HEADER VIRAL PROTEIN 13-JUL-20 6ZRK TITLE CRYSTAL STRUCTURE OF H8 HAEMAGGLUTININ COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/BLUE-WINGED SOURCE 3 TEAL/GUATEMALA/CIP049-14/2010(H8N4)); SOURCE 4 ORGANISM_TAXID: 1074858; SOURCE 5 STRAIN: A/BLUE-WINGED TEAL/GUATEMALA/CIP049-14/2010(H8N4); SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 12 ORGANISM_TAXID: 11320; SOURCE 13 GENE: HA; SOURCE 14 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS RECEPTOR BINDING, FUSION OF VIRUS MEMBRANE WITH HOST PLASMA MEMBRANE, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.XIONG,P.WALKER,J.ZHANG,S.GAMBLIN,J.J.SKEHEL REVDAT 5 31-JAN-24 6ZRK 1 REMARK REVDAT 4 13-OCT-21 6ZRK 1 JRNL REMARK REVDAT 3 16-JUN-21 6ZRK 1 JRNL REVDAT 2 23-DEC-20 6ZRK 1 REMARK REVDAT 1 02-DEC-20 6ZRK 0 JRNL AUTH S.J.GAMBLIN,S.G.VACHIERI,X.XIONG,J.ZHANG,S.R.MARTIN, JRNL AUTH 2 J.J.SKEHEL JRNL TITL HEMAGGLUTININ STRUCTURE AND ACTIVITIES. JRNL REF COLD SPRING HARB PERSPECT V. 11 2021 JRNL REF 2 MED JRNL REFN ISSN 2157-1422 JRNL PMID 32513673 JRNL DOI 10.1101/CSHPERSPECT.A038638 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 44635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 169 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4165 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3652 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5665 ; 1.682 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8556 ; 4.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 7.156 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;35.167 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 683 ;15.142 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4550 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 803 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1958 ; 1.250 ; 4.229 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1957 ; 1.250 ; 4.228 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2444 ; 2.056 ; 6.338 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292106790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 83.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0, 20-22% PEG3350, REMARK 280 0.2 M LITHIUM CITRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 49.36950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 28.50349 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 116.79433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 49.36950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 28.50349 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 116.79433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 49.36950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 28.50349 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 116.79433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 49.36950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 28.50349 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 116.79433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 49.36950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 28.50349 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 116.79433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 49.36950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 28.50349 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 116.79433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.00699 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 233.58867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 57.00699 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 233.58867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 57.00699 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 233.58867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 57.00699 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 233.58867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 57.00699 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 233.58867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 57.00699 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 233.58867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 49.36950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 85.51048 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -49.36950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 85.51048 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 65 3.06 -67.58 REMARK 500 ALA C 85 107.21 -45.01 REMARK 500 ASN C 123 50.42 -93.96 REMARK 500 SER C 127 40.21 70.76 REMARK 500 CYS C 133 65.20 -118.25 REMARK 500 ALA C 141 -155.40 -142.21 REMARK 500 ASP C 155 67.43 27.31 REMARK 500 PHE C 159 96.38 -65.70 REMARK 500 LYS C 192 -51.00 77.41 REMARK 500 ASN C 246 -13.33 83.12 REMARK 500 ALA D 332 -64.30 -92.81 REMARK 500 SER D 454 -129.34 57.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 6ZRK C 1 326 UNP G0KTJ4 G0KTJ4_9INFA 18 343 DBREF1 6ZRK D 328 489 UNP A0A5C1ZL56_9INFA DBREF2 6ZRK D A0A5C1ZL56 345 506 SEQADV 6ZRK ASP C -1 UNP G0KTJ4 EXPRESSION TAG SEQADV 6ZRK PRO C 0 UNP G0KTJ4 EXPRESSION TAG SEQRES 1 C 328 ASP PRO ASP ARG ILE CYS ILE GLY TYR GLN SER ASN ASN SEQRES 2 C 328 SER THR ASP THR VAL ASN THR LEU ILE GLU GLN ASN VAL SEQRES 3 C 328 PRO VAL THR GLN THR MET GLU LEU VAL GLU THR GLU LYS SEQRES 4 C 328 HIS PRO ALA TYR CYS ASN THR ASP LEU GLY THR PRO LEU SEQRES 5 C 328 GLU LEU ARG ASP CYS LYS ILE GLU ALA VAL ILE TYR GLY SEQRES 6 C 328 ASN PRO LYS CYS ASP ILE HIS LEU LYS ASP GLN GLY TRP SEQRES 7 C 328 SER TYR ILE VAL GLU ARG PRO SER ALA PRO GLU GLY MET SEQRES 8 C 328 CYS TYR PRO GLY SER VAL GLU ASN LEU GLU GLU LEU ARG SEQRES 9 C 328 PHE VAL PHE SER ASN ALA ALA SER TYR LYS ARG ILE ARG SEQRES 10 C 328 LEU PHE ASP TYR SER ARG TRP ASN VAL THR SER SER GLY SEQRES 11 C 328 THR SER LYS ALA CYS ASN ALA SER THR GLY GLY GLN ALA SEQRES 12 C 328 PHE TYR ARG SER ILE ASN TRP LEU THR LYS LYS LYS PRO SEQRES 13 C 328 ASP THR TYR ASP PHE ASN GLU GLY SER TYR VAL ASN ASN SEQRES 14 C 328 GLU ASP GLY ASP ILE ILE PHE LEU TRP GLY ILE HIS HIS SEQRES 15 C 328 PRO PRO ASN THR LYS GLU GLN THR THR LEU TYR LYS ASN SEQRES 16 C 328 ALA ASN THR LEU SER SER VAL THR THR ASN THR ILE ASN SEQRES 17 C 328 ARG SER PHE GLN PRO ASN ILE GLY PRO ARG PRO LEU VAL SEQRES 18 C 328 ARG GLY GLN GLN GLY ARG MET ASP TYR TYR TRP GLY ILE SEQRES 19 C 328 LEU LYS ARG GLY GLU THR LEU LYS ILE ARG THR ASN GLY SEQRES 20 C 328 ASN LEU ILE ALA PRO GLU PHE GLY TYR LEU LEU LYS GLY SEQRES 21 C 328 GLU SER HIS GLY ARG ILE ILE GLN ASN GLU ASP ILE PRO SEQRES 22 C 328 ILE GLY ASN CYS HIS THR LYS CYS GLN THR TYR ALA GLY SEQRES 23 C 328 ALA ILE ASN SER SER LYS PRO PHE GLN ASN ALA SER ARG SEQRES 24 C 328 HIS TYR MET GLY GLU CYS PRO LYS TYR VAL LYS LYS ALA SEQRES 25 C 328 SER LEU ARG LEU ALA VAL GLY LEU ARG ASN THR PRO SER SEQRES 26 C 328 ILE GLU PRO SEQRES 1 D 162 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 D 162 TRP SER GLY MET ILE ASP GLY TRP TYR GLY PHE HIS HIS SEQRES 3 D 162 SER ASN SER GLU GLY THR GLY MET ALA ALA ASP GLN LYS SEQRES 4 D 162 SER THR GLN GLU ALA ILE ASP LYS ILE THR ASN LYS VAL SEQRES 5 D 162 ASN ASN ILE VAL ASP LYS MET ASN ARG GLU PHE GLU VAL SEQRES 6 D 162 VAL ASN HIS GLU PHE SER GLU VAL GLU LYS ARG ILE ASN SEQRES 7 D 162 MET ILE ASN ASP LYS ILE ASP ASP GLN ILE GLU ASP LEU SEQRES 8 D 162 TRP ALA TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 D 162 GLN LYS THR LEU ASP GLU HIS ASP SER ASN VAL LYS ASN SEQRES 10 D 162 LEU PHE ASP GLU VAL LYS ARG ARG LEU SER THR ASN ALA SEQRES 11 D 162 ILE ASP ALA GLY ASN GLY CYS PHE ASP ILE LEU HIS LYS SEQRES 12 D 162 CYS ASN ASN GLU CYS MET GLU THR ILE LYS ASN GLY THR SEQRES 13 D 162 TYR ASN HIS LYS GLU TYR HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET MAN A 4 11 HET MAN A 5 11 HET FUC A 6 10 HET NAG B 1 14 HET NAG B 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG C 413 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 9(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUC C6 H12 O5 FORMUL 8 HOH *249(H2 O) HELIX 1 AA1 LYS C 56 GLY C 63 1 8 HELIX 2 AA2 CYS C 67 LEU C 71 5 5 HELIX 3 AA3 ASN C 97 ALA C 108 1 12 HELIX 4 AA4 ASN C 183 LYS C 192 1 10 HELIX 5 AA5 ASP D 364 ASN D 387 1 24 HELIX 6 AA6 GLU D 401 SER D 454 1 54 HELIX 7 AA7 ASN D 472 ASN D 481 1 10 HELIX 8 AA8 ASN D 485 TYR D 489 5 5 SHEET 1 AA1 5 GLY D 358 ALA D 363 0 SHEET 2 AA1 5 TYR D 349 ASN D 355 -1 N PHE D 351 O ALA D 362 SHEET 3 AA1 5 ARG C 2 TYR C 7 -1 N CYS C 4 O HIS D 352 SHEET 4 AA1 5 CYS D 464 ILE D 467 -1 O PHE D 465 N ILE C 3 SHEET 5 AA1 5 ALA D 457 ASP D 459 -1 N ILE D 458 O ASP D 466 SHEET 1 AA2 2 THR C 15 THR C 18 0 SHEET 2 AA2 2 GLU C 21 PRO C 25 -1 O GLU C 21 N THR C 18 SHEET 1 AA3 2 THR C 29 GLU C 31 0 SHEET 2 AA3 2 ARG C 313 ALA C 315 -1 O LEU C 314 N MET C 30 SHEET 1 AA4 3 VAL C 33 GLU C 34 0 SHEET 2 AA4 3 PHE C 292 GLN C 293 1 O PHE C 292 N GLU C 34 SHEET 3 AA4 3 LYS C 305 TYR C 306 1 O LYS C 305 N GLN C 293 SHEET 1 AA5 2 TYR C 41 ASN C 43 0 SHEET 2 AA5 2 ILE C 272 HIS C 276 1 O CYS C 275 N ASN C 43 SHEET 1 AA6 3 LEU C 50 LEU C 52 0 SHEET 2 AA6 3 ILE C 79 GLU C 81 1 O VAL C 80 N LEU C 52 SHEET 3 AA6 3 ILE C 264 ILE C 265 1 O ILE C 265 N ILE C 79 SHEET 1 AA7 6 GLN C 74 GLY C 75 0 SHEET 2 AA7 6 SER C 110 ARG C 115 -1 O TYR C 111 N GLN C 74 SHEET 3 AA7 6 PHE C 252 LYS C 257 -1 O LEU C 255 N LYS C 112 SHEET 4 AA7 6 ILE C 172 HIS C 180 -1 N ILE C 173 O TYR C 254 SHEET 5 AA7 6 LEU C 247 PRO C 250 -1 O ILE C 248 N GLY C 177 SHEET 6 AA7 6 ILE C 146 TRP C 148 -1 N ASN C 147 O ALA C 249 SHEET 1 AA8 5 GLN C 74 GLY C 75 0 SHEET 2 AA8 5 SER C 110 ARG C 115 -1 O TYR C 111 N GLN C 74 SHEET 3 AA8 5 PHE C 252 LYS C 257 -1 O LEU C 255 N LYS C 112 SHEET 4 AA8 5 ILE C 172 HIS C 180 -1 N ILE C 173 O TYR C 254 SHEET 5 AA8 5 ARG C 225 LEU C 233 -1 O ARG C 225 N HIS C 180 SHEET 1 AA9 2 SER C 130 ASN C 134 0 SHEET 2 AA9 2 GLN C 140 ALA C 141 -1 O ALA C 141 N SER C 130 SHEET 1 AB1 4 ASN C 160 VAL C 165 0 SHEET 2 AB1 4 THR C 238 THR C 243 -1 O LEU C 239 N TYR C 164 SHEET 3 AB1 4 SER C 198 THR C 201 -1 N THR C 201 O LYS C 240 SHEET 4 AB1 4 ASN C 206 PHE C 209 -1 O ARG C 207 N VAL C 200 SHEET 1 AB2 3 GLY C 284 ILE C 286 0 SHEET 2 AB2 3 CYS C 279 THR C 281 -1 N CYS C 279 O ILE C 286 SHEET 3 AB2 3 TYR C 299 GLY C 301 -1 O MET C 300 N GLN C 280 SSBOND 1 CYS C 4 CYS D 464 1555 1555 2.06 SSBOND 2 CYS C 42 CYS C 275 1555 1555 2.04 SSBOND 3 CYS C 55 CYS C 67 1555 1555 2.03 SSBOND 4 CYS C 90 CYS C 133 1555 1555 2.07 SSBOND 5 CYS C 279 CYS C 303 1555 1555 2.05 SSBOND 6 CYS D 471 CYS D 475 1555 1555 2.05 LINK ND2 ASN C 11 C1 NAG C 413 1555 1555 1.44 LINK ND2 ASN C 123 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN C 134 C1 NAG A 1 1555 1555 1.43 LINK ND2 ASN C 287 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN C 294 C1 NAG F 1 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O6 NAG A 1 C1 FUC A 6 1555 1555 1.34 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.44 LINK O3 BMA A 3 C1 MAN A 4 1555 1555 1.44 LINK O6 BMA A 3 C1 MAN A 5 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.45 CRYST1 98.739 98.739 350.383 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010128 0.005847 0.000000 0.00000 SCALE2 0.000000 0.011694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002854 0.00000