HEADER HYDROLASE 26-JUN-20 6ZIZ
TITLE CRYSTAL STRUCTURE OF NRAS Q61R IN COMPLEX WITH GTP AND COMPOUND 18
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GTPASE NRAS;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: TRANSFORMING PROTEIN N-RAS;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NRAS, HRAS1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS GTPASE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.KESSLER,G.FISCHER,J.BOETTCHER
REVDAT 3 31-JAN-24 6ZIZ 1 REMARK
REVDAT 2 25-NOV-20 6ZIZ 1 JRNL
REVDAT 1 19-AUG-20 6ZIZ 0
JRNL AUTH D.KESSLER,A.BERGNER,J.BOTTCHER,G.FISCHER,S.DOBEL,M.HINKEL,
JRNL AUTH 2 B.MULLAUER,A.WEISS-PUXBAUM,D.B.MCCONNELL
JRNL TITL DRUGGING ALL RAS ISOFORMS WITH ONE POCKET.
JRNL REF FUTURE MED CHEM V. 12 1911 2020
JRNL REFN ISSN 1756-8927
JRNL PMID 32779487
JRNL DOI 10.4155/FMC-2020-0221
REMARK 2
REMARK 2 RESOLUTION. 1.79 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.7 (3-OCT-2019)
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 62.3
REMARK 3 NUMBER OF REFLECTIONS : 25104
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.208
REMARK 3 R VALUE (WORKING SET) : 0.208
REMARK 3 FREE R VALUE : 0.219
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830
REMARK 3 FREE R VALUE TEST SET COUNT : 1213
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : NULL
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : NULL
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL
REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL
REMARK 3 BIN R VALUE (WORKING SET) : NULL
REMARK 3 BIN FREE R VALUE : NULL
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL
REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2703
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 114
REMARK 3 SOLVENT ATOMS : 295
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 23.22
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.88
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.04000
REMARK 3 B22 (A**2) : 0.45270
REMARK 3 B33 (A**2) : -0.41280
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.29360
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.310
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.234
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.166
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.678
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.162
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 5713 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 10282 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1777 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 927 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2926 ; 10.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 380 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 4522 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.011
REMARK 3 BOND ANGLES (DEGREES) : 1.08
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.45
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.57
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 24.3693 -0.9477 37.3527
REMARK 3 T TENSOR
REMARK 3 T11: 0.0000 T22: 0.0000
REMARK 3 T33: 0.0000 T12: 0.0000
REMARK 3 T13: 0.0000 T23: 0.0000
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 0.0000
REMARK 3 L33: 0.0000 L12: 0.0000
REMARK 3 L13: 0.0000 L23: 0.0000
REMARK 3 S TENSOR
REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000
REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000
REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 35.0948 -10.7854 9.7411
REMARK 3 T TENSOR
REMARK 3 T11: 0.0000 T22: 0.0000
REMARK 3 T33: 0.0000 T12: 0.0000
REMARK 3 T13: 0.0000 T23: 0.0000
REMARK 3 L TENSOR
REMARK 3 L11: 0.0000 L22: 0.0000
REMARK 3 L33: 0.0000 L12: 0.0000
REMARK 3 L13: 0.0000 L23: 0.0000
REMARK 3 S TENSOR
REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000
REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000
REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6ZIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-20.
REMARK 100 THE DEPOSITION ID IS D_1292109642.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 08-NOV-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC, XDS (VERSION JAN 26
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC (VERSION 1.1.7),
REMARK 200 STARANISO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25105
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.785
REMARK 200 RESOLUTION RANGE LOW (A) : 54.950
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6
REMARK 200 DATA REDUNDANCY : 5.000
REMARK 200 R MERGE (I) : 0.17100
REMARK 200 R SYM (I) : 0.17100
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99
REMARK 200 COMPLETENESS FOR SHELL (%) : 51.4
REMARK 200 DATA REDUNDANCY IN SHELL : 4.60
REMARK 200 R MERGE FOR SHELL (I) : 0.98800
REMARK 200 R SYM FOR SHELL (I) : 0.98800
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 6ZIO
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.55
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS BUFFER 1 100MM PH=6.6
REMARK 280 MORPHEUS MONOSACHARIDES 14% P550MME_P20K 32%, VAPOR DIFFUSION,
REMARK 280 TEMPERATURE 278K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.91450
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.89500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.91450
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.89500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 LEU A 171
REMARK 465 ASN A 172
REMARK 465 GLY B 0
REMARK 465 LYS B 170
REMARK 465 LEU B 171
REMARK 465 ASN B 172
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O ASP B 154 HG1 THR B 158 1.54
REMARK 500 O ASP A 154 HG1 THR A 158 1.54
REMARK 500 OE1 GLU A 37 H20 EZZ A 203 1.58
REMARK 500 OE1 GLU B 37 H20 EZZ B 203 1.60
REMARK 500 O HOH A 301 O HOH A 382 2.11
REMARK 500 O HOH A 407 O HOH B 374 2.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ILE A 36 -65.37 -95.42
REMARK 500 GLU A 37 120.34 -173.29
REMARK 500 SER A 65 12.98 -69.13
REMARK 500 LYS A 117 38.28 73.77
REMARK 500 ILE B 36 -65.27 -95.00
REMARK 500 GLU B 37 120.34 -173.79
REMARK 500 SER B 65 12.32 -68.62
REMARK 500 LYS B 117 37.69 74.50
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 459 DISTANCE = 6.29 ANGSTROMS
REMARK 525 HOH A 460 DISTANCE = 6.55 ANGSTROMS
REMARK 525 HOH A 461 DISTANCE = 9.48 ANGSTROMS
REMARK 525 HOH A 462 DISTANCE = 11.62 ANGSTROMS
REMARK 525 HOH A 463 DISTANCE = 12.34 ANGSTROMS
REMARK 525 HOH A 464 DISTANCE = 12.54 ANGSTROMS
REMARK 525 HOH A 465 DISTANCE = 13.49 ANGSTROMS
REMARK 525 HOH B 426 DISTANCE = 6.34 ANGSTROMS
REMARK 525 HOH B 427 DISTANCE = 7.29 ANGSTROMS
REMARK 525 HOH B 428 DISTANCE = 9.41 ANGSTROMS
REMARK 525 HOH B 429 DISTANCE = 10.20 ANGSTROMS
REMARK 525 HOH B 430 DISTANCE = 11.84 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 202 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 17 OG
REMARK 620 2 THR A 35 OG1 80.0
REMARK 620 3 GTP A 201 O1G 166.6 88.1
REMARK 620 4 GTP A 201 O2B 93.5 171.9 97.7
REMARK 620 5 HOH A 320 O 87.4 88.6 86.2 86.2
REMARK 620 6 HOH A 325 O 87.0 92.6 99.8 92.0 173.9
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG B 202 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER B 17 OG
REMARK 620 2 THR B 35 OG1 78.6
REMARK 620 3 GTP B 201 O3G 167.8 89.2
REMARK 620 4 GTP B 201 O1B 94.1 172.1 98.1
REMARK 620 5 HOH B 306 O 88.8 86.8 91.7 90.0
REMARK 620 6 HOH B 317 O 83.5 92.4 96.0 89.8 172.2
REMARK 620 N 1 2 3 4 5
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EZZ A 203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EZZ B 203
DBREF 6ZIZ A 1 172 UNP P01111 RASN_HUMAN 1 172
DBREF 6ZIZ B 1 172 UNP P01111 RASN_HUMAN 1 172
SEQADV 6ZIZ GLY A 0 UNP P01111 EXPRESSION TAG
SEQADV 6ZIZ ARG A 61 UNP P01111 GLN 61 ENGINEERED MUTATION
SEQADV 6ZIZ SER A 118 UNP P01111 CYS 118 CONFLICT
SEQADV 6ZIZ GLY B 0 UNP P01111 EXPRESSION TAG
SEQADV 6ZIZ ARG B 61 UNP P01111 GLN 61 ENGINEERED MUTATION
SEQADV 6ZIZ SER B 118 UNP P01111 CYS 118 CONFLICT
SEQRES 1 A 173 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY
SEQRES 2 A 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 A 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 A 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS
SEQRES 5 A 173 LEU LEU ASP ILE LEU ASP THR ALA GLY ARG GLU GLU TYR
SEQRES 6 A 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 A 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE
SEQRES 8 A 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 A 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 A 173 LYS SER ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN
SEQRES 11 A 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE
SEQRES 12 A 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA
SEQRES 13 A 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET
SEQRES 14 A 173 LYS LYS LEU ASN
SEQRES 1 B 173 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY
SEQRES 2 B 173 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 B 173 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 B 173 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS
SEQRES 5 B 173 LEU LEU ASP ILE LEU ASP THR ALA GLY ARG GLU GLU TYR
SEQRES 6 B 173 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 B 173 PHE LEU CYS VAL PHE ALA ILE ASN ASN SER LYS SER PHE
SEQRES 8 B 173 ALA ASP ILE ASN LEU TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 B 173 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 B 173 LYS SER ASP LEU PRO THR ARG THR VAL ASP THR LYS GLN
SEQRES 11 B 173 ALA HIS GLU LEU ALA LYS SER TYR GLY ILE PRO PHE ILE
SEQRES 12 B 173 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA
SEQRES 13 B 173 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN TYR ARG MET
SEQRES 14 B 173 LYS LYS LEU ASN
HET GTP A 201 32
HET MG A 202 1
HET EZZ A 203 43
HET GTP B 201 32
HET MG B 202 1
HET EZZ B 203 43
HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE
HETNAM MG MAGNESIUM ION
HETNAM EZZ (3~{S})-3-[2-[(DIMETHYLAMINO)METHYL]-1~{H}-INDOL-3-YL]-
HETNAM 2 EZZ 5-OXIDANYL-2,3-DIHYDROISOINDOL-1-ONE
FORMUL 3 GTP 2(C10 H16 N5 O14 P3)
FORMUL 4 MG 2(MG 2+)
FORMUL 5 EZZ 2(C19 H19 N3 O2)
FORMUL 9 HOH *295(H2 O)
HELIX 1 AA1 GLY A 15 ASN A 26 1 12
HELIX 2 AA2 ARG A 61 SER A 65 5 5
HELIX 3 AA3 MET A 67 GLY A 75 1 9
HELIX 4 AA4 ASN A 86 ASP A 105 1 20
HELIX 5 AA5 ASP A 126 GLY A 138 1 13
HELIX 6 AA6 GLY A 151 LYS A 170 1 20
HELIX 7 AA7 GLY B 15 ASN B 26 1 12
HELIX 8 AA8 ARG B 61 SER B 65 5 5
HELIX 9 AA9 MET B 67 GLY B 75 1 9
HELIX 10 AB1 ASN B 86 ASP B 105 1 20
HELIX 11 AB2 ASP B 126 GLY B 138 1 13
HELIX 12 AB3 GLY B 151 LYS B 169 1 19
SHEET 1 AA112 PHE A 141 GLU A 143 0
SHEET 2 AA112 MET A 111 ASN A 116 1 N LEU A 113 O ILE A 142
SHEET 3 AA112 GLY A 77 ALA A 83 1 N CYS A 80 O VAL A 114
SHEET 4 AA112 THR A 2 VAL A 9 1 N VAL A 9 O VAL A 81
SHEET 5 AA112 GLU A 49 THR A 58 1 O LEU A 56 N LEU A 6
SHEET 6 AA112 GLU A 37 ILE A 46 -1 N LYS A 42 O LEU A 53
SHEET 7 AA112 GLU B 37 ILE B 46 -1 O SER B 39 N SER A 39
SHEET 8 AA112 GLU B 49 THR B 58 -1 O LEU B 53 N LYS B 42
SHEET 9 AA112 THR B 2 VAL B 9 1 N LEU B 6 O LEU B 56
SHEET 10 AA112 GLY B 77 ALA B 83 1 O VAL B 81 N VAL B 9
SHEET 11 AA112 MET B 111 ASN B 116 1 O VAL B 114 N CYS B 80
SHEET 12 AA112 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113
LINK OG SER A 17 MG MG A 202 1555 1555 2.12
LINK OG1 THR A 35 MG MG A 202 1555 1555 2.06
LINK O1G GTP A 201 MG MG A 202 1555 1555 2.21
LINK O2B GTP A 201 MG MG A 202 1555 1555 2.13
LINK MG MG A 202 O HOH A 320 1555 1555 2.23
LINK MG MG A 202 O HOH A 325 1555 1555 2.15
LINK OG SER B 17 MG MG B 202 1555 1555 2.18
LINK OG1 THR B 35 MG MG B 202 1555 1555 2.08
LINK O3G GTP B 201 MG MG B 202 1555 1555 2.10
LINK O1B GTP B 201 MG MG B 202 1555 1555 2.18
LINK MG MG B 202 O HOH B 306 1555 1555 2.30
LINK MG MG B 202 O HOH B 317 1555 1555 2.20
SITE 1 AC1 27 GLY A 12 GLY A 13 VAL A 14 GLY A 15
SITE 2 AC1 27 LYS A 16 SER A 17 ALA A 18 PHE A 28
SITE 3 AC1 27 VAL A 29 ASP A 30 TYR A 32 PRO A 34
SITE 4 AC1 27 THR A 35 GLY A 60 ASN A 116 LYS A 117
SITE 5 AC1 27 ASP A 119 LEU A 120 SER A 145 ALA A 146
SITE 6 AC1 27 MG A 202 HOH A 316 HOH A 320 HOH A 325
SITE 7 AC1 27 HOH A 338 HOH A 347 HOH A 380
SITE 1 AC2 5 SER A 17 THR A 35 GTP A 201 HOH A 320
SITE 2 AC2 5 HOH A 325
SITE 1 AC3 9 LYS A 5 VAL A 7 GLU A 37 ASP A 54
SITE 2 AC3 9 LEU A 56 ARG A 73 THR A 74 GLY A 75
SITE 3 AC3 9 HOH A 379
SITE 1 AC4 25 GLY B 12 GLY B 13 VAL B 14 GLY B 15
SITE 2 AC4 25 LYS B 16 SER B 17 ALA B 18 PHE B 28
SITE 3 AC4 25 VAL B 29 ASP B 30 TYR B 32 PRO B 34
SITE 4 AC4 25 THR B 35 GLY B 60 ASN B 116 LYS B 117
SITE 5 AC4 25 ASP B 119 LEU B 120 SER B 145 ALA B 146
SITE 6 AC4 25 MG B 202 HOH B 317 HOH B 320 HOH B 339
SITE 7 AC4 25 HOH B 341
SITE 1 AC5 5 SER B 17 THR B 35 GTP B 201 HOH B 306
SITE 2 AC5 5 HOH B 317
SITE 1 AC6 8 LYS B 5 VAL B 7 GLU B 37 ASP B 54
SITE 2 AC6 8 LEU B 56 TYR B 71 THR B 74 GLY B 75
CRYST1 115.829 45.790 86.045 90.00 111.28 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008633 0.000000 0.003363 0.00000
SCALE2 0.000000 0.021839 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012472 0.00000