HEADER HYDROLASE 26-JUN-20 6ZIO
TITLE CRYSTAL STRUCTURE OF NRAS (C118S) IN COMPLEX WITH GDP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GTPASE NRAS;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: TRANSFORMING PROTEIN N-RAS;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NRAS, HRAS1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS GTPASE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.KESSLER,G.FISCHER,J.BOETTCHER
REVDAT 3 31-JAN-24 6ZIO 1 REMARK
REVDAT 2 25-NOV-20 6ZIO 1 JRNL
REVDAT 1 19-AUG-20 6ZIO 0
JRNL AUTH D.KESSLER,A.BERGNER,J.BOTTCHER,G.FISCHER,S.DOBEL,M.HINKEL,
JRNL AUTH 2 B.MULLAUER,A.WEISS-PUXBAUM,D.B.MCCONNELL
JRNL TITL DRUGGING ALL RAS ISOFORMS WITH ONE POCKET.
JRNL REF FUTURE MED CHEM V. 12 1911 2020
JRNL REFN ISSN 1756-8927
JRNL PMID 32779487
JRNL DOI 10.4155/FMC-2020-0221
REMARK 2
REMARK 2 RESOLUTION. 1.55 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.7
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.19
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 64.0
REMARK 3 NUMBER OF REFLECTIONS : 28360
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.239
REMARK 3 R VALUE (WORKING SET) : 0.237
REMARK 3 FREE R VALUE : 0.278
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.650
REMARK 3 FREE R VALUE TEST SET COUNT : 1320
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.61
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL
REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 477
REMARK 3 BIN R VALUE (WORKING SET) : 0.1975
REMARK 3 BIN FREE R VALUE : 0.2422
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.10
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2649
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 59
REMARK 3 SOLVENT ATOMS : 254
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 9.71
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.55
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.20850
REMARK 3 B22 (A**2) : 0.22140
REMARK 3 B33 (A**2) : -0.42990
REMARK 3 B12 (A**2) : 0.35980
REMARK 3 B13 (A**2) : -0.31680
REMARK 3 B23 (A**2) : 0.64960
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.310
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.184
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.162
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.181
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.162
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.875
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.847
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2764 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 3751 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 983 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 498 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2764 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 374 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3497 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 0.95
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.58
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.25
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -13.4825 24.5954 -4.4737
REMARK 3 T TENSOR
REMARK 3 T11: -0.0694 T22: -0.1717
REMARK 3 T33: -0.0621 T12: -0.0059
REMARK 3 T13: -0.0109 T23: 0.0354
REMARK 3 L TENSOR
REMARK 3 L11: 1.1920 L22: 0.7606
REMARK 3 L33: 1.2574 L12: -0.0254
REMARK 3 L13: -0.2436 L23: 0.3773
REMARK 3 S TENSOR
REMARK 3 S11: 0.0381 S12: 0.0523 S13: 0.0450
REMARK 3 S21: -0.1088 S22: -0.0632 S23: -0.0862
REMARK 3 S31: 0.0174 S32: -0.0331 S33: 0.0252
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -7.7498 34.7294 -36.0736
REMARK 3 T TENSOR
REMARK 3 T11: -0.1026 T22: -0.0687
REMARK 3 T33: -0.0638 T12: 0.0177
REMARK 3 T13: -0.0050 T23: 0.0053
REMARK 3 L TENSOR
REMARK 3 L11: 1.0936 L22: 0.8863
REMARK 3 L33: 0.9480 L12: 0.0881
REMARK 3 L13: -0.1057 L23: -0.2876
REMARK 3 S TENSOR
REMARK 3 S11: -0.0631 S12: 0.0195 S13: -0.0210
REMARK 3 S21: 0.1004 S22: 0.0284 S23: 0.0500
REMARK 3 S31: -0.0130 S32: 0.0221 S33: 0.0347
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6ZIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-20.
REMARK 100 THE DEPOSITION ID IS D_1292109633.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 11-OCT-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : STARANISO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28360
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550
REMARK 200 RESOLUTION RANGE LOW (A) : 19.190
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 83.5
REMARK 200 DATA REDUNDANCY : 2.800
REMARK 200 R MERGE (I) : 0.10000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.45100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 3CON
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 39.41
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 2000, 100MM HEPES PH=7.5,
REMARK 280 VAPOR DIFFUSION, TEMPERATURE 278K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16100 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 LEU A 171
REMARK 465 ASN A 172
REMARK 465 LYS B 170
REMARK 465 LEU B 171
REMARK 465 ASN B 172
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 3 CG CD OE1 OE2
REMARK 470 LYS A 5 CE NZ
REMARK 470 ARG A 41 CD NE CZ NH1 NH2
REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2
REMARK 470 ASP A 108 CG OD1 OD2
REMARK 470 LYS A 128 NZ
REMARK 470 GLU A 143 CG CD OE1 OE2
REMARK 470 GLN A 165 CG CD OE1 NE2
REMARK 470 GLU B 3 CG CD OE1 OE2
REMARK 470 LYS B 5 CE NZ
REMARK 470 ARG B 41 CD NE CZ NH1 NH2
REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2
REMARK 470 ASP B 108 CG OD1 OD2
REMARK 470 LYS B 128 NZ
REMARK 470 GLU B 143 CG CD OE1 OE2
REMARK 470 GLN B 165 CG CD OE1 NE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 33 111.78 -35.47
REMARK 500 LYS A 117 33.11 74.58
REMARK 500 ARG A 149 -0.82 82.23
REMARK 500 ASP B 33 112.15 -36.32
REMARK 500 LYS B 117 36.70 76.41
REMARK 500 ARG B 149 -1.55 83.24
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 437 DISTANCE = 5.82 ANGSTROMS
REMARK 525 HOH A 438 DISTANCE = 6.75 ANGSTROMS
REMARK 525 HOH B 416 DISTANCE = 5.83 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 17 OG
REMARK 620 2 GDP A 202 O2B 89.3
REMARK 620 3 HOH A 302 O 88.5 88.0
REMARK 620 4 HOH A 305 O 83.5 100.4 168.2
REMARK 620 5 HOH A 309 O 91.5 174.0 86.0 85.6
REMARK 620 6 HOH A 369 O 166.1 92.5 105.3 82.6 88.1
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER B 17 OG
REMARK 620 2 GDP B 203 O1B 82.2
REMARK 620 3 HOH B 301 O 92.9 85.9
REMARK 620 4 HOH B 312 O 102.6 172.4 87.9
REMARK 620 5 HOH B 314 O 173.3 94.1 92.3 81.7
REMARK 620 6 HOH B 315 O 81.3 95.1 174.0 91.4 93.5
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 202 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ALA B 18 O
REMARK 620 2 HIS B 27 O 116.6
REMARK 620 N 1
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 203
DBREF 6ZIO A 1 172 UNP P01111 RASN_HUMAN 1 172
DBREF 6ZIO B 1 172 UNP P01111 RASN_HUMAN 1 172
SEQADV 6ZIO GLY A 0 UNP P01111 EXPRESSION TAG
SEQADV 6ZIO SER A 118 UNP P01111 CYS 118 ENGINEERED MUTATION
SEQADV 6ZIO GLY B 0 UNP P01111 EXPRESSION TAG
SEQADV 6ZIO SER B 118 UNP P01111 CYS 118 ENGINEERED MUTATION
SEQRES 1 A 173 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY
SEQRES 2 A 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 A 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 A 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS
SEQRES 5 A 173 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 A 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 A 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE
SEQRES 8 A 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 A 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 A 173 LYS SER ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN
SEQRES 11 A 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE
SEQRES 12 A 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA
SEQRES 13 A 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET
SEQRES 14 A 173 LYS LYS LEU ASN
SEQRES 1 B 173 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY
SEQRES 2 B 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 B 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 B 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS
SEQRES 5 B 173 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 B 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 B 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE
SEQRES 8 B 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 B 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 B 173 LYS SER ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN
SEQRES 11 B 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE
SEQRES 12 B 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA
SEQRES 13 B 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET
SEQRES 14 B 173 LYS LYS LEU ASN
HET MG A 201 1
HET GDP A 202 28
HET MG B 201 1
HET MG B 202 1
HET GDP B 203 28
HETNAM MG MAGNESIUM ION
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
FORMUL 3 MG 3(MG 2+)
FORMUL 4 GDP 2(C10 H15 N5 O11 P2)
FORMUL 8 HOH *254(H2 O)
HELIX 1 AA1 GLY A 15 ASN A 26 1 12
HELIX 2 AA2 SER A 65 GLY A 75 1 11
HELIX 3 AA3 ASN A 86 ASP A 105 1 20
HELIX 4 AA4 ASP A 126 GLY A 138 1 13
HELIX 5 AA5 GLY A 151 ARG A 167 1 17
HELIX 6 AA6 GLY B 15 ASN B 26 1 12
HELIX 7 AA7 SER B 65 GLY B 75 1 11
HELIX 8 AA8 ASN B 86 ASP B 105 1 20
HELIX 9 AA9 ASP B 126 GLY B 138 1 13
HELIX 10 AB1 GLY B 151 ARG B 167 1 17
SHEET 1 AA1 6 ASP A 38 ILE A 46 0
SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40
SHEET 3 AA1 6 THR A 2 VAL A 9 1 N VAL A 8 O LEU A 56
SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9
SHEET 5 AA1 6 MET A 111 ASN A 116 1 O VAL A 114 N CYS A 80
SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113
SHEET 1 AA2 6 ASP B 38 ILE B 46 0
SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40
SHEET 3 AA2 6 THR B 2 VAL B 9 1 N VAL B 8 O LEU B 56
SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9
SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 114 N CYS B 80
SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113
LINK OG SER A 17 MG MG A 201 1555 1555 2.15
LINK MG MG A 201 O2B GDP A 202 1555 1555 2.24
LINK MG MG A 201 O HOH A 302 1555 1555 2.23
LINK MG MG A 201 O HOH A 305 1555 1555 2.09
LINK MG MG A 201 O HOH A 309 1555 1555 2.23
LINK MG MG A 201 O HOH A 369 1555 1555 2.05
LINK OG SER B 17 MG MG B 201 1555 1555 2.12
LINK O ALA B 18 MG MG B 202 1555 1555 2.57
LINK O HIS B 27 MG MG B 202 1555 1555 2.79
LINK MG MG B 201 O1B GDP B 203 1555 1555 2.41
LINK MG MG B 201 O HOH B 301 1555 1555 2.13
LINK MG MG B 201 O HOH B 312 1555 1555 2.02
LINK MG MG B 201 O HOH B 314 1555 1555 2.08
LINK MG MG B 201 O HOH B 315 1555 1555 2.03
SITE 1 AC1 6 SER A 17 GDP A 202 HOH A 302 HOH A 305
SITE 2 AC1 6 HOH A 309 HOH A 369
SITE 1 AC2 24 GLY A 13 VAL A 14 GLY A 15 LYS A 16
SITE 2 AC2 24 SER A 17 ALA A 18 PHE A 28 VAL A 29
SITE 3 AC2 24 ASP A 30 ASN A 116 LYS A 117 ASP A 119
SITE 4 AC2 24 LEU A 120 SER A 145 ALA A 146 LYS A 147
SITE 5 AC2 24 MG A 201 HOH A 302 HOH A 327 HOH A 339
SITE 6 AC2 24 HOH A 352 HOH A 369 HOH A 373 HOH A 401
SITE 1 AC3 6 SER B 17 GDP B 203 HOH B 301 HOH B 312
SITE 2 AC3 6 HOH B 314 HOH B 315
SITE 1 AC4 5 ALA B 18 GLN B 22 HIS B 27 PHE B 28
SITE 2 AC4 5 VAL B 29
SITE 1 AC5 24 GLY B 13 VAL B 14 GLY B 15 LYS B 16
SITE 2 AC5 24 SER B 17 ALA B 18 PHE B 28 VAL B 29
SITE 3 AC5 24 ASP B 30 ASN B 116 LYS B 117 ASP B 119
SITE 4 AC5 24 LEU B 120 SER B 145 ALA B 146 LYS B 147
SITE 5 AC5 24 MG B 201 HOH B 301 HOH B 314 HOH B 338
SITE 6 AC5 24 HOH B 359 HOH B 364 HOH B 370 HOH B 375
CRYST1 37.174 37.161 66.245 78.83 75.24 64.70 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.026901 -0.012716 -0.005881 0.00000
SCALE2 0.000000 0.029765 -0.002902 0.00000
SCALE3 0.000000 0.000000 0.015685 0.00000