HEADER HYDROLASE 13-JUL-20 6ZRG TITLE CRYSTAL STRUCTURE OF OXA-10LOOP48 IN COMPLEX WITH HYDROLYZED DORIPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLAOXA-10, BLAOXA-10, OXA-10, BK373_28375, CQP61_30695, SOURCE 5 E4K55_27185, FORC82_P097, GII67_09965; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-24 KEYWDS BETA-LACTAMASE, OXA-10LOOP48, CARBAPENEM, DORIPENEM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.TASSONE,F.DI PISA,M.BENVENUTI,F.DE LUCA,C.POZZI,J.D.DOCQUIER, AUTHOR 2 S.MANGANI REVDAT 2 31-JAN-24 6ZRG 1 COMPND HETNAM REVDAT 1 21-JUL-21 6ZRG 0 JRNL AUTH G.TASSONE,F.DI PISA,M.BENVENUTI,F.DE LUCA,C.POZZI, JRNL AUTH 2 J.D.DOCQUIER,S.MANGANI JRNL TITL MECHANISTIC INSIGHTS INTO CARBAPENEM HYDROLYSIS BY OXA-48 JRNL TITL 2 AND THE OXA10-DERIVED HYBRIDS OXA-10 LOOP24 AND LOOP48 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 57904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4210 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 231 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3831 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 548 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.828 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4073 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5530 ; 1.692 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 6.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;38.462 ;23.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 710 ;13.544 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 535 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3066 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292109094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61062 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 52.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.6 - 3 M AMMONIUM SULFATE AND 100 MM REMARK 280 BICINE, PH 9, PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.78150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.83700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.78150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.83700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 262 REMARK 465 GLY A 263 REMARK 465 GLY B 262 REMARK 465 GLY B 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CD CE NZ REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 91 CE NZ REMARK 470 LYS A 253 NZ REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 LYS B 49 CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 LYS B 137 CD CE NZ REMARK 470 LYS B 152 CE NZ REMARK 470 LYS B 177 NZ REMARK 470 LYS B 182 CE NZ REMARK 470 ILE B 212 CD1 REMARK 470 LYS B 253 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 46 -44.79 76.96 REMARK 500 SER A 46 -46.63 81.42 REMARK 500 ALA A 66 -132.73 43.57 REMARK 500 GLU A 156 11.06 -153.81 REMARK 500 GLU A 226 -125.73 53.12 REMARK 500 TRP B 28 -6.88 -58.00 REMARK 500 ALA B 66 -136.33 49.04 REMARK 500 ASN B 85 -174.93 -174.54 REMARK 500 GLU B 226 -125.81 55.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 715 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 716 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 717 DISTANCE = 9.04 ANGSTROMS REMARK 525 HOH B 628 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 629 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 630 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH B 631 DISTANCE = 7.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QP2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 DBREF 6ZRG A 20 263 UNP Q7BNC2 Q7BNC2_ECOLX 20 266 DBREF 6ZRG B 20 263 UNP Q7BNC2 Q7BNC2_ECOLX 20 266 SEQADV 6ZRG TYR A 208 UNP Q7BNC2 PHE 208 CONFLICT SEQADV 6ZRG A UNP Q7BNC2 GLY 210 DELETION SEQADV 6ZRG A UNP Q7BNC2 VAL 211 DELETION SEQADV 6ZRG A UNP Q7BNC2 GLY 212 DELETION SEQADV 6ZRG ARG A 211 UNP Q7BNC2 GLU 214 CONFLICT SEQADV 6ZRG ILE A 212 UNP Q7BNC2 SER 215 CONFLICT SEQADV 6ZRG GLU A 213 UNP Q7BNC2 ASN 216 CONFLICT SEQADV 6ZRG LYS A 215 UNP Q7BNC2 GLY 218 CONFLICT SEQADV 6ZRG ILE A 216 UNP Q7BNC2 VAL 219 CONFLICT SEQADV 6ZRG GLY A 217 UNP Q7BNC2 ALA 220 CONFLICT SEQADV 6ZRG TYR B 208 UNP Q7BNC2 PHE 208 CONFLICT SEQADV 6ZRG B UNP Q7BNC2 GLY 210 DELETION SEQADV 6ZRG B UNP Q7BNC2 VAL 211 DELETION SEQADV 6ZRG B UNP Q7BNC2 GLY 212 DELETION SEQADV 6ZRG ARG B 211 UNP Q7BNC2 GLU 214 CONFLICT SEQADV 6ZRG ILE B 212 UNP Q7BNC2 SER 215 CONFLICT SEQADV 6ZRG GLU B 213 UNP Q7BNC2 ASN 216 CONFLICT SEQADV 6ZRG LYS B 215 UNP Q7BNC2 GLY 218 CONFLICT SEQADV 6ZRG ILE B 216 UNP Q7BNC2 VAL 219 CONFLICT SEQADV 6ZRG GLY B 217 UNP Q7BNC2 ALA 220 CONFLICT SEQRES 1 A 244 GLY SER ILE THR GLU ASN THR SER TRP ASN LYS GLU PHE SEQRES 2 A 244 SER ALA GLU ALA VAL ASN GLY VAL PHE VAL LEU CYS LYS SEQRES 3 A 244 SER SER SER LYS SER CYS ALA THR ASN ASP LEU ALA ARG SEQRES 4 A 244 ALA SER LYS GLU TYR LEU PRO ALA SER THR PHE KCX ILE SEQRES 5 A 244 PRO ASN ALA ILE ILE GLY LEU GLU THR GLY VAL ILE LYS SEQRES 6 A 244 ASN GLU HIS GLN VAL PHE LYS TRP ASP GLY LYS PRO ARG SEQRES 7 A 244 ALA MET LYS GLN TRP GLU ARG ASP LEU THR LEU ARG GLY SEQRES 8 A 244 ALA ILE GLN VAL SER ALA VAL PRO VAL PHE GLN GLN ILE SEQRES 9 A 244 ALA ARG GLU VAL GLY GLU VAL ARG MET GLN LYS TYR LEU SEQRES 10 A 244 LYS LYS PHE SER TYR GLY ASN GLN ASN ILE SER GLY GLY SEQRES 11 A 244 ILE ASP LYS PHE TRP LEU GLU GLY GLN LEU ARG ILE SER SEQRES 12 A 244 ALA VAL ASN GLN VAL GLU PHE LEU GLU SER LEU TYR LEU SEQRES 13 A 244 ASN LYS LEU SER ALA SER LYS GLU ASN GLN LEU ILE VAL SEQRES 14 A 244 LYS GLU ALA LEU VAL THR GLU ALA ALA PRO GLU TYR LEU SEQRES 15 A 244 VAL HIS SER LYS THR GLY TYR SER THR ARG ILE GLU PRO SEQRES 16 A 244 LYS ILE GLY TRP TRP VAL GLY TRP VAL GLU LYS GLU THR SEQRES 17 A 244 GLU VAL TYR PHE PHE ALA PHE ASN MET ASP ILE ASP ASN SEQRES 18 A 244 GLU SER LYS LEU PRO LEU ARG LYS SER ILE PRO THR LYS SEQRES 19 A 244 ILE MET GLU SER GLU GLY ILE ILE GLY GLY SEQRES 1 B 244 GLY SER ILE THR GLU ASN THR SER TRP ASN LYS GLU PHE SEQRES 2 B 244 SER ALA GLU ALA VAL ASN GLY VAL PHE VAL LEU CYS LYS SEQRES 3 B 244 SER SER SER LYS SER CYS ALA THR ASN ASP LEU ALA ARG SEQRES 4 B 244 ALA SER LYS GLU TYR LEU PRO ALA SER THR PHE KCX ILE SEQRES 5 B 244 PRO ASN ALA ILE ILE GLY LEU GLU THR GLY VAL ILE LYS SEQRES 6 B 244 ASN GLU HIS GLN VAL PHE LYS TRP ASP GLY LYS PRO ARG SEQRES 7 B 244 ALA MET LYS GLN TRP GLU ARG ASP LEU THR LEU ARG GLY SEQRES 8 B 244 ALA ILE GLN VAL SER ALA VAL PRO VAL PHE GLN GLN ILE SEQRES 9 B 244 ALA ARG GLU VAL GLY GLU VAL ARG MET GLN LYS TYR LEU SEQRES 10 B 244 LYS LYS PHE SER TYR GLY ASN GLN ASN ILE SER GLY GLY SEQRES 11 B 244 ILE ASP LYS PHE TRP LEU GLU GLY GLN LEU ARG ILE SER SEQRES 12 B 244 ALA VAL ASN GLN VAL GLU PHE LEU GLU SER LEU TYR LEU SEQRES 13 B 244 ASN LYS LEU SER ALA SER LYS GLU ASN GLN LEU ILE VAL SEQRES 14 B 244 LYS GLU ALA LEU VAL THR GLU ALA ALA PRO GLU TYR LEU SEQRES 15 B 244 VAL HIS SER LYS THR GLY TYR SER THR ARG ILE GLU PRO SEQRES 16 B 244 LYS ILE GLY TRP TRP VAL GLY TRP VAL GLU LYS GLU THR SEQRES 17 B 244 GLU VAL TYR PHE PHE ALA PHE ASN MET ASP ILE ASP ASN SEQRES 18 B 244 GLU SER LYS LEU PRO LEU ARG LYS SER ILE PRO THR LYS SEQRES 19 B 244 ILE MET GLU SER GLU GLY ILE ILE GLY GLY MODRES 6ZRG KCX A 70 LYS MODIFIED RESIDUE MODRES 6ZRG KCX B 70 LYS MODIFIED RESIDUE HET KCX A 70 12 HET KCX B 70 12 HET QP2 A 301 28 HET EDO A 302 8 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET SO4 A 308 5 HET CL A 309 1 HET SO4 B 301 5 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM QP2 (4R,5S)-3-{[(3S,5S)-5-({[AMINO(DIHYDROXY) HETNAM 2 QP2 METHYL]AMINO}METHYL)PYRROLIDIN-3-YL]SULFANYL}-5-[(1S, HETNAM 3 QP2 2R)-1-CARBOXY-2-HYDROXYPROPYL]-4-METHYL-4,5-DIHYDRO- HETNAM 4 QP2 1H-PYRROLE-2-CARBOXYLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN QP2 HYDROLYZED DORIPENEM HETSYN EDO ETHYLENE GLYCOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 QP2 C16 H28 N4 O7 S FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 SO4 2(O4 S 2-) FORMUL 11 CL CL 1- FORMUL 13 HOH *548(H2 O) HELIX 1 AA1 THR A 26 TRP A 28 5 3 HELIX 2 AA2 ASN A 29 ALA A 34 1 6 HELIX 3 AA3 ASP A 55 SER A 60 1 6 HELIX 4 AA4 PRO A 65 THR A 68 5 4 HELIX 5 AA5 PHE A 69 THR A 80 1 12 HELIX 6 AA6 MET A 99 GLU A 103 5 5 HELIX 7 AA7 THR A 107 VAL A 114 1 8 HELIX 8 AA8 ALA A 116 PHE A 139 1 24 HELIX 9 AA9 LYS A 152 GLY A 157 1 6 HELIX 10 AB1 SER A 162 LEU A 175 1 14 HELIX 11 AB2 SER A 181 LEU A 192 1 12 HELIX 12 AB3 ASN A 240 LEU A 244 5 5 HELIX 13 AB4 PRO A 245 GLU A 258 1 14 HELIX 14 AB5 TRP B 28 ALA B 36 1 9 HELIX 15 AB6 ASP B 55 LYS B 61 1 7 HELIX 16 AB7 PRO B 65 THR B 68 5 4 HELIX 17 AB8 PHE B 69 THR B 80 1 12 HELIX 18 AB9 MET B 99 GLU B 103 5 5 HELIX 19 AC1 LEU B 108 VAL B 114 1 7 HELIX 20 AC2 ALA B 116 GLY B 128 1 13 HELIX 21 AC3 GLY B 128 PHE B 139 1 12 HELIX 22 AC4 ALA B 163 LEU B 175 1 13 HELIX 23 AC5 SER B 181 LEU B 192 1 12 HELIX 24 AC6 ASN B 240 LEU B 244 5 5 HELIX 25 AC7 PRO B 245 GLU B 258 1 14 SHEET 1 AA1 7 SER A 21 GLU A 24 0 SHEET 2 AA1 7 SER A 50 THR A 53 1 O CYS A 51 N THR A 23 SHEET 3 AA1 7 GLY A 39 LYS A 45 -1 N LEU A 43 O ALA A 52 SHEET 4 AA1 7 GLU A 228 ASP A 237 -1 O PHE A 231 N CYS A 44 SHEET 5 AA1 7 ILE A 216 LYS A 225 -1 N GLY A 221 O PHE A 232 SHEET 6 AA1 7 TYR A 200 SER A 209 -1 N SER A 209 O ILE A 216 SHEET 7 AA1 7 VAL A 193 ALA A 197 -1 N GLU A 195 O VAL A 202 SHEET 1 AA2 7 SER B 21 GLU B 24 0 SHEET 2 AA2 7 SER B 50 THR B 53 1 O CYS B 51 N SER B 21 SHEET 3 AA2 7 GLY B 39 LYS B 45 -1 N LYS B 45 O SER B 50 SHEET 4 AA2 7 GLU B 228 ILE B 238 -1 O PHE B 231 N CYS B 44 SHEET 5 AA2 7 LYS B 215 LYS B 225 -1 N LYS B 215 O ILE B 238 SHEET 6 AA2 7 TYR B 200 SER B 209 -1 N SER B 209 O ILE B 216 SHEET 7 AA2 7 VAL B 193 ALA B 196 -1 N THR B 194 O VAL B 202 SHEET 1 AA3 2 GLU B 62 TYR B 63 0 SHEET 2 AA3 2 ILE B 161 SER B 162 -1 O ILE B 161 N TYR B 63 SHEET 1 AA4 2 VAL B 89 PHE B 90 0 SHEET 2 AA4 2 LEU B 106 THR B 107 -1 O LEU B 106 N PHE B 90 SSBOND 1 CYS A 44 CYS A 51 1555 1555 2.10 SSBOND 2 CYS B 44 CYS B 51 1555 1555 2.14 LINK C PHE A 69 N KCX A 70 1555 1555 1.34 LINK C KCX A 70 N ILE A 71 1555 1555 1.34 LINK C PHE B 69 N KCX B 70 1555 1555 1.33 LINK C KCX B 70 N ILE B 71 1555 1555 1.34 CISPEP 1 GLU A 213 PRO A 214 0 -4.61 CISPEP 2 GLU B 213 PRO B 214 0 -17.81 SITE 1 AC1 14 SER A 67 KCX A 70 TRP A 102 SER A 115 SITE 2 AC1 14 VAL A 117 LYS A 205 THR A 206 GLY A 207 SITE 3 AC1 14 LEU A 244 PRO A 245 ARG A 247 HOH A 401 SITE 4 AC1 14 HOH A 402 HOH A 469 SITE 1 AC2 7 ARG A 125 LYS A 138 ASP A 151 HOH A 403 SITE 2 AC2 7 HOH A 430 HOH A 514 HOH A 620 SITE 1 AC3 2 ARG A 160 HOH A 675 SITE 1 AC4 6 THR A 107 ARG A 109 GLU B 224 GLU B 226 SITE 2 AC4 6 HOH B 421 HOH B 438 SITE 1 AC5 5 LYS A 95 SER A 140 GLN A 144 HOH A 487 SITE 2 AC5 5 HOH A 512 SITE 1 AC6 3 TYR A 200 ILE A 260 HOH A 438 SITE 1 AC7 5 ARG A 125 SO4 A 308 HOH A 403 HOH A 414 SITE 2 AC7 5 HOH A 590 SITE 1 AC8 11 ARG A 97 PRO A 118 LYS A 137 EDO A 307 SITE 2 AC8 11 HOH A 437 HOH A 474 HOH A 477 HOH A 493 SITE 3 AC8 11 HOH A 498 HOH A 565 HOH A 590 SITE 1 AC9 3 GLN A 121 LYS A 134 ARG A 211 SITE 1 AD1 6 ARG B 58 LYS B 61 HOH B 408 HOH B 440 SITE 2 AD1 6 HOH B 444 HOH B 493 CRYST1 49.563 93.674 126.381 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020176 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007913 0.00000