HEADER IMMUNE SYSTEM 30-JUN-20 6ZKX TITLE CRYSTAL STRUCTURE OF INHA:01 TCR IN COMPLEX WITH HLA-E (Y84C) BOUND TO TITLE 2 INHA (53-61 GCG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN E; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MHC CLASS I ANTIGEN E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: ENOYL-ACP REDUCTASE,FAS-II ENOYL-ACP REDUCTASE,NADH- COMPND 14 DEPENDENT 2-TRANS-ENOYL-ACP REDUCTASE; COMPND 15 EC: 1.3.1.9; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: T-CELL RECEPTOR ALPHA CHAIN; COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: T-CELL RECEPTOR BETA CHAIN; COMPND 23 CHAIN: E; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-E, HLA-6.2, HLAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 18 ORGANISM_TAXID: 83332; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T CELL RECEPTOR, TCR, HLA-E, INHA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.SRIKANNATHASAN,V.KARUPPIAH,R.A.ROBINSON REVDAT 4 31-JAN-24 6ZKX 1 REMARK REVDAT 3 20-APR-22 6ZKX 1 JRNL REVDAT 2 16-FEB-22 6ZKX 1 JRNL REVDAT 1 26-JAN-22 6ZKX 0 JRNL AUTH C.BARBER,V.A.DE SOUZA,R.L.PATERSON,M.MARTIN-URDIROZ, JRNL AUTH 2 N.C.MULAKKAL,V.SRIKANNATHASAN,M.CONNOLLY,G.PHILLIPS, JRNL AUTH 3 T.FOONG-LEONG,R.PENGELLY,V.KARUPPIAH,T.GRANT,M.DEMBEK, JRNL AUTH 4 A.VERMA,D.GIBBS-HOWE,T.H.BLICHER,A.KNOX,R.A.ROBINSON, JRNL AUTH 5 D.K.COLE,S.LEONARD JRNL TITL STRUCTURE-GUIDED STABILIZATION OF PATHOGEN-DERIVED JRNL TITL 2 PEPTIDE-HLA-E COMPLEXES USING NON-NATURAL AMINO ACIDS JRNL TITL 3 CONSERVES NATIVE TCR RECOGNITION. JRNL REF EUR.J.IMMUNOL. V. 52 618 2022 JRNL REFN ISSN 0014-2980 JRNL PMID 35108401 JRNL DOI 10.1002/EJI.202149745 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 46900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2369 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3406 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6521 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.50000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : -3.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.274 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.675 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6755 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5912 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9175 ; 1.175 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13769 ; 1.080 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 846 ;17.430 ; 5.266 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 382 ;30.566 ;22.461 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1067 ;13.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;14.806 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 855 ; 0.036 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8469 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1461 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3297 ; 1.323 ; 4.916 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3296 ; 1.323 ; 4.914 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4117 ; 2.312 ; 7.365 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4118 ; 2.311 ; 7.367 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3458 ; 1.205 ; 5.007 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3459 ; 1.205 ; 5.007 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5057 ; 2.040 ; 7.447 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6936 ; 3.847 ;54.049 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6910 ; 3.821 ;53.985 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ZKX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49326 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 79.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5W1W, 5EU6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 25% (W/V) PEG 4000, REMARK 280 15% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.93500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.52000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.52000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.93500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ALA A 41 REMARK 465 MET D 0 REMARK 465 ASN D 207 REMARK 465 SER D 208 REMARK 465 ILE D 209 REMARK 465 ILE D 210 REMARK 465 PRO D 211 REMARK 465 GLU D 212 REMARK 465 ASP D 213 REMARK 465 THR D 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -117.69 55.64 REMARK 500 GLN A 54 43.01 -105.71 REMARK 500 TYR A 123 -66.04 -108.24 REMARK 500 ASP A 162 -83.06 -117.76 REMARK 500 LYS B 50 48.69 -81.06 REMARK 500 TRP B 62 -7.22 84.92 REMARK 500 ASN D 108 175.07 -59.63 REMARK 500 LYS D 166 30.81 72.09 REMARK 500 SER D 168 -19.21 86.31 REMARK 500 ASP D 184 59.77 32.97 REMARK 500 ASP D 198 53.54 -91.07 REMARK 500 ASN D 203 24.72 49.85 REMARK 500 TRP E 236 111.47 -160.29 REMARK 500 ARG E 240 136.48 -179.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 301 DBREF 6ZKX A 1 276 UNP P13747 HLAE_HUMAN 22 297 DBREF 6ZKX B 3 101 UNP P61769 B2MG_HUMAN 21 119 DBREF 6ZKX C 1 12 UNP P9WGR1 INHA_MYCTU 53 64 DBREF 6ZKX D 0 214 PDB 6ZKX 6ZKX 0 214 DBREF 6ZKX E 1 257 PDB 6ZKX 6ZKX 1 257 SEQADV 6ZKX MET A 0 UNP P13747 INITIATING METHIONINE SEQADV 6ZKX CYS A 84 UNP P13747 TYR 105 ENGINEERED MUTATION SEQADV 6ZKX MET B 2 UNP P61769 INITIATING METHIONINE SEQADV 6ZKX GLY C 10 UNP P9WGR1 GLU 62 ENGINEERED MUTATION SEQADV 6ZKX CYS C 11 UNP P9WGR1 LEU 63 ENGINEERED MUTATION SEQADV 6ZKX GLY C 12 UNP P9WGR1 ASP 64 ENGINEERED MUTATION SEQRES 1 A 277 MET GLY SER HIS SER LEU LYS TYR PHE HIS THR SER VAL SEQRES 2 A 277 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE SER VAL SEQRES 3 A 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP ASN SEQRES 4 A 277 ASP ALA ALA SER PRO ARG MET VAL PRO ARG ALA PRO TRP SEQRES 5 A 277 MET GLU GLN GLU GLY SER GLU TYR TRP ASP ARG GLU THR SEQRES 6 A 277 ARG SER ALA ARG ASP THR ALA GLN ILE PHE ARG VAL ASN SEQRES 7 A 277 LEU ARG THR LEU ARG GLY CYS TYR ASN GLN SER GLU ALA SEQRES 8 A 277 GLY SER HIS THR LEU GLN TRP MET HIS GLY CYS GLU LEU SEQRES 9 A 277 GLY PRO ASP GLY ARG PHE LEU ARG GLY TYR GLU GLN PHE SEQRES 10 A 277 ALA TYR ASP GLY LYS ASP TYR LEU THR LEU ASN GLU ASP SEQRES 11 A 277 LEU ARG SER TRP THR ALA VAL ASP THR ALA ALA GLN ILE SEQRES 12 A 277 SER GLU GLN LYS SER ASN ASP ALA SER GLU ALA GLU HIS SEQRES 13 A 277 GLN ARG ALA TYR LEU GLU ASP THR CYS VAL GLU TRP LEU SEQRES 14 A 277 HIS LYS TYR LEU GLU LYS GLY LYS GLU THR LEU LEU HIS SEQRES 15 A 277 LEU GLU PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SEQRES 16 A 277 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 277 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN GLN ASP SEQRES 18 A 277 GLY GLU GLY HIS THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 277 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 277 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 A 277 HIS VAL GLN HIS GLU GLY LEU PRO GLU PRO VAL THR LEU SEQRES 22 A 277 ARG TRP LYS PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 12 ARG LEU PRO ALA LYS ALA PRO LEU LEU GLY CYS GLY SEQRES 1 D 199 MET ALA GLN GLU VAL THR GLN ILE PRO ALA ALA LEU SER SEQRES 2 D 199 VAL PRO GLU GLY GLU ASN LEU VAL LEU ASN CYS SER PHE SEQRES 3 D 199 THR ASP SER ALA ILE TYR ASN LEU GLN TRP PHE ARG GLN SEQRES 4 D 199 ASP PRO GLY LYS GLY LEU THR SER LEU LEU LEU ILE GLN SEQRES 5 D 199 SER SER GLN ARG GLU GLN THR SER GLY ARG LEU ASN ALA SEQRES 6 D 199 SER LEU ASP LYS SER SER GLY ARG SER THR LEU TYR ILE SEQRES 7 D 199 ALA ALA SER GLN PRO GLY ASP SER ALA THR TYR LEU CYS SEQRES 8 D 199 ALA VAL THR ASN GLN ALA GLY THR ALA LEU ILE PHE GLY SEQRES 9 D 199 LYS GLY THR THR LEU SER VAL SER SER ASN ILE GLN ASN SEQRES 10 D 199 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 D 199 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 D 199 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 D 199 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 D 199 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 D 199 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 D 199 PRO GLU ASP THR SEQRES 1 E 245 ASN ALA GLY VAL THR GLN THR PRO LYS PHE GLN VAL LEU SEQRES 2 E 245 LYS THR GLY GLN SER MET THR LEU GLN CYS SER GLN ASP SEQRES 3 E 245 MET ASN HIS GLU TYR MET SER TRP TYR ARG GLN ASP PRO SEQRES 4 E 245 GLY MET GLY LEU ARG LEU ILE HIS TYR SER VAL GLY ALA SEQRES 5 E 245 GLY ILE THR ASP GLN GLY GLU VAL PRO ASN GLY TYR ASN SEQRES 6 E 245 VAL SER ARG SER THR THR GLU ASP PHE PRO LEU ARG LEU SEQRES 7 E 245 LEU SER ALA ALA PRO SER GLN THR SER VAL TYR PHE CYS SEQRES 8 E 245 ALA SER SER TYR SER ILE ARG GLY SER ARG GLY GLU GLN SEQRES 9 E 245 PHE PHE GLY PRO GLY THR ARG LEU THR VAL LEU GLU ASP SEQRES 10 E 245 LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU SEQRES 11 E 245 PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR SEQRES 12 E 245 LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL SEQRES 13 E 245 GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER SEQRES 14 E 245 GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO SEQRES 15 E 245 ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU SEQRES 16 E 245 ARG VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN HIS SEQRES 17 E 245 PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN SEQRES 18 E 245 ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN SEQRES 19 E 245 ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO D 301 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 6 EDO 8(C2 H6 O2) FORMUL 14 HOH *257(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASN A 148 ASP A 162 1 15 HELIX 4 AA4 ASP A 162 GLY A 175 1 14 HELIX 5 AA5 GLY A 175 LEU A 180 1 6 HELIX 6 AA6 GLU A 253 GLN A 255 5 3 HELIX 7 AA7 GLN D 95 SER D 99 5 5 HELIX 8 AA8 ARG D 181 ASP D 184 5 4 HELIX 9 AA9 ALA E 95 THR E 99 5 5 HELIX 10 AB1 ASP E 129 VAL E 133 5 5 HELIX 11 AB2 SER E 144 GLN E 152 1 9 HELIX 12 AB3 ALA E 211 ASP E 216 1 6 SHEET 1 AA1 8 MET A 45 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O VAL A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N LYS A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 LEU A 103 -1 O TRP A 97 N HIS A 9 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O LEU A 124 N PHE A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N THR A 125 SHEET 1 AA2 2 ALA A 140 ILE A 142 0 SHEET 2 AA2 2 LEU C 9 CYS C 11 -1 O GLY C 10 N GLN A 141 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA4 4 LYS A 186 PRO A 193 0 SHEET 2 AA4 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA4 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA4 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA5 3 THR A 214 GLN A 219 0 SHEET 2 AA5 3 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 3 AA5 3 VAL A 270 LEU A 272 -1 O VAL A 270 N VAL A 261 SHEET 1 AA6 4 LYS B 8 SER B 13 0 SHEET 2 AA6 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA6 4 PHE B 64 PHE B 72 -1 O TYR B 68 N CYS B 27 SHEET 4 AA6 4 GLU B 52 HIS B 53 -1 N GLU B 52 O TYR B 69 SHEET 1 AA7 4 LYS B 8 SER B 13 0 SHEET 2 AA7 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA7 4 PHE B 64 PHE B 72 -1 O TYR B 68 N CYS B 27 SHEET 4 AA7 4 SER B 57 PHE B 58 -1 N SER B 57 O TYR B 65 SHEET 1 AA8 4 GLU B 46 ARG B 47 0 SHEET 2 AA8 4 GLU B 38 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 AA8 4 TYR B 80 ASN B 85 -1 O ARG B 83 N ASP B 40 SHEET 4 AA8 4 LYS B 93 LYS B 96 -1 O LYS B 93 N VAL B 84 SHEET 1 AA9 5 VAL D 4 THR D 5 0 SHEET 2 AA9 5 LEU D 19 PHE D 25 -1 O SER D 24 N THR D 5 SHEET 3 AA9 5 ARG D 86 ILE D 91 -1 O SER D 87 N CYS D 23 SHEET 4 AA9 5 LEU D 76 ASP D 81 -1 N ASP D 81 O ARG D 86 SHEET 5 AA9 5 GLU D 65 SER D 68 -1 N SER D 68 O LEU D 76 SHEET 1 AB1 5 ALA D 10 PRO D 14 0 SHEET 2 AB1 5 THR D 122 SER D 127 1 O THR D 123 N LEU D 11 SHEET 3 AB1 5 ALA D 100 THR D 107 -1 N ALA D 100 O LEU D 124 SHEET 4 AB1 5 ASN D 38 GLN D 44 -1 N GLN D 40 O ALA D 105 SHEET 5 AB1 5 LEU D 50 GLN D 57 -1 O LEU D 53 N TRP D 41 SHEET 1 AB2 4 ALA D 10 PRO D 14 0 SHEET 2 AB2 4 THR D 122 SER D 127 1 O THR D 123 N LEU D 11 SHEET 3 AB2 4 ALA D 100 THR D 107 -1 N ALA D 100 O LEU D 124 SHEET 4 AB2 4 LEU D 116 PHE D 118 -1 O ILE D 117 N VAL D 106 SHEET 1 AB3 4 ALA D 136 ARG D 141 0 SHEET 2 AB3 4 SER D 149 THR D 154 -1 O VAL D 150 N LEU D 140 SHEET 3 AB3 4 PHE D 185 SER D 194 -1 O ALA D 192 N CYS D 151 SHEET 4 AB3 4 VAL D 170 ILE D 172 -1 N TYR D 171 O TRP D 193 SHEET 1 AB4 4 ALA D 136 ARG D 141 0 SHEET 2 AB4 4 SER D 149 THR D 154 -1 O VAL D 150 N LEU D 140 SHEET 3 AB4 4 PHE D 185 SER D 194 -1 O ALA D 192 N CYS D 151 SHEET 4 AB4 4 CYS D 176 MET D 180 -1 N MET D 180 O PHE D 185 SHEET 1 AB5 4 VAL E 4 THR E 7 0 SHEET 2 AB5 4 MET E 19 GLN E 25 -1 O SER E 24 N THR E 5 SHEET 3 AB5 4 LEU E 89 LEU E 91 -1 O LEU E 89 N LEU E 21 SHEET 4 AB5 4 TYR E 76 VAL E 78 -1 N ASN E 77 O ARG E 90 SHEET 1 AB6 6 PHE E 10 LYS E 14 0 SHEET 2 AB6 6 THR E 122 LEU E 127 1 O LEU E 127 N LEU E 13 SHEET 3 AB6 6 SER E 100 SER E 107 -1 N TYR E 102 O THR E 122 SHEET 4 AB6 6 TYR E 38 ASP E 45 -1 N TYR E 42 O PHE E 103 SHEET 5 AB6 6 GLY E 49 GLY E 58 -1 O ILE E 53 N TRP E 41 SHEET 6 AB6 6 ILE E 65 GLN E 68 -1 O ASP E 67 N TYR E 55 SHEET 1 AB7 4 PHE E 10 LYS E 14 0 SHEET 2 AB7 4 THR E 122 LEU E 127 1 O LEU E 127 N LEU E 13 SHEET 3 AB7 4 SER E 100 SER E 107 -1 N TYR E 102 O THR E 122 SHEET 4 AB7 4 PHE E 117 PHE E 118 -1 O PHE E 117 N SER E 106 SHEET 1 AB8 4 GLU E 137 PHE E 141 0 SHEET 2 AB8 4 LYS E 153 PHE E 163 -1 O VAL E 157 N PHE E 141 SHEET 3 AB8 4 TYR E 201 SER E 210 -1 O LEU E 207 N LEU E 156 SHEET 4 AB8 4 VAL E 183 THR E 185 -1 N CYS E 184 O ARG E 206 SHEET 1 AB9 4 GLU E 137 PHE E 141 0 SHEET 2 AB9 4 LYS E 153 PHE E 163 -1 O VAL E 157 N PHE E 141 SHEET 3 AB9 4 TYR E 201 SER E 210 -1 O LEU E 207 N LEU E 156 SHEET 4 AB9 4 LEU E 190 LYS E 191 -1 N LEU E 190 O ALA E 202 SHEET 1 AC1 4 LYS E 177 GLU E 178 0 SHEET 2 AC1 4 VAL E 168 VAL E 174 -1 N VAL E 174 O LYS E 177 SHEET 3 AC1 4 HIS E 220 PHE E 227 -1 O GLN E 224 N SER E 171 SHEET 4 AC1 4 GLN E 246 TRP E 253 -1 O GLN E 246 N PHE E 227 SSBOND 1 CYS A 84 CYS C 11 1555 1555 2.04 SSBOND 2 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 3 CYS A 203 CYS A 259 1555 1555 2.02 SSBOND 4 CYS B 27 CYS B 82 1555 1555 2.03 SSBOND 5 CYS D 23 CYS D 104 1555 1555 2.02 SSBOND 6 CYS D 151 CYS D 201 1555 1555 2.04 SSBOND 7 CYS D 176 CYS E 184 1555 1555 2.05 SSBOND 8 CYS E 23 CYS E 104 1555 1555 2.02 SSBOND 9 CYS E 158 CYS E 223 1555 1555 2.02 CISPEP 1 TYR A 209 PRO A 210 0 2.41 CISPEP 2 HIS B 33 PRO B 34 0 2.99 CISPEP 3 ILE D 7 PRO D 8 0 -7.75 CISPEP 4 THR E 7 PRO E 8 0 -8.40 CISPEP 5 TYR E 164 PRO E 165 0 -5.52 SITE 1 AC1 5 TRP A 133 ALA A 140 GLN A 141 ILE A 142 SITE 2 AC1 5 ASP A 149 SITE 1 AC2 2 ARG A 44 MET A 45 SITE 1 AC3 4 LYS A 6 PHE A 8 TYR A 27 ASP A 30 SITE 1 AC4 5 VAL A 12 ARG A 17 SER A 92 HOH A 401 SITE 2 AC4 5 ASP B 36 SITE 1 AC5 9 LEU A 206 ARG A 234 GLN A 242 TYR B 12 SITE 2 AC5 9 SER B 13 HIS B 15 PRO B 16 HOH B 308 SITE 3 AC5 9 HOH B 328 SITE 1 AC6 7 GLN B 10 VAL B 11 VAL B 95 LYS B 96 SITE 2 AC6 7 ASP B 98 MET B 101 HOH B 311 SITE 1 AC7 7 ILE A 23 ARG A 35 ASP A 37 ASP B 55 SITE 2 AC7 7 LEU B 56 HOH B 301 HOH B 305 SITE 1 AC8 6 GLY D 47 HOH D 403 LYS E 9 VAL E 101 SITE 2 AC8 6 PRO E 120 HOH E 334 CRYST1 71.870 107.860 119.040 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008401 0.00000