HEADER OXYGEN STORAGE/OXYGEN TRANSPORT 04-JUL-20 6ZMX TITLE CRYSTAL STRUCTURE OF HEMOGLOBIN FROM TURKEY (MELEAGIRIS GALLOPOVA) TITLE 2 CRYSTALLIZED IN ORTHORHOMBIC FORM AT 1.4 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA-A; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ALPHA-A-GLOBIN,HEMOGLOBIN ALPHA-A CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN BETA CHAIN; COMPND 7 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MELEAGRIS GALLOPAVO; SOURCE 3 ORGANISM_COMMON: WILD TURKEY; SOURCE 4 ORGANISM_TAXID: 9103; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MELEAGRIS GALLOPAVO; SOURCE 7 ORGANISM_COMMON: WILD TURKEY; SOURCE 8 ORGANISM_TAXID: 9103 KEYWDS HEMOGLOBIN, TURKEY, HEME, MELEAGIRIS GALLOPOVA, ORTHORHOMBIC FORM, KEYWDS 2 OXYGEN TRANSPORT, OXYGEN STORAGE, OXYGEN STORAGE-OXYGEN TRANSPORT KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.PANDIAN,N.SHOBANA,S.S.SUNDARESAN,Y.SAYED,M.N.PONNUSWAMY REVDAT 4 31-JAN-24 6ZMX 1 REMARK REVDAT 3 16-JUN-21 6ZMX 1 JRNL REVDAT 2 05-AUG-20 6ZMX 1 HEADER KEYWDS LINK REVDAT 1 22-JUL-20 6ZMX 0 JRNL AUTH P.RAMESH,S.S.SUNDARESAN,N.SHOBANA,T.VINUCHAKKARAVARTHY, JRNL AUTH 2 K.SIVAKUMAR,S.YASIEN,M.N.G.PONNUSWAMY JRNL TITL STRUCTURAL STUDIES OF HEMOGLOBIN FROM TWO FLIGHTLESS BIRDS, JRNL TITL 2 OSTRICH AND TURKEY: INSIGHTS INTO THEIR DIFFERING JRNL TITL 3 OXYGEN-BINDING PROPERTIES. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 77 690 2021 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 33950023 JRNL DOI 10.1107/S2059798321003417 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 118898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 5918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.8350 - 4.3159 0.98 4004 222 0.1634 0.1778 REMARK 3 2 4.3159 - 3.4257 0.97 3786 223 0.1534 0.1790 REMARK 3 3 3.4257 - 2.9927 0.98 3756 233 0.1770 0.2208 REMARK 3 4 2.9927 - 2.7191 0.98 3777 216 0.1867 0.2255 REMARK 3 5 2.7191 - 2.5242 0.99 3824 182 0.1839 0.2205 REMARK 3 6 2.5242 - 2.3753 0.99 3805 187 0.1844 0.2221 REMARK 3 7 2.3753 - 2.2564 0.99 3774 194 0.1874 0.2096 REMARK 3 8 2.2564 - 2.1582 0.98 3740 196 0.1870 0.2254 REMARK 3 9 2.1582 - 2.0751 0.98 3747 192 0.1904 0.2308 REMARK 3 10 2.0751 - 2.0035 1.00 3777 208 0.2027 0.2372 REMARK 3 11 2.0035 - 1.9408 1.00 3820 165 0.2019 0.2319 REMARK 3 12 1.9408 - 1.8853 1.00 3803 183 0.1996 0.2294 REMARK 3 13 1.8853 - 1.8357 1.00 3794 197 0.2082 0.2244 REMARK 3 14 1.8357 - 1.7909 1.00 3751 217 0.2098 0.2308 REMARK 3 15 1.7909 - 1.7502 1.00 3765 199 0.2126 0.2430 REMARK 3 16 1.7502 - 1.7129 1.00 3783 183 0.2173 0.2389 REMARK 3 17 1.7129 - 1.6787 1.00 3778 185 0.2118 0.2529 REMARK 3 18 1.6787 - 1.6470 1.00 3751 219 0.2277 0.2439 REMARK 3 19 1.6470 - 1.6176 1.00 3735 229 0.2322 0.2536 REMARK 3 20 1.6176 - 1.5902 0.99 3713 204 0.2501 0.2881 REMARK 3 21 1.5902 - 1.5645 0.99 3758 214 0.2743 0.2978 REMARK 3 22 1.5645 - 1.5404 0.97 3661 201 0.2805 0.3069 REMARK 3 23 1.5404 - 1.5178 0.99 3755 182 0.3046 0.3067 REMARK 3 24 1.5178 - 1.4964 0.99 3725 184 0.3312 0.3213 REMARK 3 25 1.4964 - 1.4762 0.99 3743 192 0.3386 0.3660 REMARK 3 26 1.4762 - 1.4570 0.99 3725 175 0.3518 0.3375 REMARK 3 27 1.4570 - 1.4388 0.99 3752 187 0.3528 0.3481 REMARK 3 28 1.4388 - 1.4214 0.99 3734 173 0.3705 0.3841 REMARK 3 29 1.4214 - 1.4049 0.99 3742 187 0.3822 0.3967 REMARK 3 30 1.4049 - 1.3891 0.98 3702 189 0.3937 0.4222 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4920 REMARK 3 ANGLE : 0.905 6763 REMARK 3 CHIRALITY : 0.068 740 REMARK 3 PLANARITY : 0.006 842 REMARK 3 DIHEDRAL : 20.402 1707 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESSEQ 1:40 OR RESSEQ 42:67 REMARK 3 OR RESSEQ 69:81 OR RESSEQ 83 OR (RESID 85 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME OD2)) OR REMARK 3 RESSEQ 86:100 OR RESSEQ 102:104 OR (RESID REMARK 3 105 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB OR NAME CG OR NAME CD2 REMARK 3 OR NAME CE2 OR NAME CZ )) OR RESSEQ 106: REMARK 3 125 OR (RESID 126 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB OR NAME CG REMARK 3 OR NAME OD1)) OR RESSEQ 127:129 OR RESSEQ REMARK 3 131:138 OR RESSEQ 150)) REMARK 3 SELECTION : (CHAIN C AND (RESSEQ 1:40 OR RESSEQ 42:67 REMARK 3 OR RESSEQ 69:81 OR RESSEQ 83 OR (RESID 85 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME OD2)) OR REMARK 3 RESSEQ 86:100 OR RESSEQ 102:104 OR (RESID REMARK 3 105 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB OR NAME CG OR NAME CD2 REMARK 3 OR NAME CE2 OR NAME CZ )) OR RESSEQ 106: REMARK 3 125 OR (RESID 126 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB OR NAME CG REMARK 3 OR NAME OD1)) OR RESSEQ 127:129 OR RESSEQ REMARK 3 131:138 OR RESSEQ 150)) REMARK 3 ATOM PAIRS NUMBER : 1194 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN D AND (RESSEQ 1:13 OR (RESID 14 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD2)) OR REMARK 3 RESSEQ 15:31 OR (RESID 32 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD1)) OR RESSEQ 33:37 OR REMARK 3 RESSEQ 39:93 OR (RESID 94 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME OD1)) OR RESSEQ 95:107 OR REMARK 3 (RESID 108 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 OD1)) OR RESSEQ 110:111 OR RESSEQ 113:116 REMARK 3 OR RESSEQ 118:125 OR RESSEQ 127:142 OR REMARK 3 RESSEQ 144:146 OR RESSEQ 150)) REMARK 3 SELECTION : (CHAIN B AND (RESSEQ 1:13 OR (RESID 14 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD2)) OR REMARK 3 RESSEQ 15:31 OR (RESID 32 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME CD1)) OR RESSEQ 33:37 OR REMARK 3 RESSEQ 39:93 OR (RESID 94 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME CG OR NAME OD1)) OR RESSEQ 95:107 OR REMARK 3 (RESID 108 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 OD1)) OR RESSEQ 110:111 OR RESSEQ 113:116 REMARK 3 OR RESSEQ 118:125 OR RESSEQ 127:142 OR REMARK 3 RESSEQ 144:146 OR RESSEQ 150)) REMARK 3 ATOM PAIRS NUMBER : 1272 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 118908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.389 REMARK 200 RESOLUTION RANGE LOW (A) : 60.835 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FAW REMARK 200 REMARK 200 REMARK: BLOCK REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% OF PEG 3350 IN 50MM PHOSPHATE REMARK 280 BUFFER AT PH7.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.27000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.27000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 139 REMARK 465 TYR A 140 REMARK 465 ARG A 141 REMARK 465 LYS C 139 REMARK 465 TYR C 140 REMARK 465 ARG C 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 318 O HOH B 374 2.18 REMARK 500 O HOH D 311 O HOH D 396 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 320 O HOH B 398 3544 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 58 N PRO B 58 CA 0.195 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 58 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG D 40 CG - CD - NE ANGL. DEV. = -21.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 77 79.44 -153.08 REMARK 500 SER B 119 -135.26 51.33 REMARK 500 HIS C 113 58.33 -140.20 REMARK 500 ASN D 77 79.13 -152.66 REMARK 500 SER D 119 -136.16 52.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS B 117 -10.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 201 NA 91.1 REMARK 620 3 HEM A 201 NB 92.4 87.6 REMARK 620 4 HEM A 201 NC 93.5 175.3 93.6 REMARK 620 5 HEM A 201 ND 93.7 89.8 173.4 88.5 REMARK 620 6 HOH A 303 O 178.3 90.6 87.9 84.9 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 201 NA 90.4 REMARK 620 3 HEM B 201 NB 91.4 90.5 REMARK 620 4 HEM B 201 NC 94.0 175.4 90.8 REMARK 620 5 HEM B 201 ND 93.1 88.2 175.4 90.2 REMARK 620 6 HOH B 333 O 176.0 93.1 86.6 82.6 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 201 NA 91.8 REMARK 620 3 HEM C 201 NB 92.0 89.2 REMARK 620 4 HEM C 201 NC 94.6 173.4 92.2 REMARK 620 5 HEM C 201 ND 94.7 89.8 173.3 88.1 REMARK 620 6 HOH C 307 O 175.4 92.6 86.9 81.0 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS D 82 O REMARK 620 2 ALA D 140 O 131.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 201 NA 88.4 REMARK 620 3 HEM D 201 NB 92.9 90.6 REMARK 620 4 HEM D 201 NC 94.5 177.1 88.9 REMARK 620 5 HEM D 201 ND 91.6 89.4 175.4 90.8 REMARK 620 6 HOH D 325 O 179.3 91.0 87.4 86.1 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K8B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TURKEY (MELEAGIRIS GALLOPOVA)HEMOGLOBIN DBREF 6ZMX A 1 141 UNP P81023 HBA_MELGA 2 142 DBREF 6ZMX B 1 146 UNP P84479 P84479_MELGA 1 146 DBREF 6ZMX C 1 141 UNP P81023 HBA_MELGA 2 142 DBREF 6ZMX D 1 146 UNP P84479 P84479_MELGA 1 146 SEQRES 1 A 141 VAL LEU SER ALA ALA ASP LYS ASN ASN VAL LYS GLY ILE SEQRES 2 A 141 PHE THR LYS ILE ALA GLY HIS ALA GLU GLU TYR GLY ALA SEQRES 3 A 141 GLU THR LEU GLU ARG MET PHE ILE THR TYR PRO PRO THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 ALA GLN ILE LYS GLY HIS GLY LYS LYS VAL VAL ALA ALA SEQRES 6 A 141 LEU ILE GLU ALA ALA ASN HIS ILE ASP ASP ILE ALA GLY SEQRES 7 A 141 THR LEU SER LYS LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU GLY GLN CYS SEQRES 9 A 141 PHE LEU VAL VAL VAL ALA ILE HIS HIS PRO ALA ALA LEU SEQRES 10 A 141 THR PRO GLU VAL HIS ALA SER LEU ASP LYS PHE LEU CYS SEQRES 11 A 141 ALA VAL GLY THR VAL LEU THR ALA LYS TYR ARG SEQRES 1 B 146 VAL HIS TRP SER ALA GLU GLU LYS GLN LEU ILE THR GLY SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ALA ASP CYS GLY ALA GLU SEQRES 3 B 146 ALA LEU ALA ARG LEU LEU ILE VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE ALA SER PHE GLY ASN LEU SER SER PRO THR SEQRES 5 B 146 ALA ILE LEU GLY ASN PRO MET VAL ARG ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU THR SER PHE GLY ASP ALA VAL LYS ASN LEU SEQRES 7 B 146 ASP ASN ILE LYS ASN THR PHE SER GLN LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASP ILE LEU ILE ILE VAL LEU ALA ALA HIS SEQRES 10 B 146 PHE SER LYS ASP PHE THR PRO GLU CYS GLN ALA ALA TRP SEQRES 11 B 146 GLN LYS LEU VAL ARG VAL VAL ALA HIS ALA LEU ALA ARG SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER ALA ALA ASP LYS ASN ASN VAL LYS GLY ILE SEQRES 2 C 141 PHE THR LYS ILE ALA GLY HIS ALA GLU GLU TYR GLY ALA SEQRES 3 C 141 GLU THR LEU GLU ARG MET PHE ILE THR TYR PRO PRO THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 141 ALA GLN ILE LYS GLY HIS GLY LYS LYS VAL VAL ALA ALA SEQRES 6 C 141 LEU ILE GLU ALA ALA ASN HIS ILE ASP ASP ILE ALA GLY SEQRES 7 C 141 THR LEU SER LYS LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU GLY GLN CYS SEQRES 9 C 141 PHE LEU VAL VAL VAL ALA ILE HIS HIS PRO ALA ALA LEU SEQRES 10 C 141 THR PRO GLU VAL HIS ALA SER LEU ASP LYS PHE LEU CYS SEQRES 11 C 141 ALA VAL GLY THR VAL LEU THR ALA LYS TYR ARG SEQRES 1 D 146 VAL HIS TRP SER ALA GLU GLU LYS GLN LEU ILE THR GLY SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ALA ASP CYS GLY ALA GLU SEQRES 3 D 146 ALA LEU ALA ARG LEU LEU ILE VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE ALA SER PHE GLY ASN LEU SER SER PRO THR SEQRES 5 D 146 ALA ILE LEU GLY ASN PRO MET VAL ARG ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU THR SER PHE GLY ASP ALA VAL LYS ASN LEU SEQRES 7 D 146 ASP ASN ILE LYS ASN THR PHE SER GLN LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASP ILE LEU ILE ILE VAL LEU ALA ALA HIS SEQRES 10 D 146 PHE SER LYS ASP PHE THR PRO GLU CYS GLN ALA ALA TRP SEQRES 11 D 146 GLN LYS LEU VAL ARG VAL VAL ALA HIS ALA LEU ALA ARG SEQRES 12 D 146 LYS TYR HIS HET HEM A 201 43 HET HEM B 201 43 HET HEM C 201 43 HET HEM D 201 43 HET NA D 202 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM NA SODIUM ION HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 9 NA NA 1+ FORMUL 10 HOH *487(H2 O) HELIX 1 AA1 SER A 3 ALA A 18 1 16 HELIX 2 AA2 HIS A 20 TYR A 36 1 17 HELIX 3 AA3 PRO A 37 PHE A 43 5 7 HELIX 4 AA4 SER A 52 HIS A 72 1 21 HELIX 5 AA5 ASP A 75 HIS A 89 1 15 HELIX 6 AA6 PRO A 95 HIS A 113 1 19 HELIX 7 AA7 THR A 118 THR A 137 1 20 HELIX 8 AA8 SER B 4 GLY B 16 1 13 HELIX 9 AA9 ASN B 19 TYR B 35 1 17 HELIX 10 AB1 PRO B 36 GLY B 46 5 11 HELIX 11 AB2 SER B 50 ASN B 57 1 8 HELIX 12 AB3 ASN B 57 LYS B 76 1 20 HELIX 13 AB4 ASN B 80 PHE B 85 1 6 HELIX 14 AB5 PHE B 85 LYS B 95 1 11 HELIX 15 AB6 PRO B 100 SER B 119 1 20 HELIX 16 AB7 LYS B 120 PHE B 122 5 3 HELIX 17 AB8 THR B 123 ARG B 143 1 21 HELIX 18 AB9 LYS B 144 HIS B 146 5 3 HELIX 19 AC1 SER C 3 ALA C 18 1 16 HELIX 20 AC2 HIS C 20 TYR C 36 1 17 HELIX 21 AC3 PRO C 37 PHE C 43 5 7 HELIX 22 AC4 SER C 52 HIS C 72 1 21 HELIX 23 AC5 ASP C 75 HIS C 89 1 15 HELIX 24 AC6 PRO C 95 HIS C 113 1 19 HELIX 25 AC7 THR C 118 THR C 137 1 20 HELIX 26 AC8 SER D 4 GLY D 16 1 13 HELIX 27 AC9 ASN D 19 TYR D 35 1 17 HELIX 28 AD1 PRO D 36 GLY D 46 5 11 HELIX 29 AD2 SER D 50 ASN D 57 1 8 HELIX 30 AD3 ASN D 57 LYS D 76 1 20 HELIX 31 AD4 ASN D 80 PHE D 85 1 6 HELIX 32 AD5 PHE D 85 LYS D 95 1 11 HELIX 33 AD6 PRO D 100 SER D 119 1 20 HELIX 34 AD7 LYS D 120 PHE D 122 5 3 HELIX 35 AD8 THR D 123 ALA D 142 1 20 HELIX 36 AD9 ARG D 143 HIS D 146 5 4 LINK NE2 HIS A 87 FE HEM A 201 1555 1555 2.18 LINK FE HEM A 201 O HOH A 303 1555 1555 2.31 LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.18 LINK FE HEM B 201 O HOH B 333 1555 1555 2.32 LINK NE2 HIS C 87 FE HEM C 201 1555 1555 2.19 LINK FE HEM C 201 O HOH C 307 1555 1555 2.30 LINK O LYS D 82 NA NA D 202 1555 1555 2.76 LINK NE2 HIS D 92 FE HEM D 201 1555 1555 2.16 LINK O ALA D 140 NA NA D 202 1555 1555 2.85 LINK FE HEM D 201 O HOH D 325 1555 1555 2.18 SITE 1 AC1 17 TYR A 42 PHE A 43 HIS A 45 HIS A 58 SITE 2 AC1 17 LYS A 61 LEU A 83 LEU A 86 HIS A 87 SITE 3 AC1 17 LEU A 91 ASN A 97 PHE A 98 LEU A 101 SITE 4 AC1 17 LEU A 136 HOH A 301 HOH A 303 HOH A 317 SITE 5 AC1 17 HOH A 328 SITE 1 AC2 15 PHE B 41 PHE B 42 HIS B 63 LYS B 66 SITE 2 AC2 15 PHE B 71 LEU B 88 HIS B 92 LEU B 96 SITE 3 AC2 15 ASN B 102 LEU B 106 LYS B 120 LEU B 141 SITE 4 AC2 15 HOH B 333 HOH B 345 HOH B 349 SITE 1 AC3 20 TYR C 42 PHE C 43 HIS C 45 PHE C 46 SITE 2 AC3 20 HIS C 58 LYS C 61 LEU C 86 HIS C 87 SITE 3 AC3 20 LEU C 91 VAL C 93 ASN C 97 PHE C 98 SITE 4 AC3 20 LEU C 101 LEU C 136 HOH C 301 HOH C 307 SITE 5 AC3 20 HOH C 308 HOH C 330 HOH C 361 HOH C 363 SITE 1 AC4 13 THR D 38 PHE D 41 PHE D 42 HIS D 63 SITE 2 AC4 13 SER D 70 HIS D 92 LEU D 96 ASN D 102 SITE 3 AC4 13 PHE D 103 LEU D 106 LYS D 120 LEU D 141 SITE 4 AC4 13 HOH D 325 SITE 1 AC5 5 LYS D 82 PHE D 85 SER D 86 ALA D 140 SITE 2 AC5 5 ARG D 143 CRYST1 79.760 82.140 90.540 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011045 0.00000