HEADER SUGAR BINDING PROTEIN 10-JUL-20 6ZQX TITLE CRYSTAL STRUCTURE OF TETRAMERIC FIBRINOGEN-LIKE RECOGNITION DOMAIN OF TITLE 2 FIBCD1 WITH N,N'-DIACETYL CHITOBIOSE LIGAND BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRINOGEN C DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIBRINOGEN-LIKE RECOGNITION DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FIBCD1, UNQ701/PRO1346; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNT-BAC KEYWDS FIBRINOGEN-LIKE DOMAIN, N-ACETYL-BINDING PROTEIN, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SHRIVE,T.J.GREENHOUGH,H.M.WILLIAMS REVDAT 4 31-JAN-24 6ZQX 1 REMARK REVDAT 3 10-JAN-24 6ZQX 1 REMARK REVDAT 2 27-DEC-23 6ZQX 1 JRNL REVDAT 1 21-JUL-21 6ZQX 0 JRNL AUTH H.M.WILLIAMS,J.B.MOELLER,I.BURNS,A.SCHLOSSER,G.L.SORENSEN, JRNL AUTH 2 T.J.GREENHOUGH,U.HOLMSKOV,A.K.SHRIVE JRNL TITL CRYSTAL STRUCTURES OF HUMAN IMMUNE PROTEIN FIBCD1 SUGGEST AN JRNL TITL 2 EXTENDED BINDING SITE COMPATIBLE WITH RECOGNITION OF JRNL TITL 3 PATHOGEN ASSOCIATED CARBOHYDRATE MOTIFS JRNL REF J.BIOL.CHEM. 2023 JRNL REFN ESSN 1083-351X JRNL DOI 10.1016/J.JBC.2023.105552 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.K.SHRIVE,J.B.MOELLER,I.BURNS,J.M.PATERSON,A.J.SHAW, REMARK 1 AUTH 2 A.SCHLOSSER,G.L.SORENSEN,T.J.GREENHOUGH,U.HOLMSKOV REMARK 1 TITL CRYSTAL STRUCTURE OF THE TETRAMERIC FIBRINOGEN-LIKE REMARK 1 TITL 2 RECOGNITION DOMAIN OF FIBRINOGEN C DOMAIN CONTAINING 1 REMARK 1 TITL 3 (FIBCD1) PROTEIN REMARK 1 REF J BIOL CHEM V. 289 2880 2014 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 50983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3520 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.63000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3701 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3078 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5024 ; 1.431 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7099 ; 1.393 ; 1.598 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 7.288 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;24.261 ;20.940 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;12.496 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;16.264 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4279 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 948 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZQX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53600 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 59.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDBID 4M7H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULPHATE, 8% DIOXANE, REMARK 280 0.1 M MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 237.34000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 118.67000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 118.67000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -118.67000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 118.67000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 118.67000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 118.67000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 118.67000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 118.67000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 236 REMARK 465 THR A 237 REMARK 465 GLY A 238 REMARK 465 ARG A 458 REMARK 465 GLU A 459 REMARK 465 ASP A 460 REMARK 465 ARG A 461 REMARK 465 ALA B 236 REMARK 465 THR B 237 REMARK 465 GLY B 238 REMARK 465 ARG B 458 REMARK 465 GLU B 459 REMARK 465 ASP B 460 REMARK 465 ARG B 461 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 243 -178.45 -170.02 REMARK 500 GLU A 289 -14.00 -153.72 REMARK 500 ASP A 290 -8.11 -159.23 REMARK 500 ASN A 340 18.39 57.97 REMARK 500 ASP A 370 67.34 71.97 REMARK 500 ARG A 412 -90.96 -100.93 REMARK 500 ASN A 413 59.96 -155.75 REMARK 500 ASN A 418 53.77 -151.53 REMARK 500 ARG A 425 73.91 70.22 REMARK 500 GLU B 289 -18.87 -157.08 REMARK 500 ASP B 290 -3.24 -157.16 REMARK 500 ASP B 370 66.28 74.81 REMARK 500 ARG B 412 -91.72 -103.93 REMARK 500 ASN B 413 60.88 -152.48 REMARK 500 ASN B 418 54.04 -154.05 REMARK 500 ARG B 425 73.57 62.95 REMARK 500 TRP B 440 -60.52 -101.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 393 OD1 REMARK 620 2 ASP A 393 OD2 53.0 REMARK 620 3 ASP A 395 OD1 81.2 122.7 REMARK 620 4 SER A 397 O 155.7 149.8 83.9 REMARK 620 5 ASN A 399 O 120.3 87.4 89.0 78.3 REMARK 620 6 HOH A 688 O 76.7 108.8 88.4 83.8 162.1 REMARK 620 7 HOH A 725 O 106.1 75.0 159.5 82.4 102.9 75.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 393 OD1 REMARK 620 2 ASP B 393 OD2 53.0 REMARK 620 3 ASP B 395 OD1 80.2 116.2 REMARK 620 4 SER B 397 O 151.9 154.2 84.3 REMARK 620 5 ASN B 399 O 121.0 80.7 92.7 82.9 REMARK 620 6 HOH B 662 O 75.9 115.4 86.0 79.7 162.6 REMARK 620 7 HOH B 733 O 110.6 80.4 163.2 80.5 92.3 84.5 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZQR RELATED DB: PDB REMARK 900 SAME STRUCTURE BUT WITH GLCNAC LIGAND,AND SAME CITATION REMARK 900 RELATED ID: 4M7H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FIBCD1 REMARK 900 RELATED ID: 4M7F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FIBCD1 WITH MANNAC BOUND DBREF 6ZQX A 236 461 UNP Q8N539 FBCD1_HUMAN 236 461 DBREF 6ZQX B 236 461 UNP Q8N539 FBCD1_HUMAN 236 461 SEQRES 1 A 226 ALA THR GLY SER ARG PRO ARG ASP CYS LEU ASP VAL LEU SEQRES 2 A 226 LEU SER GLY GLN GLN ASP ASP GLY VAL TYR SER VAL PHE SEQRES 3 A 226 PRO THR HIS TYR PRO ALA GLY PHE GLN VAL TYR CYS ASP SEQRES 4 A 226 MET ARG THR ASP GLY GLY GLY TRP THR VAL PHE GLN ARG SEQRES 5 A 226 ARG GLU ASP GLY SER VAL ASN PHE PHE ARG GLY TRP ASP SEQRES 6 A 226 ALA TYR ARG ASP GLY PHE GLY ARG LEU THR GLY GLU HIS SEQRES 7 A 226 TRP LEU GLY LEU LYS ARG ILE HIS ALA LEU THR THR GLN SEQRES 8 A 226 ALA ALA TYR GLU LEU HIS VAL ASP LEU GLU ASP PHE GLU SEQRES 9 A 226 ASN GLY THR ALA TYR ALA ARG TYR GLY SER PHE GLY VAL SEQRES 10 A 226 GLY LEU PHE SER VAL ASP PRO GLU GLU ASP GLY TYR PRO SEQRES 11 A 226 LEU THR VAL ALA ASP TYR SER GLY THR ALA GLY ASP SER SEQRES 12 A 226 LEU LEU LYS HIS SER GLY MET ARG PHE THR THR LYS ASP SEQRES 13 A 226 ARG ASP SER ASP HIS SER GLU ASN ASN CYS ALA ALA PHE SEQRES 14 A 226 TYR ARG GLY ALA TRP TRP TYR ARG ASN CYS HIS THR SER SEQRES 15 A 226 ASN LEU ASN GLY GLN TYR LEU ARG GLY ALA HIS ALA SER SEQRES 16 A 226 TYR ALA ASP GLY VAL GLU TRP SER SER TRP THR GLY TRP SEQRES 17 A 226 GLN TYR SER LEU LYS PHE SER GLU MET LYS ILE ARG PRO SEQRES 18 A 226 VAL ARG GLU ASP ARG SEQRES 1 B 226 ALA THR GLY SER ARG PRO ARG ASP CYS LEU ASP VAL LEU SEQRES 2 B 226 LEU SER GLY GLN GLN ASP ASP GLY VAL TYR SER VAL PHE SEQRES 3 B 226 PRO THR HIS TYR PRO ALA GLY PHE GLN VAL TYR CYS ASP SEQRES 4 B 226 MET ARG THR ASP GLY GLY GLY TRP THR VAL PHE GLN ARG SEQRES 5 B 226 ARG GLU ASP GLY SER VAL ASN PHE PHE ARG GLY TRP ASP SEQRES 6 B 226 ALA TYR ARG ASP GLY PHE GLY ARG LEU THR GLY GLU HIS SEQRES 7 B 226 TRP LEU GLY LEU LYS ARG ILE HIS ALA LEU THR THR GLN SEQRES 8 B 226 ALA ALA TYR GLU LEU HIS VAL ASP LEU GLU ASP PHE GLU SEQRES 9 B 226 ASN GLY THR ALA TYR ALA ARG TYR GLY SER PHE GLY VAL SEQRES 10 B 226 GLY LEU PHE SER VAL ASP PRO GLU GLU ASP GLY TYR PRO SEQRES 11 B 226 LEU THR VAL ALA ASP TYR SER GLY THR ALA GLY ASP SER SEQRES 12 B 226 LEU LEU LYS HIS SER GLY MET ARG PHE THR THR LYS ASP SEQRES 13 B 226 ARG ASP SER ASP HIS SER GLU ASN ASN CYS ALA ALA PHE SEQRES 14 B 226 TYR ARG GLY ALA TRP TRP TYR ARG ASN CYS HIS THR SER SEQRES 15 B 226 ASN LEU ASN GLY GLN TYR LEU ARG GLY ALA HIS ALA SER SEQRES 16 B 226 TYR ALA ASP GLY VAL GLU TRP SER SER TRP THR GLY TRP SEQRES 17 B 226 GLN TYR SER LEU LYS PHE SER GLU MET LYS ILE ARG PRO SEQRES 18 B 226 VAL ARG GLU ASP ARG HET NAG C 1 14 HET FUC C 2 10 HET CA A 501 1 HET SO4 A 504 5 HET GOL A 505 6 HET NAG A 506 15 HET CA B 501 1 HET SO4 B 502 5 HET SO4 B 503 5 HET ACY B 504 4 HET ACY B 505 4 HET ACY B 506 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 4 CA 2(CA 2+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 11 ACY 3(C2 H4 O2) FORMUL 14 HOH *337(H2 O) HELIX 1 AA1 ASP A 243 SER A 250 1 8 HELIX 2 AA2 ARG A 276 GLY A 280 5 5 HELIX 3 AA3 GLY A 298 GLY A 305 1 8 HELIX 4 AA4 GLY A 316 THR A 325 1 10 HELIX 5 AA5 LEU A 379 SER A 383 5 5 HELIX 6 AA6 ASN A 400 TYR A 405 1 6 HELIX 7 AA7 SER A 438 GLY A 442 1 5 HELIX 8 AA8 ASP B 243 SER B 250 1 8 HELIX 9 AA9 ARG B 276 GLY B 280 5 5 HELIX 10 AB1 GLY B 298 GLY B 305 1 8 HELIX 11 AB2 GLY B 316 GLN B 326 1 11 HELIX 12 AB3 LEU B 379 SER B 383 5 5 HELIX 13 AB4 ASN B 400 TYR B 405 1 6 HELIX 14 AB5 SER B 438 GLY B 442 1 5 SHEET 1 AA1 5 GLY A 256 VAL A 260 0 SHEET 2 AA1 5 PHE A 269 ASP A 274 -1 O CYS A 273 N GLY A 256 SHEET 3 AA1 5 TRP A 282 ARG A 288 -1 O VAL A 284 N TYR A 272 SHEET 4 AA1 5 HIS A 313 TRP A 314 -1 O HIS A 313 N ARG A 287 SHEET 5 AA1 5 PHE A 306 GLY A 307 -1 N PHE A 306 O TRP A 314 SHEET 1 AA2 7 GLY A 256 VAL A 260 0 SHEET 2 AA2 7 PHE A 269 ASP A 274 -1 O CYS A 273 N GLY A 256 SHEET 3 AA2 7 TRP A 282 ARG A 288 -1 O VAL A 284 N TYR A 272 SHEET 4 AA2 7 PHE A 449 PRO A 456 -1 O ILE A 454 N THR A 283 SHEET 5 AA2 7 TYR A 329 GLU A 336 -1 N GLU A 330 O ARG A 455 SHEET 6 AA2 7 THR A 342 VAL A 352 -1 O ALA A 345 N VAL A 333 SHEET 7 AA2 7 LEU A 366 GLY A 373 -1 O SER A 372 N ARG A 346 SHEET 1 AA3 2 SER A 417 ASN A 418 0 SHEET 2 AA3 2 GLU A 436 TRP A 437 -1 O GLU A 436 N ASN A 418 SHEET 1 AA4 2 GLY A 426 ALA A 427 0 SHEET 2 AA4 2 TYR A 445 SER A 446 -1 O SER A 446 N GLY A 426 SHEET 1 AA5 5 GLY B 256 VAL B 260 0 SHEET 2 AA5 5 PHE B 269 ASP B 274 -1 O CYS B 273 N GLY B 256 SHEET 3 AA5 5 TRP B 282 ARG B 288 -1 O VAL B 284 N TYR B 272 SHEET 4 AA5 5 HIS B 313 TRP B 314 -1 O HIS B 313 N ARG B 287 SHEET 5 AA5 5 PHE B 306 GLY B 307 -1 N PHE B 306 O TRP B 314 SHEET 1 AA6 7 GLY B 256 VAL B 260 0 SHEET 2 AA6 7 PHE B 269 ASP B 274 -1 O CYS B 273 N GLY B 256 SHEET 3 AA6 7 TRP B 282 ARG B 288 -1 O VAL B 284 N TYR B 272 SHEET 4 AA6 7 PHE B 449 PRO B 456 -1 O MET B 452 N PHE B 285 SHEET 5 AA6 7 TYR B 329 GLU B 336 -1 N HIS B 332 O LYS B 453 SHEET 6 AA6 7 THR B 342 VAL B 352 -1 O TYR B 347 N LEU B 331 SHEET 7 AA6 7 LEU B 366 GLY B 373 -1 O SER B 372 N ARG B 346 SHEET 1 AA7 2 SER B 417 ASN B 418 0 SHEET 2 AA7 2 GLU B 436 TRP B 437 -1 O GLU B 436 N ASN B 418 SHEET 1 AA8 2 GLY B 426 ALA B 427 0 SHEET 2 AA8 2 TYR B 445 SER B 446 -1 O SER B 446 N GLY B 426 SSBOND 1 CYS A 244 CYS A 273 1555 1555 2.05 SSBOND 2 CYS A 401 CYS A 414 1555 1555 2.12 SSBOND 3 CYS B 244 CYS B 273 1555 1555 2.06 SSBOND 4 CYS B 401 CYS B 414 1555 1555 2.10 LINK ND2 ASN A 340 C1 NAG C 1 1555 1555 1.45 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.44 LINK OD1 ASP A 393 CA CA A 501 1555 1555 2.55 LINK OD2 ASP A 393 CA CA A 501 1555 1555 2.39 LINK OD1 ASP A 395 CA CA A 501 1555 1555 2.28 LINK O SER A 397 CA CA A 501 1555 1555 2.36 LINK O ASN A 399 CA CA A 501 1555 1555 2.44 LINK CA CA A 501 O HOH A 688 1555 1555 2.33 LINK CA CA A 501 O HOH A 725 1555 1555 2.50 LINK OD1 ASP B 393 CA CA B 501 1555 1555 2.55 LINK OD2 ASP B 393 CA CA B 501 1555 1555 2.40 LINK OD1 ASP B 395 CA CA B 501 1555 1555 2.30 LINK O SER B 397 CA CA B 501 1555 1555 2.48 LINK O ASN B 399 CA CA B 501 1555 1555 2.31 LINK CA CA B 501 O HOH B 662 1555 1555 2.27 LINK CA CA B 501 O HOH B 733 1555 1555 2.38 CISPEP 1 ASN A 413 CYS A 414 0 2.43 CISPEP 2 ASN B 413 CYS B 414 0 1.39 CRYST1 118.670 118.670 44.230 90.00 90.00 90.00 P 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022609 0.00000