HEADER TRANSCRIPTION 01-JUL-20 6ZLY TITLE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN PPARGAMMA LBD AND THE LIGAND TITLE 2 NV1362 (7A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPAR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP C MEMBER 3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPARG, NR1C3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.POCHETTI,R.MONTANARI,D.CAPELLI REVDAT 2 31-JAN-24 6ZLY 1 REMARK REVDAT 1 25-NOV-20 6ZLY 0 JRNL AUTH F.PEIRETTI,R.MONTANARI,D.CAPELLI,B.BONARDO,C.COLSON, JRNL AUTH 2 E.Z.AMRI,M.GRIMALDI,P.BALAGUER,K.ITO,R.G.ROEDER,G.POCHETTI, JRNL AUTH 3 J.M.BRUNEL JRNL TITL A NOVEL N-SUBSTITUTED VALINE DERIVATIVE WITH UNIQUE JRNL TITL 2 PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA BINDING JRNL TITL 3 PROPERTIES AND BIOLOGICAL ACTIVITIES. JRNL REF J.MED.CHEM. V. 63 13124 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 33142057 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01555 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.MONTANARI,D.CAPELLI,G.POCHETTI,T.ITOH,K.YAMAMOTO, REMARK 1 AUTH 2 F.LOIODICE,F.ALTIERI,A.PAIARDINI,A.GROTTESI,E.PEDONE, REMARK 1 AUTH 3 L.PIRONE,F.PEIRETTI,J.M.BRUNEL,A.BARENDREGT,A.J.R.HECK, REMARK 1 AUTH 4 H.AWAISHIMA,K.NISHIKATA REMARK 1 TITL INSIGHTS INTO PPARGAMMA PHOSPHORYLATION AND ITS INHIBITION REMARK 1 TITL 2 MECHANISM REMARK 1 REF J. MED. CHEM. V. 63 4811 2020 REMARK 1 REFN ISSN 0022-2623 REMARK 1 DOI 10.1021/ACS.JMEDCHEM.0C00048 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 57502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.4180 - 4.9375 0.97 2719 145 0.2177 0.2374 REMARK 3 2 4.9375 - 3.9193 0.95 2602 141 0.1886 0.2421 REMARK 3 3 3.9193 - 3.4240 0.98 2693 145 0.2114 0.2748 REMARK 3 4 3.4240 - 3.1110 0.95 2587 129 0.2320 0.2737 REMARK 3 5 3.1110 - 2.8880 0.97 2613 145 0.2522 0.3038 REMARK 3 6 2.8880 - 2.7177 0.98 2639 152 0.2318 0.3114 REMARK 3 7 2.7177 - 2.5816 0.97 2606 158 0.2395 0.3009 REMARK 3 8 2.5816 - 2.4692 0.97 2600 138 0.2431 0.2935 REMARK 3 9 2.4692 - 2.3742 0.91 2462 123 0.2327 0.2653 REMARK 3 10 2.3742 - 2.2922 0.96 2596 147 0.2282 0.2500 REMARK 3 11 2.2922 - 2.2206 0.97 2584 140 0.2305 0.2939 REMARK 3 12 2.2206 - 2.1571 0.97 2627 146 0.2372 0.2859 REMARK 3 13 2.1571 - 2.1003 0.97 2649 129 0.2446 0.3089 REMARK 3 14 2.1003 - 2.0491 0.97 2568 141 0.2574 0.3258 REMARK 3 15 2.0491 - 2.0025 0.92 2501 125 0.2818 0.3206 REMARK 3 16 2.0025 - 1.9599 0.95 2572 125 0.3031 0.3156 REMARK 3 17 1.9599 - 1.9206 0.96 2570 139 0.3240 0.3725 REMARK 3 18 1.9206 - 1.8844 0.97 2627 130 0.3459 0.4053 REMARK 3 19 1.8844 - 1.8507 0.97 2566 152 0.3785 0.4336 REMARK 3 20 1.8507 - 1.8194 0.97 2612 126 0.4124 0.3941 REMARK 3 21 1.8194 - 1.7900 0.97 2600 133 0.4347 0.4645 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4092 REMARK 3 ANGLE : 1.288 5516 REMARK 3 CHIRALITY : 0.045 644 REMARK 3 PLANARITY : 0.007 698 REMARK 3 DIHEDRAL : 15.961 1569 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57534 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 57.418 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.13800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 6QJ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM CITRATE, 0.15 M TRIS, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.44500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.44500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 SER A 184 REMARK 465 SER A 185 REMARK 465 GLY A 186 REMARK 465 LEU A 187 REMARK 465 VAL A 188 REMARK 465 PRO A 189 REMARK 465 ARG A 190 REMARK 465 GLY A 191 REMARK 465 SER A 192 REMARK 465 HIS A 193 REMARK 465 MET A 194 REMARK 465 ALA A 195 REMARK 465 GLU A 196 REMARK 465 ILE A 197 REMARK 465 SER A 198 REMARK 465 SER A 199 REMARK 465 ASP A 200 REMARK 465 ILE A 201 REMARK 465 ASP A 202 REMARK 465 GLN A 203 REMARK 465 LEU A 204 REMARK 465 ASN A 205 REMARK 465 PRO A 206 REMARK 465 ASP A 260 REMARK 465 LYS A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 PHE A 264 REMARK 465 LYS A 265 REMARK 465 HIS A 266 REMARK 465 ILE A 267 REMARK 465 THR A 268 REMARK 465 PRO A 269 REMARK 465 LEU A 270 REMARK 465 GLN A 271 REMARK 465 GLU A 272 REMARK 465 GLN A 273 REMARK 465 SER A 274 REMARK 465 LYS A 275 REMARK 465 ASP A 475 REMARK 465 LEU A 476 REMARK 465 TYR A 477 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 SER B 184 REMARK 465 SER B 185 REMARK 465 GLY B 186 REMARK 465 LEU B 187 REMARK 465 VAL B 188 REMARK 465 PRO B 189 REMARK 465 ARG B 190 REMARK 465 GLY B 191 REMARK 465 SER B 192 REMARK 465 HIS B 193 REMARK 465 MET B 194 REMARK 465 ALA B 195 REMARK 465 GLU B 196 REMARK 465 ILE B 197 REMARK 465 SER B 198 REMARK 465 SER B 199 REMARK 465 ASP B 200 REMARK 465 ILE B 201 REMARK 465 ASP B 202 REMARK 465 GLN B 203 REMARK 465 LEU B 204 REMARK 465 ASN B 205 REMARK 465 PRO B 206 REMARK 465 THR B 242 REMARK 465 GLY B 258 REMARK 465 GLU B 259 REMARK 465 ASP B 260 REMARK 465 LYS B 261 REMARK 465 ILE B 262 REMARK 465 LYS B 263 REMARK 465 PHE B 264 REMARK 465 LYS B 265 REMARK 465 HIS B 266 REMARK 465 ILE B 267 REMARK 465 THR B 268 REMARK 465 PRO B 269 REMARK 465 LEU B 270 REMARK 465 GLN B 271 REMARK 465 GLU B 272 REMARK 465 GLN B 273 REMARK 465 SER B 274 REMARK 465 LYS B 275 REMARK 465 ASP B 462 REMARK 465 MET B 463 REMARK 465 SER B 464 REMARK 465 LEU B 465 REMARK 465 LYS B 474 REMARK 465 ASP B 475 REMARK 465 LEU B 476 REMARK 465 TYR B 477 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 359 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 PRO A 359 C - N - CD ANGL. DEV. = -12.9 DEGREES REMARK 500 PRO B 467 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 PRO B 467 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 240 -144.80 70.71 REMARK 500 THR A 241 100.43 -58.45 REMARK 500 THR A 242 43.95 -108.05 REMARK 500 ASP A 310 128.45 -38.60 REMARK 500 LYS A 358 -118.11 54.61 REMARK 500 LEU A 393 55.82 -90.13 REMARK 500 LEU B 237 -106.27 -79.22 REMARK 500 LYS B 240 71.67 -113.58 REMARK 500 LYS B 244 88.63 57.56 REMARK 500 VAL B 277 -88.45 -13.44 REMARK 500 SER B 342 74.70 51.91 REMARK 500 GLU B 343 19.09 54.94 REMARK 500 LYS B 358 -91.02 12.73 REMARK 500 LEU B 393 55.44 -90.14 REMARK 500 SER B 394 -70.57 -71.30 REMARK 500 THR B 459 -71.61 -108.47 REMARK 500 PRO B 467 -73.27 -61.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 570 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QMH A 501 DBREF 6ZLY A 195 477 UNP P37231 PPARG_HUMAN 223 505 DBREF 6ZLY B 195 477 UNP P37231 PPARG_HUMAN 223 505 SEQADV 6ZLY HIS A 178 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS A 179 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS A 180 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS A 181 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS A 182 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS A 183 UNP P37231 EXPRESSION TAG SEQADV 6ZLY SER A 184 UNP P37231 EXPRESSION TAG SEQADV 6ZLY SER A 185 UNP P37231 EXPRESSION TAG SEQADV 6ZLY GLY A 186 UNP P37231 EXPRESSION TAG SEQADV 6ZLY LEU A 187 UNP P37231 EXPRESSION TAG SEQADV 6ZLY VAL A 188 UNP P37231 EXPRESSION TAG SEQADV 6ZLY PRO A 189 UNP P37231 EXPRESSION TAG SEQADV 6ZLY ARG A 190 UNP P37231 EXPRESSION TAG SEQADV 6ZLY GLY A 191 UNP P37231 EXPRESSION TAG SEQADV 6ZLY SER A 192 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS A 193 UNP P37231 EXPRESSION TAG SEQADV 6ZLY MET A 194 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS B 178 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS B 179 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS B 180 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS B 181 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS B 182 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS B 183 UNP P37231 EXPRESSION TAG SEQADV 6ZLY SER B 184 UNP P37231 EXPRESSION TAG SEQADV 6ZLY SER B 185 UNP P37231 EXPRESSION TAG SEQADV 6ZLY GLY B 186 UNP P37231 EXPRESSION TAG SEQADV 6ZLY LEU B 187 UNP P37231 EXPRESSION TAG SEQADV 6ZLY VAL B 188 UNP P37231 EXPRESSION TAG SEQADV 6ZLY PRO B 189 UNP P37231 EXPRESSION TAG SEQADV 6ZLY ARG B 190 UNP P37231 EXPRESSION TAG SEQADV 6ZLY GLY B 191 UNP P37231 EXPRESSION TAG SEQADV 6ZLY SER B 192 UNP P37231 EXPRESSION TAG SEQADV 6ZLY HIS B 193 UNP P37231 EXPRESSION TAG SEQADV 6ZLY MET B 194 UNP P37231 EXPRESSION TAG SEQRES 1 A 300 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 300 GLY SER HIS MET ALA GLU ILE SER SER ASP ILE ASP GLN SEQRES 3 A 300 LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS SEQRES 4 A 300 HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR SEQRES 5 A 300 LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR SEQRES 6 A 300 ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU SEQRES 7 A 300 MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR SEQRES 8 A 300 PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE SEQRES 9 A 300 PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN SEQRES 10 A 300 GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL SEQRES 11 A 300 ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR SEQRES 12 A 300 GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU SEQRES 13 A 300 MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY SEQRES 14 A 300 PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO SEQRES 15 A 300 PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL SEQRES 16 A 300 LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA SEQRES 17 A 300 ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO SEQRES 18 A 300 GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP SEQRES 19 A 300 ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN SEQRES 20 A 300 HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN SEQRES 21 A 300 LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL SEQRES 22 A 300 GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SEQRES 23 A 300 SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU SEQRES 24 A 300 TYR SEQRES 1 B 300 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 B 300 GLY SER HIS MET ALA GLU ILE SER SER ASP ILE ASP GLN SEQRES 3 B 300 LEU ASN PRO GLU SER ALA ASP LEU ARG ALA LEU ALA LYS SEQRES 4 B 300 HIS LEU TYR ASP SER TYR ILE LYS SER PHE PRO LEU THR SEQRES 5 B 300 LYS ALA LYS ALA ARG ALA ILE LEU THR GLY LYS THR THR SEQRES 6 B 300 ASP LYS SER PRO PHE VAL ILE TYR ASP MET ASN SER LEU SEQRES 7 B 300 MET MET GLY GLU ASP LYS ILE LYS PHE LYS HIS ILE THR SEQRES 8 B 300 PRO LEU GLN GLU GLN SER LYS GLU VAL ALA ILE ARG ILE SEQRES 9 B 300 PHE GLN GLY CYS GLN PHE ARG SER VAL GLU ALA VAL GLN SEQRES 10 B 300 GLU ILE THR GLU TYR ALA LYS SER ILE PRO GLY PHE VAL SEQRES 11 B 300 ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR SEQRES 12 B 300 GLY VAL HIS GLU ILE ILE TYR THR MET LEU ALA SER LEU SEQRES 13 B 300 MET ASN LYS ASP GLY VAL LEU ILE SER GLU GLY GLN GLY SEQRES 14 B 300 PHE MET THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO SEQRES 15 B 300 PHE GLY ASP PHE MET GLU PRO LYS PHE GLU PHE ALA VAL SEQRES 16 B 300 LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP LEU ALA SEQRES 17 B 300 ILE PHE ILE ALA VAL ILE ILE LEU SER GLY ASP ARG PRO SEQRES 18 B 300 GLY LEU LEU ASN VAL LYS PRO ILE GLU ASP ILE GLN ASP SEQRES 19 B 300 ASN LEU LEU GLN ALA LEU GLU LEU GLN LEU LYS LEU ASN SEQRES 20 B 300 HIS PRO GLU SER SER GLN LEU PHE ALA LYS LEU LEU GLN SEQRES 21 B 300 LYS MET THR ASP LEU ARG GLN ILE VAL THR GLU HIS VAL SEQRES 22 B 300 GLN LEU LEU GLN VAL ILE LYS LYS THR GLU THR ASP MET SEQRES 23 B 300 SER LEU HIS PRO LEU LEU GLN GLU ILE TYR LYS ASP LEU SEQRES 24 B 300 TYR HET QMH A 501 23 HETNAM QMH (2~{S})-2-[(4-HEXOXYPHENYL)CARBONYLAMINO]-3-METHYL- HETNAM 2 QMH BUTANOIC ACID FORMUL 3 QMH C18 H27 N O4 FORMUL 4 HOH *164(H2 O) HELIX 1 AA1 GLU A 207 PHE A 226 1 20 HELIX 2 AA2 THR A 229 THR A 238 1 10 HELIX 3 AA3 ASP A 251 GLU A 259 1 9 HELIX 4 AA4 VAL A 277 ILE A 303 1 27 HELIX 5 AA5 GLY A 305 LEU A 309 5 5 HELIX 6 AA6 ASP A 310 SER A 332 1 23 HELIX 7 AA7 ARG A 350 SER A 355 1 6 HELIX 8 AA8 PRO A 359 PHE A 363 5 5 HELIX 9 AA9 MET A 364 ASN A 375 1 12 HELIX 10 AB1 ALA A 376 GLU A 378 5 3 HELIX 11 AB2 ASP A 380 LEU A 393 1 14 HELIX 12 AB3 ASN A 402 HIS A 425 1 24 HELIX 13 AB4 GLN A 430 GLU A 460 1 31 HELIX 14 AB5 HIS A 466 TYR A 473 1 8 HELIX 15 AB6 SER B 208 PHE B 226 1 19 HELIX 16 AB7 THR B 229 LEU B 237 1 9 HELIX 17 AB8 ASP B 251 MET B 257 1 7 HELIX 18 AB9 VAL B 277 LYS B 301 1 25 HELIX 19 AC1 GLY B 305 LEU B 309 5 5 HELIX 20 AC2 ASP B 310 SER B 332 1 23 HELIX 21 AC3 ARG B 350 SER B 355 1 6 HELIX 22 AC4 ARG B 357 ASP B 362 1 6 HELIX 23 AC5 MET B 364 ALA B 376 1 13 HELIX 24 AC6 ASP B 380 LEU B 393 1 14 HELIX 25 AC7 ASN B 402 HIS B 425 1 24 HELIX 26 AC8 GLN B 430 ILE B 456 1 27 HELIX 27 AC9 LYS B 457 THR B 459 5 3 HELIX 28 AD1 PRO B 467 TYR B 473 1 7 SHEET 1 AA1 4 PHE A 247 ILE A 249 0 SHEET 2 AA1 4 GLY A 346 THR A 349 1 O PHE A 347 N ILE A 249 SHEET 3 AA1 4 GLY A 338 ILE A 341 -1 N VAL A 339 O MET A 348 SHEET 4 AA1 4 MET A 334 ASN A 335 -1 N ASN A 335 O GLY A 338 SHEET 1 AA2 4 PHE B 247 ILE B 249 0 SHEET 2 AA2 4 GLY B 346 THR B 349 1 O PHE B 347 N ILE B 249 SHEET 3 AA2 4 GLY B 338 ILE B 341 -1 N VAL B 339 O MET B 348 SHEET 4 AA2 4 MET B 334 ASN B 335 -1 N ASN B 335 O GLY B 338 SITE 1 AC1 12 CYS A 285 GLN A 286 ARG A 288 SER A 289 SITE 2 AC1 12 HIS A 323 TYR A 327 MET A 329 LEU A 330 SITE 3 AC1 12 PHE A 363 HIS A 449 LEU A 469 TYR A 473 CRYST1 92.890 60.070 118.020 90.00 103.34 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010765 0.000000 0.002553 0.00000 SCALE2 0.000000 0.016647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008708 0.00000