HEADER GENE REGULATION 07-JUL-20 6ZOP TITLE STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF PIGGYMAC, A DOMESTICATED TITLE 2 PIGGYBAC TRANSPOSASE INVOLVED IN PROGRAMMED GENOME REARRANGEMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAMECIUM TETRAURELIA; SOURCE 3 ORGANISM_TAXID: 5888; SOURCE 4 GENE: GSPATT00016627001; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ZINC-FINGER, TRANSPOSASE, PIGGYMAC, CYSTEINE-RICHE DOMAIN, GENE KEYWDS 2 REGULATION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR L.BESSA,M.GUERINEAU,S.MORIAU,E.LESCOP,F.BONTEMS,N.MATHY,E.GUITTET, AUTHOR 2 J.BISCHEROUR,M.BETERMIER,N.MORELLET REVDAT 2 31-JAN-24 6ZOP 1 REMARK REVDAT 1 16-JUN-21 6ZOP 0 JRNL AUTH M.GUERINEAU,L.BESSA,S.MORIAU,E.LESCOP,F.BONTEMS,N.MATHY, JRNL AUTH 2 E.GUITTET,J.BISCHEROUR,M.BETERMIER,N.MORELLET JRNL TITL THE UNUSUAL STRUCTURE OF THE PIGGYMAC CYSTEINE-RICH DOMAIN JRNL TITL 2 REVEALS ZINC FINGER DIVERSITY IN PIGGYBAC-RELATED JRNL TITL 3 TRANSPOSASES. JRNL REF MOB DNA V. 12 12 2021 JRNL REFN ISSN 1759-8753 JRNL PMID 33926516 JRNL DOI 10.1186/S13100-021-00240-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZOP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109824. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 25 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 400 UM U-15N U-13C CYSTEINE-RICH REMARK 210 DOMAIN OF PIGGYMAC, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCACO; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D HN(COCA)CB; 3D REMARK 210 HCCH-TOCSY; 3D HCCCONH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 8 64.33 -105.38 REMARK 500 1 GLU A 23 -54.33 -128.06 REMARK 500 1 PHE A 67 38.46 -94.96 REMARK 500 2 SER A 5 71.36 -175.07 REMARK 500 2 GLU A 23 -41.13 -133.77 REMARK 500 2 THR A 58 76.92 -118.78 REMARK 500 2 ASP A 69 90.11 -67.39 REMARK 500 2 LYS A 76 41.62 39.44 REMARK 500 3 ASN A 33 -168.49 -113.93 REMARK 500 3 THR A 58 75.53 -154.51 REMARK 500 3 PHE A 67 39.41 -94.49 REMARK 500 3 LYS A 74 64.91 -101.96 REMARK 500 3 ARG A 82 -40.39 -131.07 REMARK 500 4 SER A 5 70.32 -117.60 REMARK 500 4 PRO A 16 -174.79 -69.73 REMARK 500 4 PHE A 67 38.90 -95.26 REMARK 500 4 ASP A 69 -72.87 -76.92 REMARK 500 4 ASP A 73 -74.96 -128.74 REMARK 500 4 LYS A 76 60.04 -109.36 REMARK 500 5 PRO A 2 92.18 -69.68 REMARK 500 5 PRO A 6 -172.29 -69.76 REMARK 500 5 ALA A 12 105.48 -174.78 REMARK 500 5 GLU A 23 -61.63 -124.46 REMARK 500 5 LYS A 74 73.45 -109.03 REMARK 500 5 LYS A 76 -76.56 -77.26 REMARK 500 6 PRO A 2 88.79 -69.82 REMARK 500 6 SER A 9 -172.78 -62.66 REMARK 500 6 LYS A 13 75.43 -106.54 REMARK 500 6 GLU A 23 -61.79 -132.29 REMARK 500 6 THR A 58 79.73 -151.24 REMARK 500 6 PHE A 67 39.03 -94.56 REMARK 500 6 PHE A 70 176.15 -56.78 REMARK 500 6 LYS A 74 -60.65 -128.70 REMARK 500 6 LYS A 76 58.15 -115.65 REMARK 500 7 SER A 5 69.26 -164.23 REMARK 500 7 PHE A 8 135.51 -172.08 REMARK 500 7 PHE A 67 39.88 -93.85 REMARK 500 7 MET A 68 -70.10 -51.21 REMARK 500 7 ARG A 82 -60.19 -125.71 REMARK 500 8 SER A 5 73.28 -167.54 REMARK 500 8 PRO A 6 -171.53 -69.73 REMARK 500 8 PHE A 11 106.31 64.74 REMARK 500 8 ALA A 12 172.66 -53.75 REMARK 500 8 LYS A 13 36.50 -98.34 REMARK 500 8 ILE A 14 143.59 -175.84 REMARK 500 8 PHE A 67 39.07 -94.65 REMARK 500 8 ASP A 69 -74.30 -54.72 REMARK 500 8 PHE A 70 -175.89 -67.32 REMARK 500 8 LEU A 72 -176.20 -68.97 REMARK 500 8 LYS A 76 105.16 -51.15 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 17 ND1 REMARK 620 2 CYS A 39 SG 113.4 REMARK 620 3 CYS A 42 SG 109.4 116.0 REMARK 620 4 HIS A 65 NE2 93.3 113.6 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 100 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 28 SG REMARK 620 2 CYS A 31 SG 116.1 REMARK 620 3 CYS A 53 SG 109.0 108.9 REMARK 620 4 CYS A 61 SG 107.7 107.5 107.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34527 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF PIGGYMAC, A DOMESTICATED REMARK 900 PIGGYBAC TRANSPOSASE INVOLVED IN PROGRAMMED GENOME REARRANGEMENTS DBREF 6ZOP A 8 84 UNP A0DFJ7 A0DFJ7_PARTE 692 768 SEQADV 6ZOP GLY A 1 UNP A0DFJ7 EXPRESSION TAG SEQADV 6ZOP PRO A 2 UNP A0DFJ7 EXPRESSION TAG SEQADV 6ZOP LEU A 3 UNP A0DFJ7 EXPRESSION TAG SEQADV 6ZOP GLY A 4 UNP A0DFJ7 EXPRESSION TAG SEQADV 6ZOP SER A 5 UNP A0DFJ7 EXPRESSION TAG SEQADV 6ZOP PRO A 6 UNP A0DFJ7 EXPRESSION TAG SEQADV 6ZOP GLU A 7 UNP A0DFJ7 EXPRESSION TAG SEQRES 1 A 84 GLY PRO LEU GLY SER PRO GLU PHE SER TYR PHE ALA LYS SEQRES 2 A 84 ILE GLN PRO HIS THR PHE ILE GLU GLY GLU GLU ILE VAL SEQRES 3 A 84 LYS CYS SER GLU CYS GLY ASN GLU THR LYS VAL PHE CYS SEQRES 4 A 84 GLN GLU CYS THR ILE LEU LYS ALA GLU VAL VAL GLY LEU SEQRES 5 A 84 CYS HIS GLU LYS ASP THR ILE LYS CYS GLN ARG PHE HIS SEQRES 6 A 84 GLU PHE MET ASP PHE GLU LEU ASP LYS ASN LYS GLU VAL SEQRES 7 A 84 ILE ASP LYS ARG LYS GLY HET ZN A 100 1 HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 GLN A 40 ALA A 47 1 8 HELIX 2 AA2 CYS A 53 ILE A 59 5 7 HELIX 3 AA3 LYS A 60 PHE A 67 1 8 SHEET 1 AA1 2 PHE A 19 LYS A 27 0 SHEET 2 AA1 2 GLU A 34 CYS A 39 -1 O PHE A 38 N ILE A 20 LINK ND1 HIS A 17 ZN ZN A 101 1555 1555 2.00 LINK SG CYS A 28 ZN ZN A 100 1555 1555 2.31 LINK SG CYS A 31 ZN ZN A 100 1555 1555 2.31 LINK SG CYS A 39 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 42 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 53 ZN ZN A 100 1555 1555 2.34 LINK SG CYS A 61 ZN ZN A 100 1555 1555 2.36 LINK NE2 HIS A 65 ZN ZN A 101 1555 1555 2.00 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL CONECT 248 1330 CONECT 426 1329 CONECT 462 1329 CONECT 580 1330 CONECT 622 1330 CONECT 789 1329 CONECT 920 1329 CONECT 995 1330 CONECT 1329 426 462 789 920 CONECT 1330 248 580 622 995 MASTER 169 0 2 3 2 0 0 6 676 1 10 7 END