HEADER IMMUNE SYSTEM 09-JUL-20 6ZPP TITLE G7941: A VIRULENCE FACTOR FROM DRECHMARIA CONIOSPORA COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRULENCE FACTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VIRULENCE FACTOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DRECHMERIA CONIOSPORA; SOURCE 3 ORGANISM_TAXID: 98403; SOURCE 4 GENE: DCS_06842; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRULENCE FACTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.LEONE,A.ROUSSEL,C.ZIMBERGER REVDAT 2 21-DEC-22 6ZPP 1 COMPND REMARK SEQADV SEQRES REVDAT 1 19-JAN-22 6ZPP 0 JRNL AUTH P.LEONE,C.ZIMBERGER,A.ROUSSEL,J.EWBANK JRNL TITL CRYSTAL STRUCTURE OF A VIRULENCE FACTOR FROM DRECHMARIA JRNL TITL 2 CONIOSPORA, A C. ELEGANS PATHOGEN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6400 - 3.1200 1.00 2861 153 0.1677 0.1691 REMARK 3 2 3.1200 - 2.4800 1.00 2784 149 0.1697 0.1844 REMARK 3 3 2.4800 - 2.1600 1.00 2785 129 0.1636 0.1978 REMARK 3 4 2.1600 - 1.9700 1.00 2733 170 0.1740 0.2430 REMARK 3 5 1.9700 - 1.8300 1.00 2778 133 0.1925 0.2456 REMARK 3 6 1.8200 - 1.7200 1.00 2723 146 0.2267 0.2669 REMARK 3 7 1.7200 - 1.6300 1.00 2739 126 0.2469 0.2916 REMARK 3 8 1.6300 - 1.5600 1.00 2709 137 0.2891 0.3273 REMARK 3 9 1.5600 - 1.5000 0.98 2700 126 0.3306 0.3678 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:6) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7111 -4.9389 -9.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.3408 T22: 0.4283 REMARK 3 T33: 0.2805 T12: -0.0721 REMARK 3 T13: -0.0363 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 9.3043 L22: 2.6489 REMARK 3 L33: 8.3113 L12: 1.1493 REMARK 3 L13: 0.4107 L23: -0.9627 REMARK 3 S TENSOR REMARK 3 S11: -0.1350 S12: 1.4402 S13: -0.5719 REMARK 3 S21: -1.1121 S22: 0.2688 S23: 0.9939 REMARK 3 S31: 0.6016 S32: -1.1947 S33: 0.0195 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 7:17) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0685 -5.0715 2.1716 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.1126 REMARK 3 T33: 0.1619 T12: 0.0031 REMARK 3 T13: 0.0174 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.6093 L22: 3.8006 REMARK 3 L33: 8.5146 L12: 1.3830 REMARK 3 L13: 4.1149 L23: -1.7147 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -0.0318 S13: -0.0246 REMARK 3 S21: 0.0031 S22: 0.0697 S23: 0.0534 REMARK 3 S31: 0.0174 S32: -0.0788 S33: -0.1303 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 18:25) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7536 -8.7385 15.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.2895 T22: 0.2926 REMARK 3 T33: 0.2186 T12: -0.0159 REMARK 3 T13: 0.0337 T23: 0.0679 REMARK 3 L TENSOR REMARK 3 L11: 8.3394 L22: 9.1619 REMARK 3 L33: 2.9883 L12: -2.5490 REMARK 3 L13: 4.7136 L23: -2.6768 REMARK 3 S TENSOR REMARK 3 S11: 0.0938 S12: -0.3111 S13: -0.8498 REMARK 3 S21: 0.1703 S22: 0.2444 S23: 0.3754 REMARK 3 S31: 1.1488 S32: -0.2655 S33: -0.2325 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 26:36) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8211 -11.0510 20.0644 REMARK 3 T TENSOR REMARK 3 T11: 0.5607 T22: 0.3918 REMARK 3 T33: 0.3262 T12: 0.0251 REMARK 3 T13: -0.0612 T23: 0.0943 REMARK 3 L TENSOR REMARK 3 L11: 8.2961 L22: 9.7110 REMARK 3 L33: 6.4033 L12: -1.0997 REMARK 3 L13: -4.9624 L23: 1.5548 REMARK 3 S TENSOR REMARK 3 S11: -0.1960 S12: -0.2163 S13: -0.5027 REMARK 3 S21: 1.0242 S22: 0.1738 S23: 0.4342 REMARK 3 S31: 1.3132 S32: 0.2422 S33: 0.0240 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 37:51) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3702 -6.0701 5.6051 REMARK 3 T TENSOR REMARK 3 T11: 0.1150 T22: 0.1614 REMARK 3 T33: 0.1566 T12: 0.0308 REMARK 3 T13: 0.0013 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 3.6659 L22: 1.4489 REMARK 3 L33: 2.3324 L12: 0.0776 REMARK 3 L13: 1.4806 L23: -1.2945 REMARK 3 S TENSOR REMARK 3 S11: 0.1604 S12: -0.0217 S13: -0.2865 REMARK 3 S21: -0.0061 S22: -0.0044 S23: -0.0838 REMARK 3 S31: 0.2811 S32: 0.4248 S33: -0.1327 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 52:57) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4350 -0.4892 -8.8955 REMARK 3 T TENSOR REMARK 3 T11: 0.2153 T22: 0.2907 REMARK 3 T33: 0.2238 T12: -0.0082 REMARK 3 T13: 0.0183 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.8639 L22: 2.7051 REMARK 3 L33: 2.1432 L12: -3.0902 REMARK 3 L13: 2.6829 L23: -2.3871 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: 1.2606 S13: -0.1930 REMARK 3 S21: -0.7376 S22: 0.0675 S23: -0.6312 REMARK 3 S31: 0.4501 S32: 0.5989 S33: 0.0530 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 58:61) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5871 1.8882 -16.4102 REMARK 3 T TENSOR REMARK 3 T11: 0.5860 T22: 1.2542 REMARK 3 T33: 0.1619 T12: 0.0297 REMARK 3 T13: 0.0809 T23: 0.4661 REMARK 3 L TENSOR REMARK 3 L11: 0.5604 L22: 1.5370 REMARK 3 L33: 6.3055 L12: 0.8367 REMARK 3 L13: -0.8972 L23: -2.5321 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.8535 S13: 0.0225 REMARK 3 S21: -1.0028 S22: -0.1739 S23: -0.2856 REMARK 3 S31: 1.5748 S32: 0.5272 S33: 0.1413 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 62:68) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6163 4.2172 -6.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.4501 T22: 0.3275 REMARK 3 T33: 0.4137 T12: 0.0167 REMARK 3 T13: -0.1817 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.2265 L22: 2.7328 REMARK 3 L33: 4.0013 L12: 0.4192 REMARK 3 L13: -0.5061 L23: -3.3116 REMARK 3 S TENSOR REMARK 3 S11: -0.4839 S12: 0.2870 S13: 0.8191 REMARK 3 S21: -1.0039 S22: 0.0101 S23: 1.6787 REMARK 3 S31: -0.8402 S32: -1.1655 S33: 0.3343 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 69:76) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4924 2.7971 4.5196 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.1518 REMARK 3 T33: 0.1672 T12: 0.0050 REMARK 3 T13: 0.0163 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 6.0299 L22: 2.8018 REMARK 3 L33: 9.0499 L12: 0.1045 REMARK 3 L13: 5.3457 L23: -3.3346 REMARK 3 S TENSOR REMARK 3 S11: -0.0967 S12: -0.2443 S13: -0.0656 REMARK 3 S21: 0.1739 S22: 0.0435 S23: 0.2661 REMARK 3 S31: -0.1098 S32: -0.5634 S33: 0.0172 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 77:82) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9187 3.0071 14.3981 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.3265 REMARK 3 T33: 0.1804 T12: 0.0677 REMARK 3 T13: -0.0086 T23: -0.0819 REMARK 3 L TENSOR REMARK 3 L11: 3.1159 L22: 8.4425 REMARK 3 L33: 1.4490 L12: 1.1276 REMARK 3 L13: -0.9491 L23: -2.1427 REMARK 3 S TENSOR REMARK 3 S11: -0.2943 S12: -1.1509 S13: 0.1861 REMARK 3 S21: 0.3342 S22: 0.0567 S23: 0.4499 REMARK 3 S31: -0.6277 S32: -0.8816 S33: 0.0959 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 83:88) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5170 0.5889 22.4398 REMARK 3 T TENSOR REMARK 3 T11: 0.2527 T22: 0.5263 REMARK 3 T33: 0.1665 T12: 0.0666 REMARK 3 T13: 0.0240 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 0.8123 L22: 0.5990 REMARK 3 L33: 4.5228 L12: 0.5965 REMARK 3 L13: 1.6864 L23: 0.8523 REMARK 3 S TENSOR REMARK 3 S11: -0.2124 S12: -1.3423 S13: 0.4161 REMARK 3 S21: 0.6251 S22: 0.1246 S23: 0.1163 REMARK 3 S31: -0.5610 S32: 0.1495 S33: 0.1903 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 89:93) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4013 -4.6491 27.2744 REMARK 3 T TENSOR REMARK 3 T11: 0.5241 T22: 0.7190 REMARK 3 T33: 0.2310 T12: 0.0313 REMARK 3 T13: -0.0396 T23: 0.0996 REMARK 3 L TENSOR REMARK 3 L11: 4.1955 L22: 6.6401 REMARK 3 L33: 2.0055 L12: -2.0786 REMARK 3 L13: 4.5762 L23: 0.7821 REMARK 3 S TENSOR REMARK 3 S11: 0.7996 S12: -0.4398 S13: -0.4935 REMARK 3 S21: 0.3518 S22: -0.7344 S23: 0.0542 REMARK 3 S31: 0.2100 S32: -0.6847 S33: -0.1216 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 94:98) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6176 -7.1528 25.2357 REMARK 3 T TENSOR REMARK 3 T11: 0.4114 T22: 0.7769 REMARK 3 T33: 0.4548 T12: 0.1410 REMARK 3 T13: -0.0458 T23: 0.2063 REMARK 3 L TENSOR REMARK 3 L11: 6.4452 L22: 6.4856 REMARK 3 L33: 4.3205 L12: -4.1878 REMARK 3 L13: -4.7463 L23: 1.3207 REMARK 3 S TENSOR REMARK 3 S11: 0.2875 S12: 0.2160 S13: -1.1770 REMARK 3 S21: -0.2800 S22: -0.7879 S23: -0.9669 REMARK 3 S31: 1.3897 S32: 1.3039 S33: 0.5460 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 99:110) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9616 -0.2510 15.0869 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.3379 REMARK 3 T33: 0.1893 T12: 0.0096 REMARK 3 T13: -0.0240 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 7.2738 L22: 7.7765 REMARK 3 L33: 3.8490 L12: -4.7013 REMARK 3 L13: 5.1038 L23: -4.3636 REMARK 3 S TENSOR REMARK 3 S11: -0.3517 S12: -0.1672 S13: 0.1640 REMARK 3 S21: 0.6968 S22: -0.2275 S23: -0.7760 REMARK 3 S31: -0.3163 S32: 1.0908 S33: 0.5399 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 111:130) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6290 7.0161 -1.4484 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.1215 REMARK 3 T33: 0.1177 T12: -0.0171 REMARK 3 T13: 0.0040 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 5.3742 L22: 4.8288 REMARK 3 L33: 4.4984 L12: -2.2748 REMARK 3 L13: 1.9428 L23: -3.3833 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: 0.5103 S13: 0.2633 REMARK 3 S21: -0.2202 S22: -0.1181 S23: 0.1019 REMARK 3 S31: 0.0814 S32: 0.2489 S33: 0.0546 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 131:139) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6456 12.8543 1.6381 REMARK 3 T TENSOR REMARK 3 T11: 0.1201 T22: 0.1366 REMARK 3 T33: 0.1864 T12: 0.0165 REMARK 3 T13: 0.0206 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 6.6710 L22: 4.4762 REMARK 3 L33: 8.8436 L12: -3.0601 REMARK 3 L13: 6.7757 L23: -1.9432 REMARK 3 S TENSOR REMARK 3 S11: -0.1416 S12: -0.0494 S13: 0.0300 REMARK 3 S21: 0.3381 S22: 0.1540 S23: 0.0938 REMARK 3 S31: -0.3464 S32: -0.0931 S33: -0.0024 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 140:145) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8097 11.1977 10.6233 REMARK 3 T TENSOR REMARK 3 T11: 0.4376 T22: 0.2045 REMARK 3 T33: 0.1970 T12: 0.0395 REMARK 3 T13: -0.0989 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 7.1724 L22: 2.0835 REMARK 3 L33: 2.0784 L12: 1.2050 REMARK 3 L13: 2.7236 L23: -0.9117 REMARK 3 S TENSOR REMARK 3 S11: -0.5459 S12: -0.3358 S13: 0.7218 REMARK 3 S21: 0.3640 S22: 0.1837 S23: 0.0637 REMARK 3 S31: -1.5082 S32: -0.1618 S33: 0.2293 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 146:152) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8848 7.5473 17.0512 REMARK 3 T TENSOR REMARK 3 T11: 0.4294 T22: 0.3729 REMARK 3 T33: 0.2839 T12: -0.0338 REMARK 3 T13: -0.0165 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 9.6801 L22: 2.2383 REMARK 3 L33: 7.1201 L12: -0.0947 REMARK 3 L13: 6.9293 L23: 2.0674 REMARK 3 S TENSOR REMARK 3 S11: -0.4036 S12: -0.3314 S13: 0.4336 REMARK 3 S21: -0.0532 S22: -0.1104 S23: 0.2505 REMARK 3 S31: -0.4703 S32: -0.4946 S33: 0.4931 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 153:158) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7569 4.0023 24.4832 REMARK 3 T TENSOR REMARK 3 T11: 0.2874 T22: 0.5703 REMARK 3 T33: 0.2134 T12: 0.0094 REMARK 3 T13: -0.0479 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 7.6079 L22: 4.8447 REMARK 3 L33: 6.7455 L12: 4.0323 REMARK 3 L13: 5.5661 L23: 0.2735 REMARK 3 S TENSOR REMARK 3 S11: 0.1856 S12: -1.4080 S13: 0.0703 REMARK 3 S21: 0.6435 S22: -0.0369 S23: -0.3619 REMARK 3 S31: 0.2235 S32: 0.8286 S33: -0.1726 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 159:164) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3020 2.1985 30.2059 REMARK 3 T TENSOR REMARK 3 T11: 0.5384 T22: 1.2375 REMARK 3 T33: 0.3856 T12: 0.1768 REMARK 3 T13: -0.1177 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 3.8491 L22: 7.9649 REMARK 3 L33: 3.8274 L12: 2.8278 REMARK 3 L13: 0.4036 L23: -1.4625 REMARK 3 S TENSOR REMARK 3 S11: 0.4134 S12: -0.8534 S13: -0.4068 REMARK 3 S21: 0.7772 S22: -0.3927 S23: -0.6328 REMARK 3 S31: -0.2381 S32: 0.5603 S33: 0.0688 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 - 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26120 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 59.281 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13300 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : 0.48400 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M NA CACODYLATE PH5.0-6.0 0.05M NA REMARK 280 ACETATE 20-30% PEG-5000MME, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.60000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ARG A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ALA A 6 REMARK 465 PHE A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 PRO A 21 REMARK 465 ALA A 22 REMARK 465 LEU A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 ILE A 55 REMARK 465 ASN A 56 REMARK 465 ASN A 57 REMARK 465 VAL A 58 REMARK 465 GLN A 187 REMARK 465 ALA A 188 REMARK 465 SER A 189 REMARK 465 ALA A 190 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 436 O HOH A 442 1.95 REMARK 500 O HOH A 302 O HOH A 443 2.06 REMARK 500 O HOH A 403 O HOH A 413 2.08 REMARK 500 O HOH A 436 O HOH A 443 2.08 REMARK 500 NH1 ARG A 51 OE2 GLU A 114 2.09 REMARK 500 O HOH A 386 O HOH A 441 2.13 REMARK 500 O HOH A 428 O HOH A 456 2.16 REMARK 500 OD1 ASP A 27 O HOH A 301 2.16 REMARK 500 NZ LYS A 113 O HOH A 302 2.17 REMARK 500 O HOH A 384 O HOH A 459 2.18 REMARK 500 O HOH A 353 O HOH A 427 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 139 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 MSE A 171 CA - CB - CG ANGL. DEV. = -10.3 DEGREES REMARK 500 MSE A 171 CG - SE - CE ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 200 DBREF1 6ZPP A 2 190 UNP A0A151GCU7_9HYPO DBREF2 6ZPP A A0A151GCU7 2 190 SEQADV 6ZPP SER A 1 UNP A0A151GCU EXPRESSION TAG SEQADV 6ZPP PRO A 19 UNP A0A151GCU SER 19 ENGINEERED MUTATION SEQADV 6ZPP SER A 60 UNP A0A151GCU THR 60 ENGINEERED MUTATION SEQRES 1 A 190 SER ARG LEU SER ASN ALA PHE VAL LEU ALA THR THR ALA SEQRES 2 A 190 SER ALA ALA ALA VAL PRO SER PRO ALA LEU PRO ALA ASP SEQRES 3 A 190 ASP ILE LEU LEU ALA ILE ASN GLN SER LEU ARG LEU VAL SEQRES 4 A 190 ASP SER ARG ALA ALA MSE LEU VAL SER GLN VAL ARG HIS SEQRES 5 A 190 GLY ALA ILE ASN ASN VAL GLY SER LEU ALA ASP SER TYR SEQRES 6 A 190 HIS GLU LEU ILE PHE SER LEU ARG GLY ALA VAL ARG ALA SEQRES 7 A 190 VAL ASP ASP VAL TRP ARG PRO LEU PRO LYS ASP ALA PRO SEQRES 8 A 190 MSE ARG ILE VAL GLU SER LEU ARG PRO PHE GLN LYS ILE SEQRES 9 A 190 PRO ALA SER LEU ARG SER ALA LEU LYS GLU ARG LEU ASP SEQRES 10 A 190 ALA ILE ALA GLU ARG PRO GLY GLY CYS GLN ALA VAL ASP SEQRES 11 A 190 ASP ASN ASN ARG GLN LEU GLY LEU ASP PHE ASP ARG LEU SEQRES 12 A 190 TYR TRP GLU ILE ALA SER SER SER SER PHE SER ALA ILE SEQRES 13 A 190 HIS GLU THR VAL SER SER GLN GLN LYS GLN PHE GLU THR SEQRES 14 A 190 ALA MSE ARG GLU LEU THR ASP GLU PHE SER SER ARG CYS SEQRES 15 A 190 LEU ARG ARG ALA GLN ALA SER ALA MODRES 6ZPP MSE A 45 MET MODIFIED RESIDUE MODRES 6ZPP MSE A 92 MET MODIFIED RESIDUE MODRES 6ZPP MSE A 171 MET MODIFIED RESIDUE HET MSE A 45 8 HET MSE A 92 8 HET MSE A 171 8 HET CL A 200 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 HOH *179(H2 O) HELIX 1 AA1 ASP A 26 GLY A 53 1 28 HELIX 2 AA2 SER A 60 ASP A 81 1 22 HELIX 3 AA3 ASP A 89 ARG A 99 1 11 HELIX 4 AA4 PRO A 100 GLN A 102 5 3 HELIX 5 AA5 LYS A 103 ARG A 122 1 20 HELIX 6 AA6 GLY A 124 SER A 149 1 26 HELIX 7 AA7 SER A 150 ALA A 155 5 6 HELIX 8 AA8 ILE A 156 ALA A 186 1 31 SSBOND 1 CYS A 126 CYS A 182 1555 1555 2.05 LINK C ALA A 44 N MSE A 45 1555 1555 1.31 LINK C MSE A 45 N LEU A 46 1555 1555 1.34 LINK C PRO A 91 N MSE A 92 1555 1555 1.32 LINK C MSE A 92 N ARG A 93 1555 1555 1.31 LINK C ALA A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N ARG A 172 1555 1555 1.36 SITE 1 AC1 3 ASN A 33 ARG A 37 ARG A 93 CRYST1 44.127 31.200 59.316 90.00 91.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022662 0.000000 0.000774 0.00000 SCALE2 0.000000 0.032051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016869 0.00000