HEADER DNA BINDING PROTEIN 26-JUN-20 6ZII TITLE STRUCTURE OF THE ISOLATED REC DOMAIN OF RCSB FROM SALMONELLA ENTERICA TITLE 2 SEROVAR TYPHIMURIUM IN THE PRESENCE OF PHOSPHOMIMETIC BEF3- COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN RCSB; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 GENE: RCSB, A2O69_13765, A3042_19525, A3104_15245, A3111_09650, SOURCE 5 A3122_12425, A3146_09020, A3R41_09960, A3S30_08650, A3T21_09515, SOURCE 6 A3T81_14325, A3U32_14885, A3V03_11040, A3V89_10805, A3W57_14915, SOURCE 7 A3W75_12230, A3W86_06130, A3X15_13890, A3X55_20780, A3Y76_07040, SOURCE 8 A3Z96_14340, A4J27_11660, A4N07_14810, A4O05_20855, A4O41_07785, SOURCE 9 A4R48_08340, A6D61_15370, A9C21_06135, A9R92_21345, A9T39_16135, SOURCE 10 A9U46_10475, A9U64_21675, A9U69_21545, AAA76_10930, AAB27_22280, SOURCE 11 AAB39_09270, AAB79_16325, AAC08_11475, AAC35_11250, AAC42_16960, SOURCE 12 AAC44_14685, AAC95_13155, AAC98_10995, AAK29_10400, AAP89_11275, SOURCE 13 AAQ24_16295, AB424_18490, ABO94_17915, ABP11_15160, ABP87_18790, SOURCE 14 ABQ69_20575, ADQ28_04890, ADQ45_05825, AE787_14130, AF480_10895, SOURCE 15 AF488_12145, AF489_17255, AF497_17465, AGC55_06475, AGM99_13695, SOURCE 16 AGQ32_04375, AH984_14180, AHN93_10200, AIC76_12470, AKH62_06605, SOURCE 17 AKH68_10310, AKI16_13295, AL144_14225, AL151_13230, AL166_17425, SOURCE 18 AL168_14180, AL170_15835, AL174_14280, AL184_16885, APP08_20700, SOURCE 19 APY91_13970, AQ530_14880, AQ536_13855, AS118_05400, AT354_14865, SOURCE 20 AU613_13115, AU731_17745, AU805_14740, AU830_17945, AU839_16960, SOURCE 21 AU951_10785, AU965_14440, AVA38_10850, AVB77_17860, AVB94_12475, SOURCE 22 AVC05_13710, AVC09_15555, AVD08_14940, AVD75_10490, AVD94_16345, SOURCE 23 AVG17_17440, AVL02_06935, AVL16_12105, AVM19_11045, AWT30_16365, SOURCE 24 AXM10_15020, AXM23_15980, AXR84_09155, AXU58_12665, AXX99_08590, SOURCE 25 B1265_14695, B1398_15040, B1642_12470, B1B86_13860, B1B89_12995, SOURCE 26 B1I91_14010, B1P38_06210, B1Q82_08785, B2E31_12855, B4V59_14365, SOURCE 27 B4W90_11945, B5A40_18175, B6362_19530, B6G98_09840, B6M25_12470, SOURCE 28 B6M43_11445, B7071_09685, B7890_16815, B7J30_08950, B7Q27_13330, SOURCE 29 B8Y16_13920, B8Y36_10435, B8Z46_12215, B9653_08735, B9C61_09460, SOURCE 30 B9C71_10305, B9C90_09140, B9C91_11100, B9C96_06975, B9M14_15255, SOURCE 31 B9O84_06255, B9U29_20160, BBQ66_07980, BEL47_15520, BFE55_17500, SOURCE 32 BFE61_13600, BGP52_15605, BIC00_11775, BIC01_03425, BIC03_12465, SOURCE 33 BIC13_09510, BJP89_14935, BK110_11970, BKM50_13625, BLB03_12065, SOURCE 34 BMG85_01485, BMS46_14205, BMU56_10065, BSC80_16315, BSD55_15985, SOURCE 35 BZ203_13370, BZ210_08250, BZG47_14895, BZN20_13125, BZZ88_21635, SOURCE 36 C4E88_11520, C5U54_24325, C5W43_17645, CA117_14980, CB102_02675, SOURCE 37 CB119_10390, CB161_08930, CB198_19420, CB380_13295, CB383_12585, SOURCE 38 CB416_11695, CB530_12435, CB535_09465, CB570_05200, CB646_09025, SOURCE 39 CB657_11330, CBH20_11220, CBM40_08545, CBM67_14430, CBM76_12750, SOURCE 40 CBN77_20665, CBO42_14460, CBR08_08850, CBU15_19945, CBU32_00760, SOURCE 41 CBZ90_12320, CC339_03310, CC403_05060, CC453_12125, CC594_20855, SOURCE 42 CC652_11600, CC725_10110, CC886_11620, CC918_07450, CC944_09505, SOURCE 43 CC971_10010, CCF93_15515, CCP17_10715, CCW27_14410, CD48_15270, SOURCE 44 CD977_10835, CDJ75_08265, CDQ60_11320, CDT37_13185, CDZ72_16490, SOURCE 45 CE355_08040, CE615_16735, CE70_14835, CE806_10370, CE87_12900, SOURCE 46 CE896_01015, CEC46_09750, CEC56_04870, CED07_06500, CEL48_20705, SOURCE 47 CEL55_09205, CEQ70_15765, CER78_12570, CET98_13495, CEY64_16305, SOURCE 48 CFB16_15760, CFB28_17680, CFE76_19020, CFE79_15610, CFF58_13355, SOURCE 49 CFF59_13510, CFJ48_12690, CGG73_15810, CHN22_08020, CI444_12440, SOURCE 50 CIX60_15545, CJC42_16545, CPR79_14100, CPS79_08255, CPX68_07570, SOURCE 51 CQE35_07160, CQG18_09040, CQO33_12635, CR370_10310, CRB02_10290, SOURCE 52 CSG22_12970, CVR97_09845, D3147_17580, D3174_01810, D3F31_11215, SOURCE 53 D3T68_22780, D3Y48_14800, D4361_11425, D4369_10470, D4380_14255, SOURCE 54 D4387_10710, D4422_10715, D4E62_15595, D4E68_12645, D4E74_04805, SOURCE 55 D4X64_11635, D4X79_12705, D4Y62_12305, D5823_23275, D5949_13360, SOURCE 56 D5B48_08355, D5C67_13450, D5C71_13810, D5N86_08445, D5N95_12575, SOURCE 57 D5O82_10940, D5P17_11555, D5X47_11830, D5X51_21070, D5Y28_05580, SOURCE 58 D6360_11195, D6367_13185, D6371_12525, D6373_13850, D6395_09765, SOURCE 59 D6421_13000, D6422_12760, D6J79_14230, D6K10_23715, D6P67_11555, SOURCE 60 D6Q64_13765, D6S43_13075, D6T00_11290, D6T40_07430, D7F20_11320, SOURCE 61 D7H43_01075, D7N92_12075, D7O44_13065, D8Q90_09500, D8S24_13515, SOURCE 62 D9O84_14155, DD95_02420, DJ388_15095, DJ702_13640, DK061_07980, SOURCE 63 DK631_02345, DK641_19375, DK642_13375, DK689_12355, DK696_07780, SOURCE 64 DK698_07265, DKJ10_12345, DKR95_07440, DKS55_11340, DKU45_11320, SOURCE 65 DKU57_10630, DKU80_05405, DLB14_07805, DLB57_08870, DLB93_12855, SOURCE 66 DLR28_13470, DM322_20130, DM733_21940, DMI89_06860, DMO92_13710, SOURCE 67 DMV40_11670, DMZ93_22620, DN165_13395, DN204_13780, DN359_20245, SOURCE 68 DNB97_22830, DNL62_12910, DNM27_08910, DNM63_11945, DNU59_10640, SOURCE 69 DNV08_13515, DNV12_21330, DNV30_09985, DNY92_08010, DNZ37_12590, SOURCE 70 DO350_10650, DO533_09745, DO585_12725, DO640_13295, DO698_21090, SOURCE 71 DO766_09590, DO828_16445, DO960_04625, DOC60_14865, DOH72_12230, SOURCE 72 DOI32_09640, DOI53_11380, DOI92_10015, DOJ39_13330, DOJ91_15905, SOURCE 73 DOQ54_10850, DOQ88_19075, DOR12_10695, DOV43_19010, DOW25_10390, SOURCE 74 DP680_11760, DPB42_06345, DPB45_09375, DPB48_12795, DPB57_11855, SOURCE 75 DPD91_07890, DPD95_08365, DPD99_18580, DPF41_10345, DPF68_09290, SOURCE 76 DPJ93_06885, DPK32_10835, DPK79_10855, DPL02_08725, DPP13_16840, SOURCE 77 DPP94_12530, DPP97_14020, DPS76_08870, DPT18_10485, DPU20_11590, SOURCE 78 DPY58_18740, DQ848_10815, DQ947_12275, DQ951_12780, DQC39_14690, SOURCE 79 DQC52_17465, DQD03_12025, DQD22_14205, DQE64_12330, DQE65_13455, SOURCE 80 DQK42_17635, DQQ98_14965, DQR10_20350, DQR44_12005, DQR61_11120, SOURCE 81 DQS14_10375, DQY10_09140, DQZ46_08550, DQZ56_12760, DR982_22020, SOURCE 82 DRL45_07940, DRM14_11520, DRM16_14710, DRR75_23095, DRT38_13015, SOURCE 83 DRT61_23690, DRT65_15310, DRV05_08945, DRW84_11665, DRX36_22780, SOURCE 84 DRX66_07345, DS270_18375, DS296_03655, DS451_17430, DS453_12950, SOURCE 85 DS521_10015, DS619_11600, DSF69_12145, DSF94_10460, DSG41_14570, SOURCE 86 DSM38_11155, DSN15_12590, DSR36_10905, DTE73_10415, DTF68_07740, SOURCE 87 DTG22_22525, DTG27_16445, DTW13_10745, DTW14_14950, DTW26_11965, SOURCE 88 DU071_21905, DU223_06195, DU657_07745, DU821_10140, DU879_10520, SOURCE 89 DU924_08500, DUQ28_11140, DUQ56_08490, DUQ92_13185, DUR36_14185, SOURCE 90 DUV75_15260, DUW10_15950, DUW48_09895, DVF14_11920, DVF88_08270, SOURCE 91 DVG01_14360, DVZ53_05935, DWU22_23860, DWU62_21645, DY580_21440, SOURCE 92 DYM27_06865, DYS82_09690, DZG11_20930, E0584_16370, E0595_14185, SOURCE 93 E0600_21890, E0935_14485, E0989_09310, E0M34_15895, E0S07_16310, SOURCE 94 E0U75_13640, E0V94_09045, E1336_08925, E1A11_13485, E1A20_12000, SOURCE 95 E5196_05695, E6W45_14470, EBB93_17635, EBC01_10965, EBD14_12205, SOURCE 96 EBD99_18850, EBK21_14930, EBL31_09840, EBO41_09410, EBP31_06115, SOURCE 97 EC404_15850, EC52_15480, ECA50_20460, ECC89_11785, ED424_08285, SOURCE 98 ED467_11830, EDL18_13765, EEK73_13190, EEQ30_16240, EER35_07340, SOURCE 99 EGL32_12130, EGN81_07495, EGU67_13655, EGU98_14315, EHB09_14460, SOURCE 100 EHB24_11945, EHB55_22345, EHC98_05345, EIE48_10505, EIW53_04795, SOURCE 101 EJI18_11350, EJO08_13340, EJO98_13625, EKA25_12980, EL822_07390, SOURCE 102 ELO47_09560, ELR28_08900, ELS01_12400, EM832_12680, EM840_06380, SOURCE 103 EMN66_07620, EMY79_09360, EO190_08315, EP115_18440, EP446_20135, SOURCE 104 EPB30_13505, EPH81_08120, EQG93_05510, EQG94_13030, ERM04_09810, SOURCE 105 EU306_11875, EU349_11640, EU873_21965, EUB95_05675, EUQ56_12115, SOURCE 106 EUQ65_09175, EUQ74_13570, EUS13_08790, EVT69_22445, EVY71_04215, SOURCE 107 EW905_06135, EWB18_06485, EWE52_05820, EWJ47_09340, EWZ09_13550, SOURCE 108 EXA47_07665, EXB31_05300, EXB41_09095, EYA29_15940, EYJ91_08825, SOURCE 109 F0D96_14965, F2O93_14305, F2P00_11865, F3Q46_16675, F3Q58_07850, SOURCE 110 F3Q59_15070, F3Q88_00720, F3Q97_16025, F3R12_18690, F3R61_10195, SOURCE 111 F3R63_13520, F9G02_06435, F9O44_04025, FE758_13940, FEM52_13990, SOURCE 112 FGZ46_08850, FJM64_14760, FL833_11895, FQC24_10010, FQD13_04095, SOURCE 113 FQX78_02535, GCH31_06840, GCQ81_17295, GCZ80_15980, GEZ01_10265, SOURCE 114 GW08_14750, JO10_24665, KP44_13855, LZ63_14980, NCTC13348_05301, SOURCE 115 NG02_14230, NG06_18895, NG18_08765, NU83_17610, QA89_08030, SOURCE 116 QB40_11485, QD15_11360, R035_06990, RJ78_11590, SAMEA4398682_01637, SOURCE 117 SE14_02481, Y934_23370, YG50_16765, YR17_10960, YT65_22010, SOURCE 118 Z700_22650, Z705_18140, ZB89_19920, ZC54_19680, ZT09_16805, SOURCE 119 ZT28_13365, ZT74_18075, ZT89_18160, ZU86_17815, ZU92_16805, SOURCE 120 ZV06_14780, ZV17_16185, ZV33_17250, ZV34_18355, ZV38_13400, SOURCE 121 ZV58_19590, ZV70_18315, ZV76_14470, ZV78_21800, ZV90_21250, SOURCE 122 ZW74_16110, ZX03_15750, ZY23_11835, ZY27_17660, ZY40_02770, SOURCE 123 ZY51_16230, ZZ18_15945, ZZ43_13745, ZZ77_13130, ZZ79_15595; SOURCE 124 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 125 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RESPONSE REGULATOR, PHOSPHORYLATION, TWO-COMPONENT SYSTEMS, KEYWDS 2 TRANSCRIPTIONAL FACTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HUESA,A.MARINA,P.CASINO REVDAT 3 31-JAN-24 6ZII 1 REMARK REVDAT 2 10-MAR-21 6ZII 1 JRNL REVDAT 1 17-FEB-21 6ZII 0 JRNL AUTH J.HUESA,J.GINER-LAMIA,M.G.PUCCIARELLI,F.PAREDES-MARTINEZ, JRNL AUTH 2 F.G.PORTILLO,A.MARINA,P.CASINO JRNL TITL STRUCTURE-BASED ANALYSES OF SALMONELLA RCSB VARIANTS UNRAVEL JRNL TITL 2 NEW FEATURES OF THE RCS REGULON. JRNL REF NUCLEIC ACIDS RES. V. 49 2357 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33638994 JRNL DOI 10.1093/NAR/GKAB060 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 7078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 422 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.75000 REMARK 3 B22 (A**2) : -1.51000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.397 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.289 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.988 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2161 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2136 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2935 ; 1.206 ; 1.627 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4969 ; 1.164 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 5.776 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;37.599 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;14.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;13.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2338 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 368 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZII COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5O8Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, TRIS-HCL PH 8.5, 0.2M REMARK 280 MGCL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 LYS B 140 REMARK 465 ILE B 141 REMARK 465 SER B 142 REMARK 465 ALA B 143 REMARK 465 LYS A 140 REMARK 465 ILE A 141 REMARK 465 SER A 142 REMARK 465 ALA A 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 2 CG OD1 ND2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 MET A 1 CG SD CE REMARK 470 THR A 55 OG1 CG2 REMARK 470 VAL A 134 CG1 CG2 REMARK 470 SER A 135 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 102 43.49 71.25 REMARK 500 ASN A 90 34.98 -97.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD1 REMARK 620 2 BFD B 56 OD2 80.5 REMARK 620 3 SER B 58 O 82.7 71.0 REMARK 620 4 HOH B 401 O 58.2 72.2 129.6 REMARK 620 5 HOH B 409 O 87.2 154.5 85.3 119.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD1 REMARK 620 2 BFD A 56 OD2 77.2 REMARK 620 3 SER A 58 O 94.2 77.2 REMARK 620 4 HOH A 403 O 76.4 67.7 144.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 DBREF 6ZII B 1 143 UNP C4PCU2 C4PCU2_SALTM 1 143 DBREF 6ZII A 1 143 UNP C4PCU2 C4PCU2_SALTM 1 143 SEQRES 1 B 143 MET ASN ASN MET ASN VAL ILE ILE ALA ASP ASP HIS PRO SEQRES 2 B 143 ILE VAL LEU PHE GLY ILE ARG LYS SER LEU GLU GLN ILE SEQRES 3 B 143 GLU TRP VAL ASN VAL VAL GLY GLU PHE GLU ASP SER THR SEQRES 4 B 143 ALA LEU ILE ASN ASN LEU PRO LYS LEU ASP ALA HIS VAL SEQRES 5 B 143 LEU ILE THR BFD LEU SER MET PRO GLY ASP LYS TYR GLY SEQRES 6 B 143 ASP GLY ILE THR LEU ILE LYS TYR ILE LYS ARG HIS PHE SEQRES 7 B 143 PRO SER LEU SER ILE ILE VAL LEU THR MET ASN ASN ASN SEQRES 8 B 143 PRO ALA ILE LEU SER ALA VAL LEU ASP LEU ASP ILE GLU SEQRES 9 B 143 GLY ILE VAL LEU LYS GLN GLY ALA PRO THR ASP LEU PRO SEQRES 10 B 143 LYS ALA LEU ALA ALA LEU GLN LYS GLY LYS LYS PHE THR SEQRES 11 B 143 PRO GLU SER VAL SER ARG LEU LEU GLU LYS ILE SER ALA SEQRES 1 A 143 MET ASN ASN MET ASN VAL ILE ILE ALA ASP ASP HIS PRO SEQRES 2 A 143 ILE VAL LEU PHE GLY ILE ARG LYS SER LEU GLU GLN ILE SEQRES 3 A 143 GLU TRP VAL ASN VAL VAL GLY GLU PHE GLU ASP SER THR SEQRES 4 A 143 ALA LEU ILE ASN ASN LEU PRO LYS LEU ASP ALA HIS VAL SEQRES 5 A 143 LEU ILE THR BFD LEU SER MET PRO GLY ASP LYS TYR GLY SEQRES 6 A 143 ASP GLY ILE THR LEU ILE LYS TYR ILE LYS ARG HIS PHE SEQRES 7 A 143 PRO SER LEU SER ILE ILE VAL LEU THR MET ASN ASN ASN SEQRES 8 A 143 PRO ALA ILE LEU SER ALA VAL LEU ASP LEU ASP ILE GLU SEQRES 9 A 143 GLY ILE VAL LEU LYS GLN GLY ALA PRO THR ASP LEU PRO SEQRES 10 A 143 LYS ALA LEU ALA ALA LEU GLN LYS GLY LYS LYS PHE THR SEQRES 11 A 143 PRO GLU SER VAL SER ARG LEU LEU GLU LYS ILE SER ALA MODRES 6ZII BFD B 56 ASP MODIFIED RESIDUE MODRES 6ZII BFD A 56 ASP MODIFIED RESIDUE HET BFD B 56 12 HET BFD A 56 12 HET MG B 301 1 HET MG A 301 1 HETNAM BFD ASPARTATE BERYLLIUM TRIFLUORIDE HETNAM MG MAGNESIUM ION FORMUL 1 BFD 2(C4 H6 BE F3 N O4 2-) FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *42(H2 O) HELIX 1 AA1 HIS B 12 GLN B 25 1 14 HELIX 2 AA2 ASP B 37 LEU B 45 1 9 HELIX 3 AA3 GLY B 67 PHE B 78 1 12 HELIX 4 AA4 ASN B 91 ASP B 100 1 10 HELIX 5 AA5 THR B 114 LYS B 125 1 12 HELIX 6 AA6 PRO B 131 LEU B 138 1 8 HELIX 7 AA7 HIS A 12 GLU A 24 1 13 HELIX 8 AA8 ASP A 37 ASP A 49 1 13 HELIX 9 AA9 ASP A 66 PHE A 78 1 13 HELIX 10 AB1 ASN A 91 ASP A 100 1 10 HELIX 11 AB2 THR A 114 LYS A 125 1 12 HELIX 12 AB3 SER A 133 GLU A 139 1 7 SHEET 1 AA1 5 VAL B 29 PHE B 35 0 SHEET 2 AA1 5 MET B 4 ALA B 9 1 N VAL B 6 O VAL B 32 SHEET 3 AA1 5 VAL B 52 THR B 55 1 O ILE B 54 N ILE B 7 SHEET 4 AA1 5 SER B 82 THR B 87 1 O LEU B 86 N THR B 55 SHEET 5 AA1 5 GLY B 105 LEU B 108 1 O VAL B 107 N VAL B 85 SHEET 1 AA2 5 VAL A 29 PHE A 35 0 SHEET 2 AA2 5 MET A 4 ALA A 9 1 N VAL A 6 O ASN A 30 SHEET 3 AA2 5 VAL A 52 THR A 55 1 O ILE A 54 N ILE A 7 SHEET 4 AA2 5 SER A 82 THR A 87 1 O ILE A 84 N LEU A 53 SHEET 5 AA2 5 GLY A 105 LEU A 108 1 O VAL A 107 N VAL A 85 LINK C THR B 55 N BFD B 56 1555 1555 1.33 LINK C BFD B 56 N LEU B 57 1555 1555 1.33 LINK C THR A 55 N BFD A 56 1555 1555 1.33 LINK C BFD A 56 N LEU A 57 1555 1555 1.33 LINK OD1 ASP B 11 MG MG B 301 1555 1555 2.22 LINK OD2 BFD B 56 MG MG B 301 1555 1555 2.23 LINK O SER B 58 MG MG B 301 1555 1555 2.44 LINK MG MG B 301 O HOH B 401 1555 1555 2.31 LINK MG MG B 301 O HOH B 409 1555 1555 1.95 LINK OD1 ASP A 11 MG MG A 301 1555 1555 2.23 LINK OD2 BFD A 56 MG MG A 301 1555 1555 2.28 LINK O SER A 58 MG MG A 301 1555 1555 2.22 LINK MG MG A 301 O HOH A 403 1555 1555 2.10 SITE 1 AC1 5 ASP B 11 BFD B 56 SER B 58 HOH B 401 SITE 2 AC1 5 HOH B 409 SITE 1 AC2 4 ASP A 11 BFD A 56 SER A 58 HOH A 403 CRYST1 38.144 64.400 47.131 90.00 100.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026216 0.000000 0.004689 0.00000 SCALE2 0.000000 0.015528 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021554 0.00000