HEADER DNA BINDING PROTEIN 26-JUN-20 6ZIX TITLE STRUCTURE OF RCSB FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM BOUND TITLE 2 TO PROMOTER P1FLHDC IN THE PRESENCE OF PHOSPHOMIMETIC BEF3- COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN RCSB; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: P1FLHDC PROMOTER SEQUENCE OF 23 BP; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: A DOUBLE-STRANDED DNA CHAIN E: CGAATTAGGAAAAATCTTAGGCG COMPND 10 CHAIN F: GCTTAATCCTTTTTAGAATCCGC; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: P1FLHDC PROMOTER SEQUENCE OF 23 BP; COMPND 13 CHAIN: F; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: A DOUBLE-STRANDED DNA CHAIN E: CGAATTAGGAAAAATCTTAGGCG COMPND 16 CHAIN F: GCTTAATCCTTTTTAGAATCCGC SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: RCSB, STM2270; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 10 TYPHIMURIUM; SOURCE 11 ORGANISM_TAXID: 90371; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 16 TYPHIMURIUM; SOURCE 17 ORGANISM_TAXID: 90371; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RESPONSE REGULATOR, PHOSPHORYLATION, TWO-COMPONENT SYSTEMS, KEYWDS 2 TRANSCRIPTIONAL FACTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.HUESA,A.MARINA,P.CASINO REVDAT 4 31-JAN-24 6ZIX 1 REMARK REVDAT 3 07-DEC-22 6ZIX 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 HET HETNAM FORMUL SITE REVDAT 3 3 1 ATOM REVDAT 2 10-MAR-21 6ZIX 1 JRNL REVDAT 1 17-FEB-21 6ZIX 0 JRNL AUTH J.HUESA,J.GINER-LAMIA,M.G.PUCCIARELLI,F.PAREDES-MARTINEZ, JRNL AUTH 2 F.G.PORTILLO,A.MARINA,P.CASINO JRNL TITL STRUCTURE-BASED ANALYSES OF SALMONELLA RCSB VARIANTS UNRAVEL JRNL TITL 2 NEW FEATURES OF THE RCS REGULON. JRNL REF NUCLEIC ACIDS RES. V. 49 2357 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33638994 JRNL DOI 10.1093/NAR/GKAB060 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13780 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 694 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1030 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.5120 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.5510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2834 REMARK 3 NUCLEIC ACID ATOMS : 902 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 169.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.12000 REMARK 3 B22 (A**2) : -14.12000 REMARK 3 B33 (A**2) : 45.79000 REMARK 3 B12 (A**2) : -7.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.494 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.917 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 77.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3887 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3309 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5489 ; 1.200 ; 1.486 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7676 ; 1.132 ; 1.783 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 6.115 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;40.788 ;26.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;15.773 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;12.768 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3783 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14477 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 74.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5O8Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 1.6% GLYCEROL REMARK 280 AND 0.8M LITHIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 91.61000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.89106 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.04767 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 91.61000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 52.89106 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.04767 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 91.61000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 52.89106 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.04767 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 105.78212 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 56.09533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 105.78212 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 56.09533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 105.78212 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 56.09533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLY B 144 REMARK 465 GLY B 145 REMARK 465 TYR B 146 REMARK 465 LEU B 210 REMARK 465 SER B 211 REMARK 465 PRO B 212 REMARK 465 THR B 213 REMARK 465 ASP B 214 REMARK 465 LYS B 215 REMARK 465 GLU B 216 REMARK 465 MET A 1 REMARK 465 LYS A 127 REMARK 465 LYS A 128 REMARK 465 PHE A 129 REMARK 465 THR A 130 REMARK 465 PRO A 131 REMARK 465 THR A 209 REMARK 465 LEU A 210 REMARK 465 SER A 211 REMARK 465 PRO A 212 REMARK 465 THR A 213 REMARK 465 ASP A 214 REMARK 465 LYS A 215 REMARK 465 GLU A 216 REMARK 465 DC E 1 REMARK 465 DG F 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 2 CG OD1 ND2 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 MET B 4 CG SD CE REMARK 470 PHE B 17 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 19 CG1 CG2 CD1 REMARK 470 ARG B 20 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 LEU B 45 CG CD1 CD2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 PHE B 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 GLN B 124 CG CD OE1 NE2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 PHE B 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 138 CG CD1 CD2 REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 SER B 142 OG REMARK 470 ASP B 148 CG OD1 OD2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 ARG B 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LEU B 167 CG CD1 CD2 REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 SER B 207 OG REMARK 470 VAL B 208 CG1 CG2 REMARK 470 THR B 209 OG1 CG2 REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 MET A 4 CG SD CE REMARK 470 ILE A 14 CG1 CG2 CD1 REMARK 470 PHE A 17 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 ILE A 54 CG1 CG2 CD1 REMARK 470 THR A 55 OG1 CG2 REMARK 470 LEU A 57 CG CD1 CD2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 ILE A 68 CG1 CG2 CD1 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 95 CG CD1 CD2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 SER A 133 OG REMARK 470 VAL A 134 CG1 CG2 REMARK 470 SER A 135 OG REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 137 CG CD1 CD2 REMARK 470 LEU A 138 CG CD1 CD2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 ILE A 141 CG1 CG2 CD1 REMARK 470 SER A 142 OG REMARK 470 TYR A 146 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 148 CG OD1 OD2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 179 CG1 CG2 CD1 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ILE A 199 CG1 CG2 CD1 REMARK 470 TYR A 204 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 207 OG REMARK 470 VAL A 208 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 58 63.82 -100.69 REMARK 500 ASN B 90 -10.36 -140.49 REMARK 500 ASN B 91 102.05 -56.10 REMARK 500 ASP B 102 90.42 65.25 REMARK 500 ASN A 3 109.04 -58.81 REMARK 500 LYS A 63 -57.85 -131.92 REMARK 500 ASP A 102 64.42 72.08 REMARK 500 THR A 114 40.65 -90.23 REMARK 500 LYS A 125 69.02 -105.87 REMARK 500 LYS A 149 55.82 -107.73 REMARK 500 ASN A 176 71.63 68.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 11 OD1 REMARK 620 2 ASP B 56 OD2 93.2 REMARK 620 3 SER B 58 O 68.8 81.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD1 REMARK 620 2 ASP A 11 OD2 47.2 REMARK 620 3 ASP A 56 OD2 109.6 96.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZII RELATED DB: PDB REMARK 900 REC DOMAIN ALONE DBREF 6ZIX B 1 216 UNP P58663 RCSB_SALTY 1 216 DBREF 6ZIX A 1 216 UNP P58663 RCSB_SALTY 1 216 DBREF 6ZIX E 1 23 PDB 6ZIX 6ZIX 1 23 DBREF 6ZIX F 17 39 PDB 6ZIX 6ZIX 17 39 SEQRES 1 B 216 MET ASN ASN MET ASN VAL ILE ILE ALA ASP ASP HIS PRO SEQRES 2 B 216 ILE VAL LEU PHE GLY ILE ARG LYS SER LEU GLU GLN ILE SEQRES 3 B 216 GLU TRP VAL ASN VAL VAL GLY GLU PHE GLU ASP SER THR SEQRES 4 B 216 ALA LEU ILE ASN ASN LEU PRO LYS LEU ASP ALA HIS VAL SEQRES 5 B 216 LEU ILE THR ASP LEU SER MET PRO GLY ASP LYS TYR GLY SEQRES 6 B 216 ASP GLY ILE THR LEU ILE LYS TYR ILE LYS ARG HIS PHE SEQRES 7 B 216 PRO SER LEU SER ILE ILE VAL LEU THR MET ASN ASN ASN SEQRES 8 B 216 PRO ALA ILE LEU SER ALA VAL LEU ASP LEU ASP ILE GLU SEQRES 9 B 216 GLY ILE VAL LEU LYS GLN GLY ALA PRO THR ASP LEU PRO SEQRES 10 B 216 LYS ALA LEU ALA ALA LEU GLN LYS GLY LYS LYS PHE THR SEQRES 11 B 216 PRO GLU SER VAL SER ARG LEU LEU GLU LYS ILE SER ALA SEQRES 12 B 216 GLY GLY TYR GLY ASP LYS ARG LEU SER PRO LYS GLU SER SEQRES 13 B 216 GLU VAL LEU ARG LEU PHE ALA GLU GLY PHE LEU VAL THR SEQRES 14 B 216 GLU ILE ALA LYS LYS LEU ASN ARG SER ILE LYS THR ILE SEQRES 15 B 216 SER SER GLN LYS LYS SER ALA MET MET LYS LEU GLY VAL SEQRES 16 B 216 GLU ASN ASP ILE ALA LEU LEU ASN TYR LEU SER SER VAL SEQRES 17 B 216 THR LEU SER PRO THR ASP LYS GLU SEQRES 1 A 216 MET ASN ASN MET ASN VAL ILE ILE ALA ASP ASP HIS PRO SEQRES 2 A 216 ILE VAL LEU PHE GLY ILE ARG LYS SER LEU GLU GLN ILE SEQRES 3 A 216 GLU TRP VAL ASN VAL VAL GLY GLU PHE GLU ASP SER THR SEQRES 4 A 216 ALA LEU ILE ASN ASN LEU PRO LYS LEU ASP ALA HIS VAL SEQRES 5 A 216 LEU ILE THR ASP LEU SER MET PRO GLY ASP LYS TYR GLY SEQRES 6 A 216 ASP GLY ILE THR LEU ILE LYS TYR ILE LYS ARG HIS PHE SEQRES 7 A 216 PRO SER LEU SER ILE ILE VAL LEU THR MET ASN ASN ASN SEQRES 8 A 216 PRO ALA ILE LEU SER ALA VAL LEU ASP LEU ASP ILE GLU SEQRES 9 A 216 GLY ILE VAL LEU LYS GLN GLY ALA PRO THR ASP LEU PRO SEQRES 10 A 216 LYS ALA LEU ALA ALA LEU GLN LYS GLY LYS LYS PHE THR SEQRES 11 A 216 PRO GLU SER VAL SER ARG LEU LEU GLU LYS ILE SER ALA SEQRES 12 A 216 GLY GLY TYR GLY ASP LYS ARG LEU SER PRO LYS GLU SER SEQRES 13 A 216 GLU VAL LEU ARG LEU PHE ALA GLU GLY PHE LEU VAL THR SEQRES 14 A 216 GLU ILE ALA LYS LYS LEU ASN ARG SER ILE LYS THR ILE SEQRES 15 A 216 SER SER GLN LYS LYS SER ALA MET MET LYS LEU GLY VAL SEQRES 16 A 216 GLU ASN ASP ILE ALA LEU LEU ASN TYR LEU SER SER VAL SEQRES 17 A 216 THR LEU SER PRO THR ASP LYS GLU SEQRES 1 E 23 DC DG DA DA DT DT DA DG DG DA DA DA DA SEQRES 2 E 23 DA DT DC DT DT DA DG DG DC DG SEQRES 1 F 23 DC DG DC DC DT DA DA DG DA DT DT DT DT SEQRES 2 F 23 DT DC DC DT DA DA DT DT DC DG HET MG B 301 1 HET BEF B 302 4 HET MG A 301 1 HET BEF A 302 4 HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 5 MG 2(MG 2+) FORMUL 6 BEF 2(BE F3 1-) FORMUL 9 HOH *5(H2 O) HELIX 1 AA1 HIS B 12 LEU B 23 1 12 HELIX 2 AA2 GLU B 24 ILE B 26 5 3 HELIX 3 AA3 ASP B 37 ASN B 44 1 8 HELIX 4 AA4 GLY B 67 PHE B 78 1 12 HELIX 5 AA5 ASN B 91 ASP B 100 1 10 HELIX 6 AA6 THR B 114 GLN B 124 1 11 HELIX 7 AA7 PRO B 131 ALA B 143 1 13 HELIX 8 AA8 SER B 152 GLY B 165 1 14 HELIX 9 AA9 LEU B 167 LEU B 175 1 9 HELIX 10 AB1 SER B 178 GLY B 194 1 17 HELIX 11 AB2 ASN B 197 VAL B 208 1 12 HELIX 12 AB3 HIS A 12 GLU A 24 1 13 HELIX 13 AB4 ASP A 37 ASN A 44 1 8 HELIX 14 AB5 GLY A 67 PHE A 78 1 12 HELIX 15 AB6 ASN A 91 LEU A 101 1 11 HELIX 16 AB7 ALA A 112 ALA A 119 5 8 HELIX 17 AB8 LEU A 120 LYS A 125 1 6 HELIX 18 AB9 SER A 133 SER A 142 1 10 HELIX 19 AC1 LYS A 154 GLU A 164 1 11 HELIX 20 AC2 LEU A 167 ASN A 176 1 10 HELIX 21 AC3 SER A 178 GLY A 194 1 17 HELIX 22 AC4 ASN A 197 LEU A 205 1 9 SHEET 1 AA1 5 ASN B 30 PHE B 35 0 SHEET 2 AA1 5 ASN B 5 ALA B 9 1 N VAL B 6 O ASN B 30 SHEET 3 AA1 5 VAL B 52 THR B 55 1 O ILE B 54 N ALA B 9 SHEET 4 AA1 5 SER B 82 THR B 87 1 O LEU B 86 N THR B 55 SHEET 5 AA1 5 GLY B 105 LEU B 108 1 O VAL B 107 N VAL B 85 SHEET 1 AA2 5 ASN A 30 PHE A 35 0 SHEET 2 AA2 5 ASN A 5 ALA A 9 1 N VAL A 6 O ASN A 30 SHEET 3 AA2 5 VAL A 52 THR A 55 1 O ILE A 54 N ILE A 7 SHEET 4 AA2 5 SER A 82 THR A 87 1 O ILE A 84 N LEU A 53 SHEET 5 AA2 5 GLY A 105 LEU A 108 1 O VAL A 107 N VAL A 85 LINK OD1 ASP B 11 MG MG B 301 1555 1555 2.66 LINK OD2 ASP B 56 MG MG B 301 1555 1555 2.20 LINK O SER B 58 MG MG B 301 1555 1555 2.32 LINK OD1 ASP A 11 MG MG A 301 1555 1555 2.63 LINK OD2 ASP A 11 MG MG A 301 1555 1555 2.86 LINK OD2 ASP A 56 MG MG A 301 1555 1555 2.30 SITE 1 AC1 5 ASP B 11 HIS B 12 ASP B 56 SER B 58 SITE 2 AC1 5 BEF B 302 SITE 1 AC2 7 ASP B 10 HIS B 12 VAL B 15 ASP B 56 SITE 2 AC2 7 MET B 88 LYS B 109 MG B 301 SITE 1 AC3 6 ASP A 10 ASP A 11 ASP A 56 SER A 58 SITE 2 AC3 6 LYS A 109 BEF A 302 SITE 1 AC4 7 ASP A 11 ASP A 56 SER A 58 THR A 87 SITE 2 AC4 7 MET A 88 LYS A 109 MG A 301 CRYST1 183.220 183.220 84.143 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005458 0.003151 0.000000 0.00000 SCALE2 0.000000 0.006302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011885 0.00000