HEADER HYDROLASE 30-JUN-20 6ZL7 TITLE CRYSTAL STRUCTURE OF C173S MUTATION IN THE PMGL2 ESTERASE FROM TITLE 2 PERMAFROST METAGENOMIC LIBRARY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PMGL2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PMGL2, ESTERASE, PERMAFROST, METAGENOMIC LIBRARY, LIPASE, MUTANT, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.GORYAYNOVA,K.M.BOYKO,A.Y.NIKOLAEVA,D.A.KORZHENEVSKIY, AUTHOR 2 M.V.KRYUKOVA,L.E.PETROVSKAYA,K.A.NOVOTOTSKAYA-VLASOVA,E.M.RIVKINA, AUTHOR 3 D.A.DOLGIKH,M.P.KIRPICHNIKOV,V.O.POPOV REVDAT 2 31-JAN-24 6ZL7 1 REMARK REVDAT 1 08-JUL-20 6ZL7 0 JRNL AUTH D.A.GORYAYNOVA,K.M.BOYKO,A.Y.NIKOLAEVA,D.A.KORZHENEVSKIY, JRNL AUTH 2 M.V.KRYUKOVA,L.E.PETROVSKAYA,K.A.NOVOTOTSKAYA-VLASOVA, JRNL AUTH 3 E.M.RIVKINA,D.A.DOLGIKH,M.P.KIRPICHNIKOV,V.O.POPOV JRNL TITL CRYSTAL STRUCTURE OF C173S MUTATION IN THE PMGL2 ESTERASE JRNL TITL 2 FROM PERMAFROST METAGENOMIC LIBRARY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 90444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 335 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4751 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.302 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4960 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6783 ; 1.891 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 6.455 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;26.241 ;20.120 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 682 ;12.810 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;19.077 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3952 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 56.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6QIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MM MAGNESIUM CHLORIDE, 12-18% REMARK 280 PEG3350, 100MM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.26500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 GLN A 10 REMARK 465 THR A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 MET A 15 REMARK 465 SER A 16 REMARK 465 SER A 334 REMARK 465 SER A 335 REMARK 465 ILE A 336 REMARK 465 PRO A 337 REMARK 465 THR A 338 REMARK 465 PRO A 339 REMARK 465 ARG A 340 REMARK 465 SER A 341 REMARK 465 PRO A 342 REMARK 465 SER A 343 REMARK 465 LEU A 344 REMARK 465 GLU A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 GLN B 10 REMARK 465 THR B 11 REMARK 465 PRO B 12 REMARK 465 GLY B 13 REMARK 465 SER B 334 REMARK 465 SER B 335 REMARK 465 ILE B 336 REMARK 465 PRO B 337 REMARK 465 THR B 338 REMARK 465 PRO B 339 REMARK 465 ARG B 340 REMARK 465 SER B 341 REMARK 465 PRO B 342 REMARK 465 SER B 343 REMARK 465 LEU B 344 REMARK 465 GLU B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 465 HIS B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 ASN A 44 CG OD1 ND2 REMARK 470 ARG A 49 CD NE CZ NH1 NH2 REMARK 470 ARG A 72 CZ NH1 NH2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 221 CG1 CG2 REMARK 470 GLU A 240 CD OE1 OE2 REMARK 470 ALA A 256 CB REMARK 470 SER A 333 C O CB OG REMARK 470 LEU B 14 CG CD1 CD2 REMARK 470 LYS B 39 CD CE NZ REMARK 470 ARG B 67 CZ NH1 NH2 REMARK 470 ARG B 97 CD NE CZ NH1 NH2 REMARK 470 ARG B 157 NE CZ NH1 NH2 REMARK 470 ARG B 162 CD NE CZ NH1 NH2 REMARK 470 PRO B 220 CG CD REMARK 470 SER B 333 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TYR A 208 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 283 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 66 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 174 -123.99 64.74 REMARK 500 SER A 174 -123.99 57.18 REMARK 500 SER B 174 -124.12 62.98 REMARK 500 SER B 174 -124.12 58.70 REMARK 500 VAL B 221 -50.94 -124.14 REMARK 500 PRO B 223 111.67 -32.00 REMARK 500 ASP B 309 57.63 -90.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 220 VAL B 221 -138.35 REMARK 500 VAL B 221 GLY B 222 -147.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG6 A 402 REMARK 610 PG6 B 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 B 401 DBREF1 6ZL7 A 1 343 UNP A0A142J6I6_9BACT DBREF2 6ZL7 A A0A142J6I6 1 343 DBREF1 6ZL7 B 1 343 UNP A0A142J6I6_9BACT DBREF2 6ZL7 B A0A142J6I6 1 343 SEQADV 6ZL7 SER A 173 UNP A0A142J6I CYS 173 ENGINEERED MUTATION SEQADV 6ZL7 LEU A 344 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 GLU A 345 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS A 346 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS A 347 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS A 348 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS A 349 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS A 350 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS A 351 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 SER B 173 UNP A0A142J6I CYS 173 ENGINEERED MUTATION SEQADV 6ZL7 LEU B 344 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 GLU B 345 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS B 346 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS B 347 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS B 348 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS B 349 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS B 350 UNP A0A142J6I EXPRESSION TAG SEQADV 6ZL7 HIS B 351 UNP A0A142J6I EXPRESSION TAG SEQRES 1 A 351 MET ALA SER GLY SER ALA SER SER ALA GLN THR PRO GLY SEQRES 2 A 351 LEU MET SER TRP LEU PRO PRO SER ASN GLN LEU SER PRO SEQRES 3 A 351 GLU ALA ARG SER VAL LEU ASP ARG MET ASP ALA ALA LYS SEQRES 4 A 351 ALA PRO GLU PHE ASN GLY ASP LEU VAL ARG GLN ARG ALA SEQRES 5 A 351 PHE TYR GLN GLN PHE ASN ASP ASP ARG LEU VAL GLU MET SEQRES 6 A 351 ARG ARG VAL PHE ARG THR ARG GLU ARG HIS GLU THR LEU SEQRES 7 A 351 ASN ALA VAL HIS VAL GLN VAL VAL GLU PRO ALA ASP GLY SEQRES 8 A 351 VAL SER ALA ARG ASN ARG ASP ARG VAL LEU ILE ASN VAL SEQRES 9 A 351 HIS GLY GLY ALA PHE MET TRP GLY ALA GLY SER GLY ALA SEQRES 10 A 351 LEU VAL GLU ALA ILE PRO ILE ALA ALA THR MET GLY VAL SEQRES 11 A 351 SER VAL VAL THR VAL ASP TYR ARG LEU ALA PRO GLU ASN SEQRES 12 A 351 ARG TYR PRO ALA ALA SER GLU ASP VAL THR ALA VAL TYR SEQRES 13 A 351 ARG ALA LEU LEU GLU ARG TYR PRO ALA ALA ASN ILE GLY SEQRES 14 A 351 ILE PHE GLY SER SER ALA GLY GLY VAL ILE THR ALA GLN SEQRES 15 A 351 ALA VAL THR TRP ILE ARG ARG GLU GLY LEU PRO ARG PRO SEQRES 16 A 351 GLY ALA ILE GLY THR LEU CYS GLY THR GLY ALA PRO TYR SEQRES 17 A 351 SER GLY ASP SER PRO TYR LEU ALA GLY VAL VAL PRO VAL SEQRES 18 A 351 GLY PRO GLY VAL LYS ALA PRO PRO LEU PRO GLY LEU LEU SEQRES 19 A 351 PRO THR ALA TYR MET GLU GLY VAL GLY ALA ASP ASP ALA SEQRES 20 A 351 ARG ALA TYR PRO LEU THR SER ASP ALA GLU THR VAL PHE SEQRES 21 A 351 MET PRO PRO THR LEU LEU LEU ALA GLY GLY ARG ASP PHE SEQRES 22 A 351 ALA VAL SER ALA LEU SER LEU ALA HIS ARG ARG LEU ALA SEQRES 23 A 351 ARG ALA GLY VAL ASP SER GLU LEU HIS LEU PHE ASP GLY SEQRES 24 A 351 LEU PRO HIS ALA PHE PHE VAL TRP PRO ASP MET PRO GLU SEQRES 25 A 351 SER LEU GLU ALA TYR ALA LEU ILE ALA GLY PHE PHE ASP SEQRES 26 A 351 SER ARG LEU GLY LEU THR PRO SER SER SER ILE PRO THR SEQRES 27 A 351 PRO ARG SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 351 MET ALA SER GLY SER ALA SER SER ALA GLN THR PRO GLY SEQRES 2 B 351 LEU MET SER TRP LEU PRO PRO SER ASN GLN LEU SER PRO SEQRES 3 B 351 GLU ALA ARG SER VAL LEU ASP ARG MET ASP ALA ALA LYS SEQRES 4 B 351 ALA PRO GLU PHE ASN GLY ASP LEU VAL ARG GLN ARG ALA SEQRES 5 B 351 PHE TYR GLN GLN PHE ASN ASP ASP ARG LEU VAL GLU MET SEQRES 6 B 351 ARG ARG VAL PHE ARG THR ARG GLU ARG HIS GLU THR LEU SEQRES 7 B 351 ASN ALA VAL HIS VAL GLN VAL VAL GLU PRO ALA ASP GLY SEQRES 8 B 351 VAL SER ALA ARG ASN ARG ASP ARG VAL LEU ILE ASN VAL SEQRES 9 B 351 HIS GLY GLY ALA PHE MET TRP GLY ALA GLY SER GLY ALA SEQRES 10 B 351 LEU VAL GLU ALA ILE PRO ILE ALA ALA THR MET GLY VAL SEQRES 11 B 351 SER VAL VAL THR VAL ASP TYR ARG LEU ALA PRO GLU ASN SEQRES 12 B 351 ARG TYR PRO ALA ALA SER GLU ASP VAL THR ALA VAL TYR SEQRES 13 B 351 ARG ALA LEU LEU GLU ARG TYR PRO ALA ALA ASN ILE GLY SEQRES 14 B 351 ILE PHE GLY SER SER ALA GLY GLY VAL ILE THR ALA GLN SEQRES 15 B 351 ALA VAL THR TRP ILE ARG ARG GLU GLY LEU PRO ARG PRO SEQRES 16 B 351 GLY ALA ILE GLY THR LEU CYS GLY THR GLY ALA PRO TYR SEQRES 17 B 351 SER GLY ASP SER PRO TYR LEU ALA GLY VAL VAL PRO VAL SEQRES 18 B 351 GLY PRO GLY VAL LYS ALA PRO PRO LEU PRO GLY LEU LEU SEQRES 19 B 351 PRO THR ALA TYR MET GLU GLY VAL GLY ALA ASP ASP ALA SEQRES 20 B 351 ARG ALA TYR PRO LEU THR SER ASP ALA GLU THR VAL PHE SEQRES 21 B 351 MET PRO PRO THR LEU LEU LEU ALA GLY GLY ARG ASP PHE SEQRES 22 B 351 ALA VAL SER ALA LEU SER LEU ALA HIS ARG ARG LEU ALA SEQRES 23 B 351 ARG ALA GLY VAL ASP SER GLU LEU HIS LEU PHE ASP GLY SEQRES 24 B 351 LEU PRO HIS ALA PHE PHE VAL TRP PRO ASP MET PRO GLU SEQRES 25 B 351 SER LEU GLU ALA TYR ALA LEU ILE ALA GLY PHE PHE ASP SEQRES 26 B 351 SER ARG LEU GLY LEU THR PRO SER SER SER ILE PRO THR SEQRES 27 B 351 PRO ARG SER PRO SER LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 401 1 HET PG6 A 402 13 HET PG6 B 401 11 HETNAM MG MAGNESIUM ION HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE FORMUL 3 MG MG 2+ FORMUL 4 PG6 2(C12 H26 O6) FORMUL 6 HOH *453(H2 O) HELIX 1 AA1 SER A 25 ALA A 38 1 14 HELIX 2 AA2 ASP A 46 PHE A 69 1 24 HELIX 3 AA3 SER A 93 ARG A 97 5 5 HELIX 4 AA4 GLY A 114 GLY A 129 1 16 HELIX 5 AA5 PRO A 146 LEU A 160 1 15 HELIX 6 AA6 PRO A 164 ALA A 166 5 3 HELIX 7 AA7 SER A 174 GLU A 190 1 17 HELIX 8 AA8 ASP A 211 ALA A 216 1 6 HELIX 9 AA9 THR A 236 GLU A 240 5 5 HELIX 10 AB1 TYR A 250 THR A 253 5 4 HELIX 11 AB2 SER A 254 PHE A 260 1 7 HELIX 12 AB3 ALA A 274 ALA A 288 1 15 HELIX 13 AB4 ALA A 303 TRP A 307 5 5 HELIX 14 AB5 MET A 310 LEU A 328 1 19 HELIX 15 AB6 LEU B 14 LEU B 18 5 5 HELIX 16 AB7 SER B 25 ALA B 38 1 14 HELIX 17 AB8 ASP B 46 PHE B 69 1 24 HELIX 18 AB9 SER B 93 ARG B 97 5 5 HELIX 19 AC1 GLY B 114 GLY B 129 1 16 HELIX 20 AC2 PRO B 146 LEU B 160 1 15 HELIX 21 AC3 PRO B 164 ALA B 166 5 3 HELIX 22 AC4 SER B 174 GLU B 190 1 17 HELIX 23 AC5 ASP B 211 ALA B 216 1 6 HELIX 24 AC6 THR B 236 GLU B 240 5 5 HELIX 25 AC7 TYR B 250 THR B 253 5 4 HELIX 26 AC8 SER B 254 PHE B 260 1 7 HELIX 27 AC9 ALA B 274 ALA B 288 1 15 HELIX 28 AD1 ALA B 303 TRP B 307 5 5 HELIX 29 AD2 MET B 310 LEU B 328 1 19 SHEET 1 AA1 8 THR A 71 LEU A 78 0 SHEET 2 AA1 8 VAL A 81 PRO A 88 -1 O VAL A 85 N ARG A 74 SHEET 3 AA1 8 VAL A 132 VAL A 135 -1 O VAL A 132 N VAL A 86 SHEET 4 AA1 8 VAL A 100 VAL A 104 1 N LEU A 101 O VAL A 133 SHEET 5 AA1 8 ILE A 168 SER A 173 1 O PHE A 171 N ILE A 102 SHEET 6 AA1 8 ALA A 197 LEU A 201 1 O LEU A 201 N GLY A 172 SHEET 7 AA1 8 THR A 264 GLY A 269 1 O LEU A 265 N ILE A 198 SHEET 8 AA1 8 SER A 292 PHE A 297 1 O GLU A 293 N LEU A 266 SHEET 1 AA2 8 THR B 71 LEU B 78 0 SHEET 2 AA2 8 VAL B 81 PRO B 88 -1 O VAL B 85 N ARG B 74 SHEET 3 AA2 8 VAL B 132 VAL B 135 -1 O VAL B 132 N VAL B 86 SHEET 4 AA2 8 VAL B 100 VAL B 104 1 N LEU B 101 O VAL B 133 SHEET 5 AA2 8 ILE B 168 SER B 173 1 O GLY B 169 N ILE B 102 SHEET 6 AA2 8 ALA B 197 LEU B 201 1 O LEU B 201 N GLY B 172 SHEET 7 AA2 8 THR B 264 GLY B 269 1 O LEU B 265 N ILE B 198 SHEET 8 AA2 8 SER B 292 PHE B 297 1 O GLU B 293 N LEU B 266 LINK MG MG A 401 O HOH A 667 1555 1555 2.99 CISPEP 1 ALA A 140 PRO A 141 0 -2.38 CISPEP 2 TYR A 145 PRO A 146 0 2.63 CISPEP 3 ALA B 140 PRO B 141 0 -2.54 CISPEP 4 TYR B 145 PRO B 146 0 5.56 SITE 1 AC1 7 HIS A 282 GLU A 293 LEU A 294 HOH A 667 SITE 2 AC1 7 HIS B 282 GLU B 293 LEU B 294 SITE 1 AC2 9 SER A 174 ALA A 175 GLY A 203 THR A 204 SITE 2 AC2 9 ALA A 206 TYR A 208 PHE A 273 ALA A 274 SITE 3 AC2 9 ALA A 277 SITE 1 AC3 9 SER B 174 ALA B 175 CYS B 202 GLY B 203 SITE 2 AC3 9 THR B 204 ALA B 206 PHE B 273 ALA B 274 SITE 3 AC3 9 ALA B 277 CRYST1 47.149 92.530 74.410 90.00 106.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021209 0.000000 0.006327 0.00000 SCALE2 0.000000 0.010807 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014024 0.00000