HEADER HYDROLASE 29-JUN-20 6ZK5
TITLE PLANT NUCLEOSIDE HYDROLASE - ZMNRH3 ENZYME IN COMPLEX WITH FORODESINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NUCLEOSIDE N-RIBOHYDROLASE 3;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: PYRIMIDINE-SPECIFIC RIBONUCLEOSIDE HYDROLASE RIHB;
COMPND 5 EC: 3.2.2.-;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS;
SOURCE 3 ORGANISM_COMMON: MAIZE;
SOURCE 4 ORGANISM_TAXID: 4577;
SOURCE 5 GENE: 100282231, NRH3, ZEAMMB73_ZM00001D005343;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS PLANT ENZYME, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.MORERA,A.VIGOUROUX,D.KOPECNY
REVDAT 3 31-JAN-24 6ZK5 1 REMARK
REVDAT 2 13-DEC-23 6ZK5 1 JRNL HETSYN
REVDAT 1 12-JAN-22 6ZK5 0
JRNL AUTH E.LUPTAKOVA,A.VIGOUROUX,R.KONCITIKOVA,M.KOPECNA,D.ZALABAK,
JRNL AUTH 2 O.NOVAK,S.SALCEDO SARMIENTO,S.CAVAR ZELJKOVIC,D.J.KOPECNY,
JRNL AUTH 3 K.VON SCHWARTZENBERG,M.STRNAD,L.SPICHAL,N.DE DIEGO,
JRNL AUTH 4 D.KOPECNY,S.MORERA
JRNL TITL PLANT NUCLEOSIDE N-RIBOHYDROLASES: RIBOSIDE BINDING AND ROLE
JRNL TITL 2 IN NITROGEN STORAGE MOBILIZATION.
JRNL REF PLANT J. 2023
JRNL REFN ESSN 1365-313X
JRNL PMID 38044809
JRNL DOI 10.1111/TPJ.16572
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.61
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 42550
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.171
REMARK 3 R VALUE (WORKING SET) : 0.170
REMARK 3 FREE R VALUE : 0.193
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 2128
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 50
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.91
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.03
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 851
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2566
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 808
REMARK 3 BIN R VALUE (WORKING SET) : 0.2543
REMARK 3 BIN FREE R VALUE : 0.2999
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.05
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4812
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 58
REMARK 3 SOLVENT ATOMS : 302
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.43
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.37980
REMARK 3 B22 (A**2) : -2.90430
REMARK 3 B33 (A**2) : 1.52450
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.162
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.129
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.157
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.128
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4985 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 6794 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1651 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 852 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 4985 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 670 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 6221 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.04
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.43
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.04
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -17.6182 -2.5265 -0.3337
REMARK 3 T TENSOR
REMARK 3 T11: -0.0560 T22: -0.0585
REMARK 3 T33: -0.0414 T12: 0.0145
REMARK 3 T13: -0.0031 T23: -0.0172
REMARK 3 L TENSOR
REMARK 3 L11: 0.7493 L22: 0.6074
REMARK 3 L33: 1.2216 L12: -0.0034
REMARK 3 L13: 0.1787 L23: -0.1584
REMARK 3 S TENSOR
REMARK 3 S11: -0.0307 S12: 0.0118 S13: -0.0045
REMARK 3 S21: -0.0043 S22: 0.0141 S23: -0.0014
REMARK 3 S31: -0.0598 S32: -0.1586 S33: 0.0166
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 19.7594 3.1544 -18.0551
REMARK 3 T TENSOR
REMARK 3 T11: -0.0729 T22: -0.0769
REMARK 3 T33: -0.0796 T12: -0.0083
REMARK 3 T13: 0.0067 T23: 0.0113
REMARK 3 L TENSOR
REMARK 3 L11: 2.2339 L22: 0.6410
REMARK 3 L33: 1.0587 L12: 0.4464
REMARK 3 L13: -0.8258 L23: -0.2715
REMARK 3 S TENSOR
REMARK 3 S11: 0.1389 S12: -0.0665 S13: 0.1202
REMARK 3 S21: 0.0685 S22: -0.0744 S23: 0.0672
REMARK 3 S31: -0.0741 S32: 0.0488 S33: -0.0646
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6ZK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-20.
REMARK 100 THE DEPOSITION ID IS D_1292109692.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 27-JUN-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SOLEIL
REMARK 200 BEAMLINE : PROXIMA 1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.978
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42550
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 42.610
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 13.30
REMARK 200 R MERGE (I) : 0.14900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4KPO
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): NULL
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 292K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.27000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.61000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.63500
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.61000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.27000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.63500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 23140 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -14
REMARK 465 GLY A -13
REMARK 465 SER A -12
REMARK 465 SER A -11
REMARK 465 HIS A -10
REMARK 465 HIS A -9
REMARK 465 HIS A -8
REMARK 465 HIS A -7
REMARK 465 HIS A -6
REMARK 465 HIS A -5
REMARK 465 SER A -4
REMARK 465 GLN A -3
REMARK 465 ASP A -2
REMARK 465 PRO A -1
REMARK 465 MET B -14
REMARK 465 GLY B -13
REMARK 465 SER B -12
REMARK 465 SER B -11
REMARK 465 HIS B -10
REMARK 465 HIS B -9
REMARK 465 HIS B -8
REMARK 465 HIS B -7
REMARK 465 HIS B -6
REMARK 465 HIS B -5
REMARK 465 SER B -4
REMARK 465 GLN B -3
REMARK 465 ASP B -2
REMARK 465 PRO B -1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 8 62.71 -116.54
REMARK 500 ASP A 170 82.28 -150.53
REMARK 500 PRO A 286 -6.36 -58.67
REMARK 500 ASP B 8 61.00 -116.46
REMARK 500 ASP B 170 82.75 -151.79
REMARK 500 PRO B 286 -5.85 -58.30
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 401 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 8 OD1
REMARK 620 2 ASP A 13 OD1 84.0
REMARK 620 3 ASP A 13 OD2 71.1 52.4
REMARK 620 4 LEU A 123 O 87.0 144.9 92.6
REMARK 620 5 ASP A 240 OD2 140.8 74.0 69.8 92.7
REMARK 620 6 IMH A 402 O3' 137.3 132.6 145.0 73.2 78.9
REMARK 620 7 IMH A 402 O2' 123.3 73.9 123.7 137.2 81.5 64.1
REMARK 620 8 HOH A 506 O 70.1 121.0 141.1 87.1 149.1 71.4 78.0
REMARK 620 N 1 2 3 4 5 6 7
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA B 402 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP B 8 OD1
REMARK 620 2 ASP B 13 OD1 84.1
REMARK 620 3 ASP B 13 OD2 72.2 51.8
REMARK 620 4 LEU B 123 O 87.2 146.3 94.6
REMARK 620 5 ASP B 240 OD2 140.6 72.6 68.4 94.9
REMARK 620 6 IMH B 401 O3' 139.9 130.0 142.8 74.0 77.3
REMARK 620 7 IMH B 401 O2' 123.3 72.1 120.8 137.7 79.5 63.8
REMARK 620 8 HOH B 527 O 73.8 121.5 145.8 86.7 145.6 70.1 76.5
REMARK 620 N 1 2 3 4 5 6 7
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IMH A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue IMH B 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404
DBREF 6ZK5 A 2 315 UNP B6T563 B6T563_MAIZE 2 315
DBREF 6ZK5 B 2 315 UNP B6T563 B6T563_MAIZE 2 315
SEQADV 6ZK5 MET A -14 UNP B6T563 INITIATING METHIONINE
SEQADV 6ZK5 GLY A -13 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 SER A -12 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 SER A -11 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS A -10 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS A -9 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS A -8 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS A -7 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS A -6 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS A -5 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 SER A -4 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 GLN A -3 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 ASP A -2 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 PRO A -1 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 ASN A 0 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 SER A 1 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 MET B -14 UNP B6T563 INITIATING METHIONINE
SEQADV 6ZK5 GLY B -13 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 SER B -12 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 SER B -11 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS B -10 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS B -9 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS B -8 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS B -7 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS B -6 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 HIS B -5 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 SER B -4 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 GLN B -3 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 ASP B -2 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 PRO B -1 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 ASN B 0 UNP B6T563 EXPRESSION TAG
SEQADV 6ZK5 SER B 1 UNP B6T563 EXPRESSION TAG
SEQRES 1 A 330 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP
SEQRES 2 A 330 PRO ASN SER LYS ILE ILE ILE ASP THR ASP PRO GLY ILE
SEQRES 3 A 330 ASP ASP SER VAL ALA ILE LEU MET ALA PHE GLN MET PRO
SEQRES 4 A 330 GLY VAL GLN VAL LEU GLY LEU THR THR ILE PHE GLY ASN
SEQRES 5 A 330 CYS THR THR GLU HIS ALA THR ARG ASN ALA LEU ILE LEU
SEQRES 6 A 330 CYS GLU LYS ALA SER HIS LEU GLU VAL PRO VAL ALA GLU
SEQRES 7 A 330 GLY SER HIS GLU PRO LEU LYS GLY GLY LYS PRO HIS VAL
SEQRES 8 A 330 ALA ASP PHE VAL HIS GLY PRO ASP GLY LEU GLY ASN VAL
SEQRES 9 A 330 ASP LEU PRO ASP PRO THR ILE LYS LYS VAL GLU GLU SER
SEQRES 10 A 330 ALA THR ASP PHE LEU VAL ASP LYS VAL SER ARG PHE PRO
SEQRES 11 A 330 GLY GLU VAL SER VAL LEU ALA LEU GLY PRO LEU THR ASN
SEQRES 12 A 330 ILE ALA LEU ALA ILE LYS LYS ASP PRO SER PHE VAL LYS
SEQRES 13 A 330 ASN VAL LYS LYS ILE VAL VAL LEU GLY GLY ALA PHE PHE
SEQRES 14 A 330 ALA ALA GLY ASN ALA THR PRO SER ALA GLU ALA ASN ILE
SEQRES 15 A 330 HIS SER ASP PRO GLU ALA ALA ASP MET VAL PHE THR SER
SEQRES 16 A 330 GLY ALA ASP ILE TYR VAL VAL GLY LEU ASN ILE THR THR
SEQRES 17 A 330 GLN VAL SER PHE THR ASP LYS ASP LEU LEU GLU LEU ARG
SEQRES 18 A 330 ASN SER GLN GLY LYS TYR ALA GLN PHE LEU CYS ASP VAL
SEQRES 19 A 330 CYS LYS PHE TYR LEU ASP TRP HIS THR GLU SER TYR GLY
SEQRES 20 A 330 ALA PRO VAL ILE PHE LEU HIS ASP PRO VAL SER PHE ALA
SEQRES 21 A 330 ALA LEU VAL ARG PRO GLU LEU PHE THR PHE LYS LYS GLY
SEQRES 22 A 330 VAL VAL ARG VAL GLU THR GLN GLY ILE CYS VAL GLY HIS
SEQRES 23 A 330 THR SER MET ASP MET LEU LEU LYS LYS TRP ASN SER GLU
SEQRES 24 A 330 ASN PRO TRP THR GLY TYR SER PRO ILE SER VAL ALA TRP
SEQRES 25 A 330 THR VAL ASP VAL PRO LYS VAL VAL ALA PHE VAL LYS GLU
SEQRES 26 A 330 LEU VAL THR LYS PRO
SEQRES 1 B 330 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP
SEQRES 2 B 330 PRO ASN SER LYS ILE ILE ILE ASP THR ASP PRO GLY ILE
SEQRES 3 B 330 ASP ASP SER VAL ALA ILE LEU MET ALA PHE GLN MET PRO
SEQRES 4 B 330 GLY VAL GLN VAL LEU GLY LEU THR THR ILE PHE GLY ASN
SEQRES 5 B 330 CYS THR THR GLU HIS ALA THR ARG ASN ALA LEU ILE LEU
SEQRES 6 B 330 CYS GLU LYS ALA SER HIS LEU GLU VAL PRO VAL ALA GLU
SEQRES 7 B 330 GLY SER HIS GLU PRO LEU LYS GLY GLY LYS PRO HIS VAL
SEQRES 8 B 330 ALA ASP PHE VAL HIS GLY PRO ASP GLY LEU GLY ASN VAL
SEQRES 9 B 330 ASP LEU PRO ASP PRO THR ILE LYS LYS VAL GLU GLU SER
SEQRES 10 B 330 ALA THR ASP PHE LEU VAL ASP LYS VAL SER ARG PHE PRO
SEQRES 11 B 330 GLY GLU VAL SER VAL LEU ALA LEU GLY PRO LEU THR ASN
SEQRES 12 B 330 ILE ALA LEU ALA ILE LYS LYS ASP PRO SER PHE VAL LYS
SEQRES 13 B 330 ASN VAL LYS LYS ILE VAL VAL LEU GLY GLY ALA PHE PHE
SEQRES 14 B 330 ALA ALA GLY ASN ALA THR PRO SER ALA GLU ALA ASN ILE
SEQRES 15 B 330 HIS SER ASP PRO GLU ALA ALA ASP MET VAL PHE THR SER
SEQRES 16 B 330 GLY ALA ASP ILE TYR VAL VAL GLY LEU ASN ILE THR THR
SEQRES 17 B 330 GLN VAL SER PHE THR ASP LYS ASP LEU LEU GLU LEU ARG
SEQRES 18 B 330 ASN SER GLN GLY LYS TYR ALA GLN PHE LEU CYS ASP VAL
SEQRES 19 B 330 CYS LYS PHE TYR LEU ASP TRP HIS THR GLU SER TYR GLY
SEQRES 20 B 330 ALA PRO VAL ILE PHE LEU HIS ASP PRO VAL SER PHE ALA
SEQRES 21 B 330 ALA LEU VAL ARG PRO GLU LEU PHE THR PHE LYS LYS GLY
SEQRES 22 B 330 VAL VAL ARG VAL GLU THR GLN GLY ILE CYS VAL GLY HIS
SEQRES 23 B 330 THR SER MET ASP MET LEU LEU LYS LYS TRP ASN SER GLU
SEQRES 24 B 330 ASN PRO TRP THR GLY TYR SER PRO ILE SER VAL ALA TRP
SEQRES 25 B 330 THR VAL ASP VAL PRO LYS VAL VAL ALA PHE VAL LYS GLU
SEQRES 26 B 330 LEU VAL THR LYS PRO
HET CA A 401 1
HET IMH A 402 19
HET EDO A 403 4
HET IMH B 401 19
HET CA B 402 1
HET PGE B 403 10
HET EDO B 404 4
HETNAM CA CALCIUM ION
HETNAM IMH 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-
HETNAM 2 IMH RIBITOL
HETNAM EDO 1,2-ETHANEDIOL
HETNAM PGE TRIETHYLENE GLYCOL
HETSYN IMH FORODESINE; IMMUCILLIN H
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 CA 2(CA 2+)
FORMUL 4 IMH 2(C11 H14 N4 O4)
FORMUL 5 EDO 2(C2 H6 O2)
FORMUL 8 PGE C6 H14 O4
FORMUL 10 HOH *302(H2 O)
HELIX 1 AA1 GLY A 10 MET A 23 1 14
HELIX 2 AA2 THR A 39 ALA A 54 1 16
HELIX 3 AA3 ALA A 77 GLY A 82 1 6
HELIX 4 AA4 SER A 102 PHE A 114 1 13
HELIX 5 AA5 LEU A 126 ASP A 136 1 11
HELIX 6 AA6 SER A 138 VAL A 143 1 6
HELIX 7 AA7 GLU A 164 ASP A 170 1 7
HELIX 8 AA8 ASP A 170 THR A 179 1 10
HELIX 9 AA9 GLY A 188 THR A 193 1 6
HELIX 10 AB1 ASP A 199 ASN A 207 1 9
HELIX 11 AB2 TYR A 212 GLY A 232 1 21
HELIX 12 AB3 LEU A 238 ARG A 249 1 12
HELIX 13 AB4 ASP A 300 LYS A 314 1 15
HELIX 14 AB5 GLY B 10 MET B 23 1 14
HELIX 15 AB6 THR B 39 ALA B 54 1 16
HELIX 16 AB7 ALA B 77 GLY B 82 1 6
HELIX 17 AB8 SER B 102 PHE B 114 1 13
HELIX 18 AB9 LEU B 126 ASP B 136 1 11
HELIX 19 AC1 SER B 138 VAL B 143 1 6
HELIX 20 AC2 GLU B 164 ASP B 170 1 7
HELIX 21 AC3 ASP B 170 THR B 179 1 10
HELIX 22 AC4 GLY B 188 THR B 193 1 6
HELIX 23 AC5 ASP B 199 ASN B 207 1 9
HELIX 24 AC6 TYR B 212 GLY B 232 1 21
HELIX 25 AC7 LEU B 238 ARG B 249 1 12
HELIX 26 AC8 ASP B 300 LYS B 314 1 15
SHEET 1 AA1 9 VAL A 61 GLU A 63 0
SHEET 2 AA1 9 VAL A 26 THR A 33 1 N LEU A 31 O ALA A 62
SHEET 3 AA1 9 SER A 1 THR A 7 1 N SER A 1 O GLN A 27
SHEET 4 AA1 9 VAL A 118 ALA A 122 1 O LEU A 121 N ILE A 4
SHEET 5 AA1 9 LYS A 145 LEU A 149 1 O VAL A 147 N ALA A 122
SHEET 6 AA1 9 ILE A 184 VAL A 187 1 O VAL A 187 N VAL A 148
SHEET 7 AA1 9 ILE A 293 VAL A 299 1 O ALA A 296 N VAL A 186
SHEET 8 AA1 9 PHE A 253 VAL A 262 -1 N THR A 254 O TRP A 297
SHEET 9 AA1 9 THR A 272 ASP A 275 -1 O ASP A 275 N VAL A 259
SHEET 1 AA2 2 SER A 196 THR A 198 0
SHEET 2 AA2 2 VAL A 235 PHE A 237 -1 O ILE A 236 N PHE A 197
SHEET 1 AA3 8 VAL B 61 GLU B 63 0
SHEET 2 AA3 8 VAL B 26 THR B 33 1 N LEU B 31 O ALA B 62
SHEET 3 AA3 8 SER B 1 THR B 7 1 N SER B 1 O GLN B 27
SHEET 4 AA3 8 VAL B 118 ALA B 122 1 O LEU B 121 N ILE B 4
SHEET 5 AA3 8 LYS B 145 LEU B 149 1 O VAL B 147 N ALA B 122
SHEET 6 AA3 8 ILE B 184 VAL B 187 1 O VAL B 187 N VAL B 148
SHEET 7 AA3 8 ILE B 293 VAL B 299 1 O ALA B 296 N VAL B 186
SHEET 8 AA3 8 PHE B 253 GLY B 258 -1 N THR B 254 O TRP B 297
SHEET 1 AA4 2 SER B 196 THR B 198 0
SHEET 2 AA4 2 VAL B 235 PHE B 237 -1 O ILE B 236 N PHE B 197
SHEET 1 AA5 2 VAL B 260 VAL B 262 0
SHEET 2 AA5 2 THR B 272 MET B 274 -1 O SER B 273 N ARG B 261
LINK OD1 ASP A 8 CA CA A 401 1555 1555 2.51
LINK OD1 ASP A 13 CA CA A 401 1555 1555 2.44
LINK OD2 ASP A 13 CA CA A 401 1555 1555 2.56
LINK O LEU A 123 CA CA A 401 1555 1555 2.36
LINK OD2 ASP A 240 CA CA A 401 1555 1555 2.46
LINK CA CA A 401 O3' IMH A 402 1555 1555 2.41
LINK CA CA A 401 O2' IMH A 402 1555 1555 2.49
LINK CA CA A 401 O HOH A 506 1555 1555 2.65
LINK OD1 ASP B 8 CA CA B 402 1555 1555 2.43
LINK OD1 ASP B 13 CA CA B 402 1555 1555 2.48
LINK OD2 ASP B 13 CA CA B 402 1555 1555 2.56
LINK O LEU B 123 CA CA B 402 1555 1555 2.29
LINK OD2 ASP B 240 CA CA B 402 1555 1555 2.54
LINK O3' IMH B 401 CA CA B 402 1555 1555 2.43
LINK O2' IMH B 401 CA CA B 402 1555 1555 2.53
LINK CA CA B 402 O HOH B 527 1555 1555 2.49
CISPEP 1 PRO A 9 GLY A 10 0 -1.10
CISPEP 2 PRO B 9 GLY B 10 0 -1.14
SITE 1 AC1 7 ASP A 8 ASP A 13 ASN A 37 LEU A 123
SITE 2 AC1 7 ASP A 240 IMH A 402 HOH A 506
SITE 1 AC2 21 ASP A 12 ASP A 13 ASN A 37 HIS A 81
SITE 2 AC2 21 LEU A 123 LEU A 149 ASN A 158 GLU A 164
SITE 3 AC2 21 ALA A 165 ASN A 166 TYR A 223 TRP A 226
SITE 4 AC2 21 HIS A 239 ASP A 240 CA A 401 HOH A 506
SITE 5 AC2 21 HOH A 508 HOH A 521 HOH A 565 HOH A 570
SITE 6 AC2 21 LYS B 279
SITE 1 AC3 5 GLU A 251 LEU A 252 PHE A 253 THR A 298
SITE 2 AC3 5 ASP A 300
SITE 1 AC4 19 ASP B 12 ASP B 13 ASN B 37 HIS B 81
SITE 2 AC4 19 LEU B 123 LEU B 149 ASN B 158 GLU B 164
SITE 3 AC4 19 ALA B 165 ASN B 166 TYR B 223 TRP B 226
SITE 4 AC4 19 HIS B 239 ASP B 240 CA B 402 HOH B 527
SITE 5 AC4 19 HOH B 561 HOH B 587 HOH B 598
SITE 1 AC5 7 ASP B 8 ASP B 13 ASN B 37 LEU B 123
SITE 2 AC5 7 ASP B 240 IMH B 401 HOH B 527
SITE 1 AC6 8 LYS B 144 LYS B 145 VAL B 147 TYR B 185
SITE 2 AC6 8 ALA B 246 LEU B 247 PRO B 250 EDO B 404
SITE 1 AC7 6 SER B 1 LYS B 145 LEU B 247 VAL B 248
SITE 2 AC7 6 PGE B 403 HOH B 533
CRYST1 78.540 79.270 85.220 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012732 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012615 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011734 0.00000