HEADER OXIDOREDUCTASE 02-JUL-20 6ZMB TITLE STRUCTURE OF THE NATIVE TRNA-MONOOXYGENASE ENZYME MIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA HYDROXYLASE; COMPND 3 CHAIN: B, C; COMPND 4 SYNONYM: TRNA-(MS[2]IO[6]A)-HYDROXYLASE (MIAE),TRNA-(MS[2]IO[6]A)- COMPND 5 HYDROXYLASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA KT2440; SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 GENE: AYO08_21560, CBL13_00280, CBP06_18695; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS TRNA-MONOOXYGENASE METALLO-ENZYME TRNA-MODIFYING ENZYME HYDROXYLASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.CARPENTIER,M.ATTA REVDAT 3 31-JAN-24 6ZMB 1 REMARK REVDAT 2 07-OCT-20 6ZMB 1 JRNL REVDAT 1 02-SEP-20 6ZMB 0 JRNL AUTH P.CARPENTIER,C.LEPRETRE,C.BASSET,T.DOUKI,S.TORELLI,V.DUARTE, JRNL AUTH 2 D.HAMDANE,M.FONTECAVE,M.ATTA JRNL TITL STRUCTURAL, BIOCHEMICAL AND FUNCTIONAL ANALYSES OF JRNL TITL 2 TRNA-MONOOXYGENASE ENZYME MIAE FROM PSEUDOMONAS PUTIDA JRNL TITL 3 PROVIDE INSIGHTS INTO TRNA/MIAE INTERACTION. JRNL REF NUCLEIC ACIDS RES. V. 48 9918 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32785618 JRNL DOI 10.1093/NAR/GKAA667 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 48185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.7300 - 1.7000 0.00 0 0 0.3650 0.3960 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9753 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48290 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.440 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ITB REMARK 200 REMARK 200 REMARK: ELONGATED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MIAE: 20 MG/ML IN 100 MM HEPES, PH REMARK 280 7.5, 30MM NACL RESERVOIR SOLUTION: 0.5M CACL2, 42% PEG 6K, 2M REMARK 280 TRIS-CL PH 8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.39850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.46450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.39850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.46450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 481 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 485 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 491 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 142 CD NE CZ NH1 NH2 REMARK 470 ARG B 174 NE CZ NH1 NH2 REMARK 470 ARG C 78 NH1 NH2 REMARK 470 LYS C 149 CE NZ REMARK 470 GLU C 168 OE1 OE2 REMARK 470 ARG C 173 CD NE CZ NH1 NH2 REMARK 470 ARG C 174 CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU B 3 CD2 REMARK 480 LYS B 51 NZ REMARK 480 LEU B 79 CD1 CD2 REMARK 480 ARG B 101 CD NE NH1 REMARK 480 LYS B 160 CE NZ REMARK 480 ASP B 167 CG OD1 OD2 REMARK 480 GLU B 192 CG CD OE1 OE2 REMARK 480 LEU C 3 CG CD1 CD2 REMARK 480 ARG C 78 CD NE CZ REMARK 480 LYS C 81 CG CD CE NZ REMARK 480 LYS C 149 CD REMARK 480 ARG C 173 CG REMARK 480 LEU C 177 CD1 CD2 REMARK 480 GLN C 191 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 435 O HOH C 495 1.94 REMARK 500 O HOH C 402 O HOH C 484 2.02 REMARK 500 NH1 ARG C 100 O HOH C 401 2.08 REMARK 500 O HOH B 461 O HOH B 476 2.10 REMARK 500 O HOH C 504 O HOH C 511 2.12 REMARK 500 O HOH C 465 O HOH C 494 2.15 REMARK 500 O HOH C 433 O HOH C 482 2.15 REMARK 500 O HOH B 401 O HOH B 468 2.15 REMARK 500 O HOH C 511 O HOH C 517 2.15 REMARK 500 OE2 GLU B 151 O2 TRS B 306 2.16 REMARK 500 O HOH B 471 O HOH B 492 2.16 REMARK 500 O GLY C 166 O HOH C 402 2.17 REMARK 500 NH1 ARG B 100 O HOH B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 LEU B 3 O HOH C 518 3545 1.82 REMARK 500 O HOH C 462 O HOH C 474 4456 2.16 REMARK 500 O HOH B 482 O HOH C 516 4446 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 79 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 LEU C 148 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 4 108.26 72.68 REMARK 500 TYR B 52 58.09 -109.56 REMARK 500 LEU C 3 38.28 18.91 REMARK 500 TYR C 52 57.66 -111.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 O REMARK 620 2 LEU B 11 O 84.3 REMARK 620 3 HOH B 427 O 91.6 88.3 REMARK 620 4 ASP C 8 O 50.6 38.4 105.2 REMARK 620 5 LEU C 11 O 53.3 35.7 105.0 2.9 REMARK 620 6 HOH C 426 O 93.0 86.8 172.9 73.8 73.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 38 OE1 REMARK 620 2 GLU B 69 OE1 92.5 REMARK 620 3 HIS B 72 ND1 98.8 89.6 REMARK 620 4 TRS B 306 O3 88.5 87.6 172.3 REMARK 620 5 HOH B 412 O 90.2 176.9 91.6 90.8 REMARK 620 6 HOH B 451 O 172.3 94.0 85.4 87.6 83.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 69 OE2 REMARK 620 2 GLU B 122 OE1 98.0 REMARK 620 3 GLU B 151 OE2 162.0 80.9 REMARK 620 4 HIS B 154 ND1 85.8 93.5 112.2 REMARK 620 5 TRS B 306 O3 81.6 113.5 82.4 151.5 REMARK 620 6 TRS B 306 O2 112.6 68.0 50.2 154.9 52.5 REMARK 620 7 HOH B 451 O 102.8 158.1 81.3 81.5 76.5 109.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 38 OE1 REMARK 620 2 GLU C 69 OE1 93.4 REMARK 620 3 HIS C 72 ND1 98.3 92.5 REMARK 620 4 TRS C 303 O1 90.2 88.1 171.4 REMARK 620 5 HOH C 412 O 86.9 172.0 95.4 83.9 REMARK 620 6 HOH C 439 O 170.2 89.5 90.9 80.5 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE C 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 69 OE2 REMARK 620 2 GLU C 122 OE1 98.7 REMARK 620 3 GLU C 151 OE2 163.2 77.9 REMARK 620 4 HIS C 154 ND1 89.2 92.1 107.2 REMARK 620 5 TRS C 303 O1 85.0 113.1 81.4 154.6 REMARK 620 6 TRS C 303 O3 106.3 65.5 57.2 154.1 50.0 REMARK 620 7 HOH C 439 O 98.6 161.5 87.3 81.7 74.8 115.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE C 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG6 C 307 DBREF1 6ZMB B 2 201 UNP A0A179QS89_PSEPU DBREF2 6ZMB B A0A179QS89 2 201 DBREF1 6ZMB C 2 201 UNP A0A179QS89_PSEPU DBREF2 6ZMB C A0A179QS89 2 201 SEQRES 1 B 200 SER LEU ILE PRO GLU ILE ASP ALA PHE LEU GLY CYS PRO SEQRES 2 B 200 THR PRO ASP ALA TRP ILE GLU ALA ALA LEU ALA ASP GLN SEQRES 3 B 200 GLU THR LEU LEU ILE ASP HIS LYS ASN CYS GLU PHE LYS SEQRES 4 B 200 ALA ALA SER THR ALA LEU SER LEU ILE ALA LYS TYR ASN SEQRES 5 B 200 THR HIS LEU ASP LEU ILE ASN MET MET SER ARG LEU ALA SEQRES 6 B 200 ARG GLU GLU LEU VAL HIS HIS GLU GLN VAL LEU ARG LEU SEQRES 7 B 200 MET LYS ARG ARG GLY VAL PRO LEU ARG PRO VAL SER ALA SEQRES 8 B 200 GLY ARG TYR ALA SER GLY LEU ARG ARG LEU VAL ARG ALA SEQRES 9 B 200 HIS GLU PRO VAL LYS LEU VAL ASP THR LEU VAL VAL GLY SEQRES 10 B 200 ALA PHE ILE GLU ALA ARG SER CYS GLU ARG PHE ALA ALA SEQRES 11 B 200 LEU VAL PRO HIS LEU ASP GLU GLU LEU GLY ARG PHE TYR SEQRES 12 B 200 HIS GLY LEU LEU LYS SER GLU ALA ARG HIS TYR GLN GLY SEQRES 13 B 200 TYR LEU LYS LEU ALA HIS ASN TYR GLY ASP GLU ALA ASP SEQRES 14 B 200 ILE ALA ARG ARG VAL GLU LEU VAL ARG ALA ALA GLU MET SEQRES 15 B 200 GLU LEU ILE GLN SER PRO ASP GLN GLU LEU ARG PHE HIS SEQRES 16 B 200 SER GLY ILE PRO GLN SEQRES 1 C 200 SER LEU ILE PRO GLU ILE ASP ALA PHE LEU GLY CYS PRO SEQRES 2 C 200 THR PRO ASP ALA TRP ILE GLU ALA ALA LEU ALA ASP GLN SEQRES 3 C 200 GLU THR LEU LEU ILE ASP HIS LYS ASN CYS GLU PHE LYS SEQRES 4 C 200 ALA ALA SER THR ALA LEU SER LEU ILE ALA LYS TYR ASN SEQRES 5 C 200 THR HIS LEU ASP LEU ILE ASN MET MET SER ARG LEU ALA SEQRES 6 C 200 ARG GLU GLU LEU VAL HIS HIS GLU GLN VAL LEU ARG LEU SEQRES 7 C 200 MET LYS ARG ARG GLY VAL PRO LEU ARG PRO VAL SER ALA SEQRES 8 C 200 GLY ARG TYR ALA SER GLY LEU ARG ARG LEU VAL ARG ALA SEQRES 9 C 200 HIS GLU PRO VAL LYS LEU VAL ASP THR LEU VAL VAL GLY SEQRES 10 C 200 ALA PHE ILE GLU ALA ARG SER CYS GLU ARG PHE ALA ALA SEQRES 11 C 200 LEU VAL PRO HIS LEU ASP GLU GLU LEU GLY ARG PHE TYR SEQRES 12 C 200 HIS GLY LEU LEU LYS SER GLU ALA ARG HIS TYR GLN GLY SEQRES 13 C 200 TYR LEU LYS LEU ALA HIS ASN TYR GLY ASP GLU ALA ASP SEQRES 14 C 200 ILE ALA ARG ARG VAL GLU LEU VAL ARG ALA ALA GLU MET SEQRES 15 C 200 GLU LEU ILE GLN SER PRO ASP GLN GLU LEU ARG PHE HIS SEQRES 16 C 200 SER GLY ILE PRO GLN HET FE B 301 1 HET FE B 302 1 HET CL B 303 1 HET CL B 304 1 HET CA B 305 1 HET TRS B 306 8 HET PEG B 307 7 HET PG4 B 308 13 HET FE C 301 1 HET FE C 302 1 HET TRS C 303 8 HET PEG C 304 7 HET PGE C 305 10 HET PGE C 306 10 HET PG6 C 307 18 HETNAM FE FE (III) ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE HETSYN TRS TRIS BUFFER FORMUL 3 FE 4(FE 3+) FORMUL 5 CL 2(CL 1-) FORMUL 7 CA CA 2+ FORMUL 8 TRS 2(C4 H12 N O3 1+) FORMUL 9 PEG 2(C4 H10 O3) FORMUL 10 PG4 C8 H18 O5 FORMUL 15 PGE 2(C6 H14 O4) FORMUL 17 PG6 C12 H26 O6 FORMUL 18 HOH *217(H2 O) HELIX 1 AA1 GLU B 6 LEU B 11 1 6 HELIX 2 AA2 PRO B 16 ASP B 26 1 11 HELIX 3 AA3 ASP B 26 TYR B 52 1 27 HELIX 4 AA4 HIS B 55 GLY B 84 1 30 HELIX 5 AA5 ARG B 94 ARG B 101 1 8 HELIX 6 AA6 PRO B 108 VAL B 133 1 26 HELIX 7 AA7 PRO B 134 LEU B 136 5 3 HELIX 8 AA8 ASP B 137 GLY B 166 1 30 HELIX 9 AA9 ASP B 167 SER B 188 1 22 HELIX 10 AB1 GLU C 6 LEU C 11 1 6 HELIX 11 AB2 PRO C 16 ASP C 26 1 11 HELIX 12 AB3 ASP C 26 TYR C 52 1 27 HELIX 13 AB4 HIS C 55 ARG C 83 1 29 HELIX 14 AB5 ARG C 94 ARG C 101 1 8 HELIX 15 AB6 PRO C 108 VAL C 133 1 26 HELIX 16 AB7 PRO C 134 LEU C 136 5 3 HELIX 17 AB8 ASP C 137 GLY C 166 1 30 HELIX 18 AB9 ASP C 167 SER C 188 1 22 SHEET 1 AA1 2 PRO B 189 ASP B 190 0 SHEET 2 AA1 2 ILE B 199 PRO B 200 1 O ILE B 199 N ASP B 190 SHEET 1 AA2 2 PRO C 189 ASP C 190 0 SHEET 2 AA2 2 ILE C 199 PRO C 200 1 O ILE C 199 N ASP C 190 LINK O ASP B 8 CA CA B 305 1555 1555 2.34 LINK O LEU B 11 CA CA B 305 1555 1555 2.41 LINK OE1 GLU B 38 FE FE B 301 1555 1555 2.05 LINK OE1 GLU B 69 FE FE B 301 1555 1555 2.03 LINK OE2 GLU B 69 FE FE B 302 1555 1555 2.23 LINK ND1 HIS B 72 FE FE B 301 1555 1555 2.50 LINK OE1 GLU B 122 FE FE B 302 1555 1555 2.18 LINK OE2 GLU B 151 FE FE B 302 1555 1555 2.57 LINK ND1 HIS B 154 FE FE B 302 1555 1555 2.27 LINK FE FE B 301 O3 TRS B 306 1555 1555 2.01 LINK FE FE B 301 O HOH B 412 1555 1555 2.15 LINK FE FE B 301 O HOH B 451 1555 1555 2.15 LINK FE FE B 302 O3 TRS B 306 1555 1555 2.36 LINK FE FE B 302 O2 TRS B 306 1555 1555 2.52 LINK FE FE B 302 O HOH B 451 1555 1555 2.29 LINK CA CA B 305 O HOH B 427 1555 1555 2.28 LINK CA CA B 305 O ASP C 8 3455 1555 2.32 LINK CA CA B 305 O LEU C 11 3455 1555 2.34 LINK CA CA B 305 O HOH C 426 1555 3545 2.28 LINK OE1 GLU C 38 FE FE C 301 1555 1555 2.10 LINK OE1 GLU C 69 FE FE C 301 1555 1555 2.03 LINK OE2 GLU C 69 FE FE C 302 1555 1555 2.21 LINK ND1 HIS C 72 FE FE C 301 1555 1555 2.35 LINK OE1 GLU C 122 FE FE C 302 1555 1555 2.12 LINK OE2 GLU C 151 FE FE C 302 1555 1555 2.36 LINK ND1 HIS C 154 FE FE C 302 1555 1555 2.40 LINK FE FE C 301 O1 TRS C 303 1555 1555 2.19 LINK FE FE C 301 O HOH C 412 1555 1555 2.13 LINK FE FE C 301 O HOH C 439 1555 1555 2.03 LINK FE FE C 302 O1 TRS C 303 1555 1555 2.37 LINK FE FE C 302 O3 TRS C 303 1555 1555 2.67 LINK FE FE C 302 O HOH C 439 1555 1555 2.10 CISPEP 1 GLU B 107 PRO B 108 0 4.50 CISPEP 2 GLU C 107 PRO C 108 0 5.37 SITE 1 AC1 7 GLU B 38 GLU B 69 HIS B 72 FE B 302 SITE 2 AC1 7 TRS B 306 HOH B 412 HOH B 451 SITE 1 AC2 7 GLU B 69 GLU B 122 GLU B 151 HIS B 154 SITE 2 AC2 7 FE B 301 TRS B 306 HOH B 451 SITE 1 AC3 1 GLU B 21 SITE 1 AC4 2 ARG B 67 ARG C 67 SITE 1 AC5 6 ASP B 8 LEU B 11 HOH B 427 ASP C 8 SITE 2 AC5 6 LEU C 11 HOH C 426 SITE 1 AC6 12 CYS B 37 GLU B 38 ALA B 41 GLU B 69 SITE 2 AC6 12 GLU B 122 SER B 125 GLU B 151 HIS B 196 SITE 3 AC6 12 FE B 301 FE B 302 HOH B 412 HOH B 451 SITE 1 AC7 5 GLU B 74 ARG B 78 HOH B 407 ARG C 67 SITE 2 AC7 5 PGE C 305 SITE 1 AC8 3 SER B 43 SER B 47 SER C 47 SITE 1 AC9 7 GLU C 38 GLU C 69 HIS C 72 FE C 302 SITE 2 AC9 7 TRS C 303 HOH C 412 HOH C 439 SITE 1 AD1 7 GLU C 69 GLU C 122 GLU C 151 HIS C 154 SITE 2 AD1 7 FE C 301 TRS C 303 HOH C 439 SITE 1 AD2 13 CYS C 37 GLU C 38 ALA C 41 GLU C 69 SITE 2 AD2 13 GLU C 122 SER C 125 GLU C 151 HIS C 196 SITE 3 AD2 13 FE C 301 FE C 302 PG6 C 307 HOH C 412 SITE 4 AD2 13 HOH C 439 SITE 1 AD3 3 ARG B 64 GLU C 74 HOH C 419 SITE 1 AD4 4 PEG B 307 ARG C 67 VAL C 71 PGE C 306 SITE 1 AD5 5 GLN C 75 ARG C 142 PHE C 143 GLY C 146 SITE 2 AD5 5 PGE C 305 SITE 1 AD6 18 CYS C 37 THR C 44 GLY C 93 ARG C 94 SITE 2 AD6 18 TYR C 95 ALA C 96 ARG C 100 GLY C 118 SITE 3 AD6 18 ILE C 121 TYR C 158 ASP C 190 GLU C 192 SITE 4 AD6 18 ARG C 194 HIS C 196 SER C 197 TRS C 303 SITE 5 AD6 18 HOH C 401 HOH C 430 CRYST1 116.797 50.929 76.258 90.00 91.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008562 0.000000 0.000149 0.00000 SCALE2 0.000000 0.019635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013115 0.00000