HEADER HYDROLASE 26-JUN-20 6ZIR
TITLE CRYSTAL STRUCTURE OF NRAS (C118S) IN COMPLEX WITH GDP AND COMPOUND 18
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GTPASE NRAS;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: TRANSFORMING PROTEIN N-RAS;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NRAS, HRAS1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS GTPASE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.KESSLER,G.FISCHER,J.BOETTCHER
REVDAT 3 31-JAN-24 6ZIR 1 REMARK
REVDAT 2 25-NOV-20 6ZIR 1 JRNL
REVDAT 1 19-AUG-20 6ZIR 0
JRNL AUTH D.KESSLER,A.BERGNER,J.BOTTCHER,G.FISCHER,S.DOBEL,M.HINKEL,
JRNL AUTH 2 B.MULLAUER,A.WEISS-PUXBAUM,D.B.MCCONNELL
JRNL TITL DRUGGING ALL RAS ISOFORMS WITH ONE POCKET.
JRNL REF FUTURE MED CHEM V. 12 1911 2020
JRNL REFN ISSN 1756-8927
JRNL PMID 32779487
JRNL DOI 10.4155/FMC-2020-0221
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.7
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 78.2
REMARK 3 NUMBER OF REFLECTIONS : 21123
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.189
REMARK 3 R VALUE (WORKING SET) : 0.187
REMARK 3 FREE R VALUE : 0.215
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060
REMARK 3 FREE R VALUE TEST SET COUNT : 1068
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.99
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL
REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 448
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : 0.2481
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.29
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1295
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 78
REMARK 3 SOLVENT ATOMS : 209
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 31.50
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.84
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.44490
REMARK 3 B22 (A**2) : 0.44490
REMARK 3 B33 (A**2) : -0.88980
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.138
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.128
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.127
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.122
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1418 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 1927 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 513 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 250 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1418 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 183 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : 2 ; 1.000 ; HARMONIC
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 1837 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 0.94
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.16
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.98
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 48.3116 -8.5093 14.4866
REMARK 3 T TENSOR
REMARK 3 T11: 0.0163 T22: -0.1415
REMARK 3 T33: -0.1743 T12: 0.0067
REMARK 3 T13: -0.0366 T23: 0.0165
REMARK 3 L TENSOR
REMARK 3 L11: 1.4155 L22: 7.5541
REMARK 3 L33: 1.4169 L12: 0.3100
REMARK 3 L13: 0.0975 L23: 0.6840
REMARK 3 S TENSOR
REMARK 3 S11: -0.0931 S12: 0.0843 S13: -0.0739
REMARK 3 S21: -0.5861 S22: 0.0610 S23: 0.1104
REMARK 3 S31: -0.3629 S32: -0.0234 S33: 0.0321
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6ZIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-20.
REMARK 100 THE DEPOSITION ID IS D_1292109637.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 11-DEC-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : SEALED TUBE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : STARANISO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21123
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 51.903
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 85.9
REMARK 200 DATA REDUNDANCY : 4.200
REMARK 200 R MERGE (I) : 0.07700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 1.17300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 6ZIO
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 71.68
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 3.7M SODIUM FORMATE, 2% PEG 3000,
REMARK 280 100MM BICINE PH=8, VAPOR DIFFUSION, TEMPERATURE 278K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z
REMARK 290 3555 -X+Y,-X,Z
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z
REMARK 290 6555 -X,-X+Y,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 8000 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 414 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 490 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 493 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 GLN A 61
REMARK 465 GLU A 62
REMARK 465 GLU A 63
REMARK 465 TYR A 64
REMARK 465 SER A 65
REMARK 465 ALA A 66
REMARK 465 LYS A 170
REMARK 465 LEU A 171
REMARK 465 ASN A 172
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 31 87.51 -153.21
REMARK 500 ARG A 68 142.57 -33.50
REMARK 500 ARG A 149 -7.10 84.75
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 499 DISTANCE = 5.96 ANGSTROMS
REMARK 525 HOH A 500 DISTANCE = 7.36 ANGSTROMS
REMARK 525 HOH A 501 DISTANCE = 7.64 ANGSTROMS
REMARK 525 HOH A 502 DISTANCE = 8.35 ANGSTROMS
REMARK 525 HOH A 503 DISTANCE = 9.09 ANGSTROMS
REMARK 525 HOH A 504 DISTANCE = 9.44 ANGSTROMS
REMARK 525 HOH A 505 DISTANCE = 9.84 ANGSTROMS
REMARK 525 HOH A 506 DISTANCE = 12.39 ANGSTROMS
REMARK 525 HOH A 507 DISTANCE = 14.55 ANGSTROMS
REMARK 525 HOH A 508 DISTANCE = 21.53 ANGSTROMS
REMARK 525 HOH A 509 DISTANCE = 29.79 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 17 OG
REMARK 620 2 GDP A 203 O2B 87.3
REMARK 620 3 HOH A 308 O 84.3 89.3
REMARK 620 4 HOH A 323 O 91.2 178.1 89.2
REMARK 620 5 HOH A 327 O 170.2 97.5 87.2 83.7
REMARK 620 6 HOH A 329 O 87.0 95.3 170.0 85.9 101.0
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 202 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 THR A 124 O
REMARK 620 2 HOH A 342 O 121.5
REMARK 620 3 HOH A 490 O 117.5 68.8
REMARK 620 4 HOH A 490 O 117.5 68.8 0.0
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EZZ A 204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EZZ A 205
DBREF 6ZIR A 1 172 UNP P01111 RASN_HUMAN 1 172
SEQADV 6ZIR GLY A 0 UNP P01111 EXPRESSION TAG
SEQADV 6ZIR SER A 118 UNP P01111 CYS 118 ENGINEERED MUTATION
SEQRES 1 A 173 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY
SEQRES 2 A 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 A 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 A 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS
SEQRES 5 A 173 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 A 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 A 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE
SEQRES 8 A 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 A 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 A 173 LYS SER ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN
SEQRES 11 A 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE
SEQRES 12 A 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA
SEQRES 13 A 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET
SEQRES 14 A 173 LYS LYS LEU ASN
HET MG A 201 1
HET MG A 202 1
HET GDP A 203 28
HET EZZ A 204 24
HET EZZ A 205 24
HETNAM MG MAGNESIUM ION
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
HETNAM EZZ (3~{S})-3-[2-[(DIMETHYLAMINO)METHYL]-1~{H}-INDOL-3-YL]-
HETNAM 2 EZZ 5-OXIDANYL-2,3-DIHYDROISOINDOL-1-ONE
FORMUL 2 MG 2(MG 2+)
FORMUL 4 GDP C10 H15 N5 O11 P2
FORMUL 5 EZZ 2(C19 H19 N3 O2)
FORMUL 7 HOH *209(H2 O)
HELIX 1 AA1 GLY A 15 ASN A 26 1 12
HELIX 2 AA2 ARG A 68 GLY A 75 1 8
HELIX 3 AA3 ASN A 86 ASP A 105 1 20
HELIX 4 AA4 ASP A 126 GLY A 138 1 13
HELIX 5 AA5 GLY A 151 LYS A 169 1 19
SHEET 1 AA1 6 ASP A 38 ILE A 46 0
SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42
SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56
SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9
SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82
SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113
LINK OG SER A 17 MG MG A 201 1555 1555 2.14
LINK O THR A 124 MG MG A 202 1555 3655 2.51
LINK MG MG A 201 O2B GDP A 203 1555 1555 2.09
LINK MG MG A 201 O HOH A 308 1555 1555 2.02
LINK MG MG A 201 O HOH A 323 1555 1555 2.22
LINK MG MG A 201 O HOH A 327 1555 1555 1.95
LINK MG MG A 201 O HOH A 329 1555 1555 2.02
LINK MG MG A 202 O HOH A 342 1555 3655 2.60
LINK MG MG A 202 O HOH A 490 1555 1555 2.65
LINK MG MG A 202 O HOH A 490 1555 2545 2.65
SITE 1 AC1 6 SER A 17 GDP A 203 HOH A 308 HOH A 323
SITE 2 AC1 6 HOH A 327 HOH A 329
SITE 1 AC2 4 THR A 124 GLN A 129 HOH A 342 HOH A 490
SITE 1 AC3 25 GLY A 13 VAL A 14 GLY A 15 LYS A 16
SITE 2 AC3 25 SER A 17 ALA A 18 PHE A 28 VAL A 29
SITE 3 AC3 25 ASP A 30 ASN A 116 LYS A 117 ASP A 119
SITE 4 AC3 25 LEU A 120 SER A 145 ALA A 146 LYS A 147
SITE 5 AC3 25 MG A 201 HOH A 308 HOH A 327 HOH A 329
SITE 6 AC3 25 HOH A 346 HOH A 361 HOH A 392 HOH A 398
SITE 7 AC3 25 HOH A 403
SITE 1 AC4 12 TYR A 4 ASP A 47 GLY A 48 GLU A 49
SITE 2 AC4 12 PRO A 140 PHE A 141 ILE A 142 THR A 158
SITE 3 AC4 12 ARG A 164 HOH A 344 HOH A 367 HOH A 401
SITE 1 AC5 12 LEU A 6 VAL A 7 GLU A 37 SER A 39
SITE 2 AC5 12 ASP A 54 LEU A 56 GLN A 70 TYR A 71
SITE 3 AC5 12 THR A 74 GLY A 75 HOH A 304 HOH A 397
CRYST1 103.806 103.806 54.775 90.00 90.00 120.00 P 3 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009633 0.005562 0.000000 0.00000
SCALE2 0.000000 0.011124 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018257 0.00000