32 1 25 HELIX 2 AA2 SER A 46 THR A 72 1 27 HELIX 3 AA3 SER A 85 ALA A 112 1 28 HELIX 4 AA4 SER A 116 LYS A 125 1 10 HELIX 5 AA5 THR A 128 HIS A 143 1 16 HELIX 6 AA6 ASP B 172 GLY B 192 1 21 HELIX 7 AA7 GLY B 203 HIS B 224 1 22 HELIX 8 AA8 HIS B 224 ILE B 237 1 14 HELIX 9 AA9 ASP B 241 ILE B 251 1 11 HELIX 10 AB1 ASN B 260 ILE B 281 1 22 HELIX 11 AB2 GLN B 283 SER B 285 5 3 HELIX 12 AB3 CYS B 286 GLN B 309 1 24 HELIX 13 AB4 GLY B 311 HIS B 320 1 10 SSBOND 1 CYS A 101 CYS A 129 1555 1555 2.04 LINK OE2 GLU A 49 ZN ZN A 203 1555 1555 2.33 LINK OE2 GLU A 104 ZN ZN A 204 1555 10554 1.84 LINK OE1 GLU A 108 ZN ZN A 204 1555 1555 2.54 LINK OE2 GLU A 121 ZN ZN A 203 1555 8555 2.02 LINK OE2 GLU A 133 ZN ZN A 202 1555 1555 2.01 LINK OE1 GLU A 133 ZN ZN A 202 1555 10554 2.03 LINK OE2 GLU A 137 ZN ZN A 202 1555 1555 2.25 LINK NE2 HIS A 143 ZN ZN A 201 1555 1555 1.94 LINK ZN ZN A 201 OE2 GLU B 292 8555 1555 2.00 LINK ZN ZN A 201 OD2 ASP B 296 8555 1555 2.04 LINK ZN ZN A 203 NE2 HIS B 252 1555 1555 2.30 LINK OD1 ASP B 236 ZN ZN B 401 1555 1555 2.02 LINK OD2 ASP B 242 ZN ZN B 401 1555 1555 1.89 LINK NE2 HIS B 277 ZN ZN B 401 1555 1555 1.98 CRYST1 69.699 69.699 261.289 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014347 0.008283 0.000000 0.00000 SCALE2 0.000000 0.016567 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003827 0.00000