HEADER OXIDOREDUCTASE 30-JUN-20 6ZLJ TITLE CRYSTAL STRUCTURE OF UDP-GLUCURONIC ACID 4-EPIMERASE Y149F MUTANT FROM TITLE 2 BACILLUS CEREUS IN COMPLEX WITH UDP-4-DEOXY-4-FLUORO-GLUCURONIC ACID TITLE 3 AND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIMERASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: IG7_05634; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIMERASE, UDP-4-DEOXY-4-FLUORO-GLUCURONIC ACID, NAD, OXIDOREDUCTASE, KEYWDS 2 UDP-SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.G.IACOVINO,A.MATTEVI REVDAT 3 31-JAN-24 6ZLJ 1 REMARK REVDAT 2 09-SEP-20 6ZLJ 1 JRNL REVDAT 1 29-JUL-20 6ZLJ 0 JRNL AUTH L.G.IACOVINO,S.SAVINO,A.J.E.BORG,C.BINDA,B.NIDETZKY, JRNL AUTH 2 A.MATTEVI JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF UDP-GLUCURONIC ACID JRNL TITL 2 4-EPIMERASE LIGAND BINDING, ROTATION, AND REDUCTION. JRNL REF J.BIOL.CHEM. V. 295 12461 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32661196 JRNL DOI 10.1074/JBC.RA120.014692 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 54213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3953 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 2.56000 REMARK 3 B12 (A**2) : -0.80000 REMARK 3 B13 (A**2) : -1.00000 REMARK 3 B23 (A**2) : 0.92000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.132 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5210 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4846 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7090 ; 1.599 ; 1.664 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11298 ; 1.380 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 6.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;37.321 ;23.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 900 ;14.587 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.680 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 730 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5620 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1000 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292109729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54213 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5U4Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM POTASSIUM ACETATE, 14-24% REMARK 280 PEG3350, 2 MM NAD, 2 MM UDP-4-FLUORO-4-DEOXY-GLUCURONIC ACID, PH REMARK 280 8, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -42.19900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 315 REMARK 465 GLY A 316 REMARK 465 ASP A 317 REMARK 465 ALA A 318 REMARK 465 ALA A 319 REMARK 465 TRP A 320 REMARK 465 SER A 321 REMARK 465 HIS A 322 REMARK 465 PRO A 323 REMARK 465 GLN A 324 REMARK 465 PHE A 325 REMARK 465 GLU A 326 REMARK 465 LYS A 327 REMARK 465 LYS B 315 REMARK 465 GLY B 316 REMARK 465 ASP B 317 REMARK 465 ALA B 318 REMARK 465 ALA B 319 REMARK 465 TRP B 320 REMARK 465 SER B 321 REMARK 465 HIS B 322 REMARK 465 PRO B 323 REMARK 465 GLN B 324 REMARK 465 PHE B 325 REMARK 465 GLU B 326 REMARK 465 LYS B 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 126 O'Q UGF A 402 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 176 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 103 -61.22 -97.10 REMARK 500 SER A 125 -162.31 -120.26 REMARK 500 THR A 178 88.29 21.23 REMARK 500 TRP A 281 112.15 -162.41 REMARK 500 ILE B 103 -63.95 -99.03 REMARK 500 SER B 125 -160.65 -120.18 REMARK 500 LEU B 142 107.58 -54.04 REMARK 500 THR B 178 91.46 24.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UGF A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UGF B 802 DBREF 6ZLJ A 1 317 UNP J8BY31 J8BY31_BACCE 1 317 DBREF 6ZLJ B 1 317 UNP J8BY31 J8BY31_BACCE 1 317 SEQADV 6ZLJ PHE A 149 UNP J8BY31 TYR 149 ENGINEERED MUTATION SEQADV 6ZLJ ALA A 318 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ ALA A 319 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ TRP A 320 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ SER A 321 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ HIS A 322 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ PRO A 323 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ GLN A 324 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ PHE A 325 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ GLU A 326 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ LYS A 327 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ PHE B 149 UNP J8BY31 TYR 149 ENGINEERED MUTATION SEQADV 6ZLJ ALA B 318 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ ALA B 319 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ TRP B 320 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ SER B 321 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ HIS B 322 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ PRO B 323 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ GLN B 324 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ PHE B 325 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ GLU B 326 UNP J8BY31 EXPRESSION TAG SEQADV 6ZLJ LYS B 327 UNP J8BY31 EXPRESSION TAG SEQRES 1 A 327 MET LYS ILE LEU VAL THR GLY ALA ALA GLY PHE ILE GLY SEQRES 2 A 327 SER HIS LEU CYS GLN ALA LEU LEU LYS ASN SER ALA TYR SEQRES 3 A 327 HIS VAL VAL GLY ILE ASP HIS PHE ILE GLY PRO THR PRO SEQRES 4 A 327 ALA THR LEU LYS THR GLY ASN ILE GLN SER LEU GLU LEU SEQRES 5 A 327 ASN SER ARG PHE GLN PHE ILE ARG GLU ASP ILE LEU ASN SEQRES 6 A 327 THR ASP LEU SER LYS LEU LEU GLN ASP ILE ASP VAL VAL SEQRES 7 A 327 TYR HIS LEU ALA ALA ILE PRO GLY VAL ARG THR SER TRP SEQRES 8 A 327 GLY LYS ASP PHE GLN PRO TYR VAL THR ASN ASN ILE MET SEQRES 9 A 327 VAL THR GLN GLN LEU LEU GLU ALA CYS LYS HIS ILE LYS SEQRES 10 A 327 LEU ASP LYS PHE ILE HIS ILE SER THR SER SER VAL TYR SEQRES 11 A 327 GLY GLU LYS SER GLY ALA VAL SER GLU ASP LEU LEU PRO SEQRES 12 A 327 ILE PRO LEU SER PRO PHE GLY VAL THR LYS LEU SER GLY SEQRES 13 A 327 GLU HIS LEU CYS HIS VAL TYR HIS LYS ASN PHE HIS ILE SEQRES 14 A 327 PRO ILE VAL ILE LEU ARG TYR PHE THR VAL TYR GLY PRO SEQRES 15 A 327 ARG GLN ARG PRO ASP MET ALA PHE HIS ARG LEU ILE LYS SEQRES 16 A 327 GLN MET LEU GLU ASP LYS PRO LEU THR ILE PHE GLY ASP SEQRES 17 A 327 GLY THR GLN THR ARG ASP PHE THR TYR ILE ASP ASP CYS SEQRES 18 A 327 ILE ARG GLY THR VAL ALA ALA LEU GLU THR LYS LYS ASN SEQRES 19 A 327 ILE ILE GLY GLU VAL ILE ASN ILE GLY GLY LYS GLU GLN SEQRES 20 A 327 ALA SER ILE LEU ASP ILE ILE SER MET LEU GLU LYS ILE SEQRES 21 A 327 SER GLY LYS SER ALA THR LYS ASN PHE LEU LYS SER VAL SEQRES 22 A 327 PRO GLY GLU PRO LYS GLN THR TRP ALA ASP ILE SER LYS SEQRES 23 A 327 ALA SER THR LEU LEU GLN TYR SER PRO THR VAL SER LEU SEQRES 24 A 327 SER ASP GLY LEU GLU ALA GLU TYR ASP TYR ILE LYS GLN SEQRES 25 A 327 LEU TYR LYS GLY ASP ALA ALA TRP SER HIS PRO GLN PHE SEQRES 26 A 327 GLU LYS SEQRES 1 B 327 MET LYS ILE LEU VAL THR GLY ALA ALA GLY PHE ILE GLY SEQRES 2 B 327 SER HIS LEU CYS GLN ALA LEU LEU LYS ASN SER ALA TYR SEQRES 3 B 327 HIS VAL VAL GLY ILE ASP HIS PHE ILE GLY PRO THR PRO SEQRES 4 B 327 ALA THR LEU LYS THR GLY ASN ILE GLN SER LEU GLU LEU SEQRES 5 B 327 ASN SER ARG PHE GLN PHE ILE ARG GLU ASP ILE LEU ASN SEQRES 6 B 327 THR ASP LEU SER LYS LEU LEU GLN ASP ILE ASP VAL VAL SEQRES 7 B 327 TYR HIS LEU ALA ALA ILE PRO GLY VAL ARG THR SER TRP SEQRES 8 B 327 GLY LYS ASP PHE GLN PRO TYR VAL THR ASN ASN ILE MET SEQRES 9 B 327 VAL THR GLN GLN LEU LEU GLU ALA CYS LYS HIS ILE LYS SEQRES 10 B 327 LEU ASP LYS PHE ILE HIS ILE SER THR SER SER VAL TYR SEQRES 11 B 327 GLY GLU LYS SER GLY ALA VAL SER GLU ASP LEU LEU PRO SEQRES 12 B 327 ILE PRO LEU SER PRO PHE GLY VAL THR LYS LEU SER GLY SEQRES 13 B 327 GLU HIS LEU CYS HIS VAL TYR HIS LYS ASN PHE HIS ILE SEQRES 14 B 327 PRO ILE VAL ILE LEU ARG TYR PHE THR VAL TYR GLY PRO SEQRES 15 B 327 ARG GLN ARG PRO ASP MET ALA PHE HIS ARG LEU ILE LYS SEQRES 16 B 327 GLN MET LEU GLU ASP LYS PRO LEU THR ILE PHE GLY ASP SEQRES 17 B 327 GLY THR GLN THR ARG ASP PHE THR TYR ILE ASP ASP CYS SEQRES 18 B 327 ILE ARG GLY THR VAL ALA ALA LEU GLU THR LYS LYS ASN SEQRES 19 B 327 ILE ILE GLY GLU VAL ILE ASN ILE GLY GLY LYS GLU GLN SEQRES 20 B 327 ALA SER ILE LEU ASP ILE ILE SER MET LEU GLU LYS ILE SEQRES 21 B 327 SER GLY LYS SER ALA THR LYS ASN PHE LEU LYS SER VAL SEQRES 22 B 327 PRO GLY GLU PRO LYS GLN THR TRP ALA ASP ILE SER LYS SEQRES 23 B 327 ALA SER THR LEU LEU GLN TYR SER PRO THR VAL SER LEU SEQRES 24 B 327 SER ASP GLY LEU GLU ALA GLU TYR ASP TYR ILE LYS GLN SEQRES 25 B 327 LEU TYR LYS GLY ASP ALA ALA TRP SER HIS PRO GLN PHE SEQRES 26 B 327 GLU LYS HET NAD A 401 44 HET UGF A 402 37 HET NAD B 801 44 HET UGF B 802 37 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UGF (2~{R},3~{S},4~{R},5~{R},6~{R})-6-[[[(2~{R},3~{S}, HETNAM 2 UGF 4~{R},5~{R})-5-[2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]- HETNAM 3 UGF 3,4-BIS(OXIDANY L)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 4 UGF PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-3-FLUORANYL-4, HETNAM 5 UGF 5-BIS(OXIDANYL)OXANE-2-CARBOXYLIC ACID HETSYN UGF UDP-4-DEOXY-4-FLUORO-GLUCURONIC ACID FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 UGF 2(C15 H21 F N2 O17 P2) FORMUL 7 HOH *168(H2 O) HELIX 1 AA1 GLY A 10 LYS A 22 1 13 HELIX 2 AA2 PRO A 39 ASN A 53 1 15 HELIX 3 AA3 ASP A 62 THR A 66 5 5 HELIX 4 AA4 ASP A 67 GLN A 73 1 7 HELIX 5 AA5 TRP A 91 ASP A 94 5 4 HELIX 6 AA6 PHE A 95 ILE A 103 1 9 HELIX 7 AA7 ILE A 103 LYS A 114 1 12 HELIX 8 AA8 SER A 128 TYR A 130 5 3 HELIX 9 AA9 SER A 147 HIS A 168 1 22 HELIX 10 AB1 MET A 188 GLU A 199 1 12 HELIX 11 AB2 ILE A 218 THR A 231 1 14 HELIX 12 AB3 ILE A 250 GLY A 262 1 13 HELIX 13 AB4 ILE A 284 GLN A 292 1 9 HELIX 14 AB5 SER A 298 TYR A 314 1 17 HELIX 15 AB6 GLY B 10 LYS B 22 1 13 HELIX 16 AB7 PRO B 39 LEU B 52 1 14 HELIX 17 AB8 ASP B 62 THR B 66 5 5 HELIX 18 AB9 ASP B 67 GLN B 73 1 7 HELIX 19 AC1 TRP B 91 ASP B 94 5 4 HELIX 20 AC2 PHE B 95 ILE B 103 1 9 HELIX 21 AC3 ILE B 103 LYS B 114 1 12 HELIX 22 AC4 SER B 128 TYR B 130 5 3 HELIX 23 AC5 SER B 147 HIS B 168 1 22 HELIX 24 AC6 MET B 188 GLU B 199 1 12 HELIX 25 AC7 ILE B 218 THR B 231 1 14 HELIX 26 AC8 ILE B 250 GLY B 262 1 13 HELIX 27 AC9 ILE B 284 GLN B 292 1 9 HELIX 28 AD1 SER B 298 TYR B 314 1 17 SHEET 1 AA1 7 PHE A 56 ILE A 59 0 SHEET 2 AA1 7 HIS A 27 ILE A 31 1 N GLY A 30 O GLN A 57 SHEET 3 AA1 7 LYS A 2 THR A 6 1 N ILE A 3 O VAL A 29 SHEET 4 AA1 7 VAL A 77 HIS A 80 1 O TYR A 79 N LEU A 4 SHEET 5 AA1 7 LYS A 120 THR A 126 1 O ILE A 122 N VAL A 78 SHEET 6 AA1 7 ILE A 171 TYR A 176 1 O LEU A 174 N SER A 125 SHEET 7 AA1 7 VAL A 239 ILE A 242 1 O ILE A 242 N ARG A 175 SHEET 1 AA2 3 VAL A 179 TYR A 180 0 SHEET 2 AA2 3 THR A 212 TYR A 217 1 O THR A 216 N TYR A 180 SHEET 3 AA2 3 GLU A 246 SER A 249 -1 O ALA A 248 N ARG A 213 SHEET 1 AA3 2 LEU A 203 PHE A 206 0 SHEET 2 AA3 2 LYS A 267 LEU A 270 1 O LEU A 270 N ILE A 205 SHEET 1 AA4 7 PHE B 56 ILE B 59 0 SHEET 2 AA4 7 HIS B 27 ILE B 31 1 N GLY B 30 O ILE B 59 SHEET 3 AA4 7 LYS B 2 THR B 6 1 N VAL B 5 O VAL B 29 SHEET 4 AA4 7 VAL B 77 HIS B 80 1 O TYR B 79 N LEU B 4 SHEET 5 AA4 7 LYS B 120 THR B 126 1 O ILE B 122 N VAL B 78 SHEET 6 AA4 7 ILE B 171 TYR B 176 1 O LEU B 174 N SER B 125 SHEET 7 AA4 7 VAL B 239 ILE B 242 1 O ILE B 242 N ARG B 175 SHEET 1 AA5 2 VAL B 179 TYR B 180 0 SHEET 2 AA5 2 THR B 216 TYR B 217 1 O THR B 216 N TYR B 180 SHEET 1 AA6 2 LEU B 203 PHE B 206 0 SHEET 2 AA6 2 LYS B 267 LEU B 270 1 O LEU B 270 N ILE B 205 SHEET 1 AA7 2 THR B 212 ARG B 213 0 SHEET 2 AA7 2 ALA B 248 SER B 249 -1 O ALA B 248 N ARG B 213 SITE 1 AC1 32 GLY A 7 GLY A 10 PHE A 11 ILE A 12 SITE 2 AC1 32 ASP A 32 HIS A 33 PHE A 34 ILE A 35 SITE 3 AC1 32 LYS A 43 GLU A 61 ASP A 62 ILE A 63 SITE 4 AC1 32 LEU A 81 ALA A 82 ALA A 83 ASN A 101 SITE 5 AC1 32 VAL A 105 ILE A 124 SER A 125 THR A 126 SITE 6 AC1 32 LYS A 153 TYR A 176 THR A 178 VAL A 179 SITE 7 AC1 32 ARG A 185 MET A 188 UGF A 402 HOH A 501 SITE 8 AC1 32 HOH A 506 HOH A 537 HOH A 545 HOH A 552 SITE 1 AC2 27 PRO A 85 VAL A 87 ARG A 88 THR A 126 SITE 2 AC2 27 SER A 127 SER A 128 PHE A 149 TYR A 176 SITE 3 AC2 27 PHE A 177 THR A 178 ARG A 185 MET A 188 SITE 4 AC2 27 ALA A 189 ARG A 192 THR A 204 ILE A 205 SITE 5 AC2 27 PHE A 206 GLN A 211 ARG A 213 ILE A 250 SITE 6 AC2 27 GLU A 276 NAD A 401 HOH A 501 HOH A 504 SITE 7 AC2 27 HOH A 524 HOH A 549 HOH A 557 SITE 1 AC3 31 GLY B 7 GLY B 10 PHE B 11 ILE B 12 SITE 2 AC3 31 ASP B 32 HIS B 33 PHE B 34 ILE B 35 SITE 3 AC3 31 LYS B 43 GLU B 61 ASP B 62 ILE B 63 SITE 4 AC3 31 LEU B 81 ALA B 82 ALA B 83 ASN B 101 SITE 5 AC3 31 VAL B 105 ILE B 124 SER B 125 THR B 126 SITE 6 AC3 31 LYS B 153 TYR B 176 VAL B 179 ARG B 185 SITE 7 AC3 31 MET B 188 UGF B 802 HOH B 901 HOH B 903 SITE 8 AC3 31 HOH B 925 HOH B 948 HOH B 953 SITE 1 AC4 23 PRO B 85 ARG B 88 THR B 126 SER B 127 SITE 2 AC4 23 SER B 128 PHE B 149 TYR B 176 PHE B 177 SITE 3 AC4 23 THR B 178 ARG B 185 MET B 188 ALA B 189 SITE 4 AC4 23 ARG B 192 THR B 204 ILE B 205 PHE B 206 SITE 5 AC4 23 GLN B 211 ARG B 213 ILE B 250 GLU B 276 SITE 6 AC4 23 NAD B 801 HOH B 901 HOH B 931 CRYST1 42.199 58.222 64.439 97.25 98.18 109.93 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023697 0.008590 0.005111 0.00000 SCALE2 0.000000 0.018269 0.003491 0.00000 SCALE3 0.000000 0.000000 0.015962 0.00000