HEADER HYDROLASE 01-JUL-20 6ZM8 TITLE STRUCTURE OF MURAMIDASE FROM ACREMONIUM ALCALOPHILUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MURAMIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SODIOMYCES ALCALOPHILUS; SOURCE 3 ORGANISM_TAXID: 398408; SOURCE 4 EXPRESSION_SYSTEM: TRICHODERMA REESEI RUT C-30; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1344414 KEYWDS MURAMIDASE, FUNGAL, GH25, LYSOZYME, INDUSTRIAL APPLICATION, KEYWDS 2 PEPTIDOGLYCAN CLEAVAGE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,E.BLAGOVA,E.TAYLOR,J.P.TURKENBURG,L.K.SKOV,G.P.GIPPERT, AUTHOR 2 K.M.SCHNORR,L.MING,L.YE,M.KLAUSEN,M.T.COHN,E.G.W.SCHMIDT,S.NYMAND- AUTHOR 3 GRARUP,G.J.DAVIES,K.S.WILSON REVDAT 4 23-OCT-24 6ZM8 1 REMARK REVDAT 3 31-JAN-24 6ZM8 1 REMARK REVDAT 2 26-JAN-22 6ZM8 1 JRNL REVDAT 1 14-JUL-21 6ZM8 0 JRNL AUTH O.V.MOROZ,E.BLAGOVA,E.TAYLOR,J.P.TURKENBURG,L.K.SKOV, JRNL AUTH 2 G.P.GIPPERT,K.M.SCHNORR,L.MING,L.YE,M.KLAUSEN,M.T.COHN, JRNL AUTH 3 E.G.W.SCHMIDT,S.NYMAND-GRARUP,G.J.DAVIES,K.S.WILSON JRNL TITL FUNGAL GH25 MURAMIDASES: NEW FAMILY MEMBERS WITH JRNL TITL 2 APPLICATIONS IN ANIMAL NUTRITION AND A CRYSTAL STRUCTURE AT JRNL TITL 3 0.78 ANGSTROM RESOLUTION. JRNL REF PLOS ONE V. 16 48190 2021 JRNL REFN ESSN 1932-6203 JRNL PMID 33711051 JRNL DOI 10.1371/JOURNAL.PONE.0248190 REMARK 2 REMARK 2 RESOLUTION. 0.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 200983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.986 REMARK 3 FREE R VALUE TEST SET COUNT : 10021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12774 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 597 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03400 REMARK 3 B22 (A**2) : -0.12200 REMARK 3 B33 (A**2) : 0.09900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.011 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.011 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.009 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.306 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.983 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1796 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1475 ; 0.005 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2471 ; 1.980 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3423 ; 1.826 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 233 ; 7.298 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;30.988 ;21.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 239 ;11.856 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.902 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 226 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2173 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 470 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 391 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 42 ; 0.229 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 892 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.358 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 884 ; 7.215 ; 0.753 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 883 ; 7.217 ; 0.752 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1121 ; 6.788 ; 1.124 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1122 ; 6.786 ; 1.125 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 912 ; 3.340 ; 0.879 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 909 ; 3.345 ; 0.877 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1346 ; 4.947 ; 1.261 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1345 ; 4.947 ; 1.260 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3271 ;15.837 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6ZM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2-4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.65 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 201033 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.780 REMARK 200 RESOLUTION RANGE LOW (A) : 38.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2X8R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M PHOSPHATE/CITRATE PH REMARK 280 4.2, 20% W/V PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.63600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 344 O HOH A 541 1.46 REMARK 500 O HOH A 569 O HOH A 603 1.48 REMARK 500 O HOH A 437 O HOH A 567 1.49 REMARK 500 O HOH A 571 O HOH A 595 1.50 REMARK 500 O HOH A 327 O HOH A 497 1.50 REMARK 500 O HOH A 348 O HOH A 546 1.64 REMARK 500 O HOH A 415 O HOH A 447 1.66 REMARK 500 O HOH A 569 O HOH A 589 1.68 REMARK 500 O HOH A 424 O HOH A 448 1.72 REMARK 500 O HOH A 425 O HOH A 440 1.72 REMARK 500 O HOH A 305 O HOH A 472 1.79 REMARK 500 O HOH A 544 O HOH A 567 1.86 REMARK 500 O HOH A 306 O HOH A 401 1.88 REMARK 500 O HOH A 541 O HOH A 556 1.88 REMARK 500 O HOH A 422 O HOH A 580 1.96 REMARK 500 O HOH A 304 O HOH A 522 1.96 REMARK 500 O HOH A 357 O HOH A 365 1.98 REMARK 500 OG1 THR A 35 O HOH A 301 2.00 REMARK 500 O HOH A 306 O HOH A 621 2.01 REMARK 500 O HOH A 415 O HOH A 589 2.03 REMARK 500 O HOH A 486 O HOH A 599 2.11 REMARK 500 O HOH A 323 O HOH A 327 2.15 REMARK 500 O HOH A 357 O HOH A 608 2.17 REMARK 500 O HOH A 514 O HOH A 520 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 139 O HOH A 323 1455 1.86 REMARK 500 O HOH A 512 O HOH A 556 2545 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 100 CA PRO A 100 C 0.125 REMARK 500 PRO A 100 C PRO A 100 O -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 PRO A 100 CA - C - O ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 97 -163.88 -162.24 REMARK 500 SER A 129 -5.65 87.73 REMARK 500 ARG A 161 115.42 -164.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 100 -10.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 651 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 652 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 653 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A 654 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A 655 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A 656 DISTANCE = 7.46 ANGSTROMS DBREF 6ZM8 A 1 208 PDB 6ZM8 6ZM8 1 208 SEQRES 1 A 208 ARG ILE PRO GLY PHE ASP ILE SER GLY TRP GLN PRO THR SEQRES 2 A 208 THR ASP PHE ALA ARG ALA TYR ALA ASN GLY ASP ARG PHE SEQRES 3 A 208 VAL TYR ILE LYS ALA THR GLU GLY THR THR PHE LYS SER SEQRES 4 A 208 SER ALA PHE SER ARG GLN TYR THR GLY ALA THR GLN ASN SEQRES 5 A 208 GLY PHE ILE ARG GLY ALA TYR HIS PHE ALA GLN PRO ALA SEQRES 6 A 208 ALA SER SER GLY ALA ALA GLN ALA ARG TYR PHE ALA SER SEQRES 7 A 208 ASN GLY GLY GLY TRP SER LYS ASP GLY ILE THR LEU PRO SEQRES 8 A 208 GLY ALA LEU ASP ILE GLU TYR ASN PRO ASN GLY ALA THR SEQRES 9 A 208 CYS TYR GLY LEU SER GLN SER ALA MET VAL ASN TRP ILE SEQRES 10 A 208 GLU ASP PHE VAL THR THR TYR HIS GLY ILE THR SER ARG SEQRES 11 A 208 TRP PRO VAL ILE TYR THR THR THR ASP TRP TRP THR GLN SEQRES 12 A 208 CYS THR GLY ASN SER ASN ARG PHE ALA ASN ARG CYS PRO SEQRES 13 A 208 LEU TRP ILE ALA ARG TYR ALA SER SER VAL GLY THR LEU SEQRES 14 A 208 PRO ASN GLY TRP GLY PHE TYR THR PHE TRP GLN TYR ASN SEQRES 15 A 208 ASP LYS TYR PRO GLN GLY GLY ASP SER ASN TRP PHE ASN SEQRES 16 A 208 GLY ASP ALA SER ARG LEU ARG ALA LEU ALA ASN GLY ASP FORMUL 2 HOH *356(H2 O) HELIX 1 AA1 ASP A 15 GLY A 23 1 9 HELIX 2 AA2 ALA A 41 ASN A 52 1 12 HELIX 3 AA3 SER A 68 ASN A 79 1 12 HELIX 4 AA4 SER A 109 SER A 129 1 21 HELIX 5 AA5 THR A 137 GLY A 146 1 10 HELIX 6 AA6 ASP A 197 GLY A 207 1 11 SHEET 1 AA110 PHE A 37 LYS A 38 0 SHEET 2 AA110 PHE A 26 GLU A 33 -1 N GLU A 33 O PHE A 37 SHEET 3 AA110 ILE A 55 PHE A 61 1 O TYR A 59 N ALA A 31 SHEET 4 AA110 ALA A 93 ASP A 95 1 O ASP A 95 N HIS A 60 SHEET 5 AA110 VAL A 133 THR A 136 1 O VAL A 133 N LEU A 94 SHEET 6 AA110 LEU A 157 ALA A 160 1 O TRP A 158 N ILE A 134 SHEET 7 AA110 PHE A 178 ASN A 182 1 O GLN A 180 N ILE A 159 SHEET 8 AA110 ASP A 190 PHE A 194 -1 O TRP A 193 N TRP A 179 SHEET 9 AA110 ILE A 2 ILE A 7 -1 N ILE A 2 O PHE A 194 SHEET 10 AA110 PHE A 26 GLU A 33 1 O LYS A 30 N ILE A 7 SSBOND 1 CYS A 105 CYS A 144 1555 1555 2.02 CRYST1 34.087 77.272 35.728 90.00 104.20 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029337 0.000000 0.007421 0.00000 SCALE2 0.000000 0.012941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028871 0.00000