HEADER CELL ADHESION 17-JUL-20 6ZTB TITLE CRYSTAL STRUCTURE OF HUMAN P-CADHERIN EC1_EC2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-3; COMPND 3 CHAIN: I; COMPND 4 SYNONYM: PLACENTAL CADHERIN,P-CADHERIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDH3, CDHP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS CALCIUM, CELL MEMBRANE, GLYCOPROTEIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.M.RONDEAU,S.LEHMANN REVDAT 3 31-JAN-24 6ZTB 1 REMARK REVDAT 2 14-JUL-21 6ZTB 1 JRNL REVDAT 1 05-MAY-21 6ZTB 0 JRNL AUTH Q.SHENG,J.A.D'ALESSIO,D.L.MENEZES,C.KARIM,Y.TANG,A.TAM, JRNL AUTH 2 S.CLARK,C.YING,A.CONNOR,K.G.MANSFIELD,J.M.RONDEAU, JRNL AUTH 3 M.GHODDUSI,F.C.GEYER,J.GU,M.E.MCLAUGHLIN,R.NEWCOMBE, JRNL AUTH 4 G.ELLIOT,W.R.TSCHANTZ,S.LEHMANN,C.P.FANTON,K.MILLER,T.HUBER, JRNL AUTH 5 K.G.RENDAHL,U.JEFFRY,N.K.PRYER,E.LEES,P.KWON,J.A.ABRAHAM, JRNL AUTH 6 J.S.DAMIANO,T.J.ABRAMS JRNL TITL PCA062, A P-CADHERIN TARGETING ANTIBODY-DRUG CONJUGATE, JRNL TITL 2 DISPLAYS POTENT ANTITUMOR ACTIVITY AGAINST JRNL TITL 3 P-CADHERIN-EXPRESSING MALIGNANCIES. JRNL REF MOL.CANCER THER. V. 20 1270 2021 JRNL REFN ESSN 1538-8514 JRNL PMID 33879555 JRNL DOI 10.1158/1535-7163.MCT-20-0708 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 78177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3910 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 5744 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2386 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5456 REMARK 3 BIN R VALUE (WORKING SET) : 0.2378 REMARK 3 BIN FREE R VALUE : 0.2535 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 288 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1662 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.95300 REMARK 3 B22 (A**2) : -4.68180 REMARK 3 B33 (A**2) : -0.27120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.68600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.188 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.050 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.050 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.047 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.048 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1708 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2333 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 579 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 50 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 246 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1708 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 236 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 2 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2123 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.52 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.55 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { I|106 - I|208 } REMARK 3 ORIGIN FOR THE GROUP (A): 16.5535 17.2987 6.5369 REMARK 3 T TENSOR REMARK 3 T11: -0.0328 T22: -0.0119 REMARK 3 T33: -0.0247 T12: -0.0328 REMARK 3 T13: 0.0093 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.8920 L22: 1.7700 REMARK 3 L33: 0.6259 L12: 1.6016 REMARK 3 L13: -0.3722 L23: -0.2243 REMARK 3 S TENSOR REMARK 3 S11: -0.1304 S12: -0.0359 S13: -0.0030 REMARK 3 S21: -0.1283 S22: 0.0947 S23: -0.1272 REMARK 3 S31: -0.0621 S32: 0.1060 S33: 0.0357 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { I|209 - I|322 } REMARK 3 ORIGIN FOR THE GROUP (A): -27.4410 0.0498 13.0910 REMARK 3 T TENSOR REMARK 3 T11: -0.0355 T22: -0.0027 REMARK 3 T33: -0.0242 T12: -0.0308 REMARK 3 T13: 0.0114 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 2.4038 L22: 0.7454 REMARK 3 L33: 0.5710 L12: 0.4930 REMARK 3 L13: -0.4632 L23: 0.1481 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: -0.1170 S13: -0.0794 REMARK 3 S21: -0.0131 S22: -0.0530 S23: 0.1106 REMARK 3 S31: 0.0644 S32: -0.0728 S33: 0.1464 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78188 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 57.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.328 REMARK 200 R MERGE (I) : 0.02200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.41 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 1L3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.655M NACL, 85MM HEPES, 15.0% REMARK 280 GLYCEROL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.44450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.26100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.44450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.26100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP I 323 REMARK 465 ASN I 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA I 150 -81.23 -118.37 REMARK 500 LYS I 263 48.01 -94.39 REMARK 500 ALA I 321 -7.64 -55.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA I 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU I 118 OE1 REMARK 620 2 ASP I 174 OD1 90.6 REMARK 620 3 GLU I 176 OE1 88.1 89.3 REMARK 620 4 ASP I 210 OD2 97.6 160.3 108.7 REMARK 620 5 HOH I 528 O 92.4 82.4 171.7 79.5 REMARK 620 6 HOH I 727 O 174.6 84.7 94.6 85.9 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA I 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU I 118 OE2 REMARK 620 2 GLU I 176 OE1 87.7 REMARK 620 3 GLU I 176 OE2 107.6 49.7 REMARK 620 4 ASP I 207 OD1 82.3 119.3 77.1 REMARK 620 5 GLN I 208 O 80.9 153.6 156.7 82.8 REMARK 620 6 ASP I 210 OD1 91.5 75.3 119.3 163.6 81.2 REMARK 620 7 ASP I 243 OD1 162.3 103.6 90.1 103.3 83.1 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA I 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN I 119 O REMARK 620 2 HOH I 660 O 94.1 REMARK 620 3 HOH I 724 O 81.8 168.9 REMARK 620 4 HOH I 773 O 100.0 98.6 92.3 REMARK 620 5 HOH I 779 O 173.7 91.8 92.8 76.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA I 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN I 209 OD1 REMARK 620 2 HIS I 211 O 100.1 REMARK 620 3 ASP I 241 OD1 142.7 98.2 REMARK 620 4 ASP I 241 OD2 157.1 90.4 53.5 REMARK 620 5 ASP I 243 OD2 73.4 80.1 78.1 128.8 REMARK 620 6 ASN I 250 O 79.0 173.9 85.8 88.4 105.3 REMARK 620 7 ASP I 302 OD2 77.1 79.5 138.5 85.1 140.3 94.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA I 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER I 223 O REMARK 620 2 VAL I 234 O 96.3 REMARK 620 3 HOH I 618 O 95.0 94.8 REMARK 620 4 HOH I 675 O 89.9 80.1 173.3 REMARK 620 5 HOH I 686 O 83.1 168.1 97.1 88.0 REMARK 620 6 HOH I 737 O 177.4 86.3 85.0 90.4 94.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA I 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU I 226 O REMARK 620 2 LEU I 286 O 77.6 REMARK 620 3 HOH I 520 O 89.4 136.4 REMARK 620 4 HOH I 646 O 173.9 96.3 94.9 REMARK 620 5 HOH I 722 O 98.7 146.6 76.1 86.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA I 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP I 241 O REMARK 620 2 ASP I 243 O 89.4 REMARK 620 3 HOH I 606 O 78.9 116.7 REMARK 620 4 HOH I 760 O 88.2 132.4 109.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA I 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA I 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA I 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA I 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA I 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA I 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA I 407 DBREF 6ZTB I 108 324 UNP P22223 CADH3_HUMAN 108 324 SEQADV 6ZTB GLY I 106 UNP P22223 EXPRESSION TAG SEQADV 6ZTB PRO I 107 UNP P22223 EXPRESSION TAG SEQRES 1 I 219 GLY PRO ASP TRP VAL VAL ALA PRO ILE SER VAL PRO GLU SEQRES 2 I 219 ASN GLY LYS GLY PRO PHE PRO GLN ARG LEU ASN GLN LEU SEQRES 3 I 219 LYS SER ASN LYS ASP ARG ASP THR LYS ILE PHE TYR SER SEQRES 4 I 219 ILE THR GLY PRO GLY ALA ASP SER PRO PRO GLU GLY VAL SEQRES 5 I 219 PHE ALA VAL GLU LYS GLU THR GLY TRP LEU LEU LEU ASN SEQRES 6 I 219 LYS PRO LEU ASP ARG GLU GLU ILE ALA LYS TYR GLU LEU SEQRES 7 I 219 PHE GLY HIS ALA VAL SER GLU ASN GLY ALA SER VAL GLU SEQRES 8 I 219 ASP PRO MET ASN ILE SER ILE ILE VAL THR ASP GLN ASN SEQRES 9 I 219 ASP HIS LYS PRO LYS PHE THR GLN ASP THR PHE ARG GLY SEQRES 10 I 219 SER VAL LEU GLU GLY VAL LEU PRO GLY THR SER VAL MET SEQRES 11 I 219 GLN VAL THR ALA THR ASP GLU ASP ASP ALA ILE TYR THR SEQRES 12 I 219 TYR ASN GLY VAL VAL ALA TYR SER ILE HIS SER GLN GLU SEQRES 13 I 219 PRO LYS ASP PRO HIS ASP LEU MET PHE THR ILE HIS ARG SEQRES 14 I 219 SER THR GLY THR ILE SER VAL ILE SER SER GLY LEU ASP SEQRES 15 I 219 ARG GLU LYS VAL PRO GLU TYR THR LEU THR ILE GLN ALA SEQRES 16 I 219 THR ASP MET ASP GLY ASP GLY SER THR THR THR ALA VAL SEQRES 17 I 219 ALA VAL VAL GLU ILE LEU ASP ALA ASN ASP ASN HET CA I 401 1 HET CA I 402 1 HET CA I 403 1 HET NA I 404 1 HET NA I 405 1 HET NA I 406 1 HET NA I 407 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 NA 4(NA 1+) FORMUL 9 HOH *340(H2 O) HELIX 1 AA1 SER I 133 ASP I 138 5 6 HELIX 2 AA2 MET I 303 ASP I 306 5 4 SHEET 1 AA1 4 ILE I 114 PRO I 117 0 SHEET 2 AA1 4 MET I 199 THR I 206 1 O ILE I 204 N ILE I 114 SHEET 3 AA1 4 LYS I 180 SER I 189 -1 N LEU I 183 O ILE I 201 SHEET 4 AA1 4 ILE I 141 THR I 146 -1 N PHE I 142 O VAL I 188 SHEET 1 AA2 3 GLN I 126 GLN I 130 0 SHEET 2 AA2 3 TRP I 166 LEU I 169 -1 O LEU I 167 N ASN I 129 SHEET 3 AA2 3 PHE I 158 VAL I 160 -1 N ALA I 159 O LEU I 168 SHEET 1 AA3 2 LYS I 214 PHE I 215 0 SHEET 2 AA3 2 ALA I 239 THR I 240 -1 O THR I 240 N LYS I 214 SHEET 1 AA4 4 THR I 219 LEU I 225 0 SHEET 2 AA4 4 THR I 309 LEU I 319 1 O VAL I 315 N PHE I 220 SHEET 3 AA4 4 GLU I 293 THR I 301 -1 N LEU I 296 O ALA I 314 SHEET 4 AA4 4 ALA I 254 GLU I 261 -1 N GLU I 261 O THR I 295 SHEET 1 AA5 3 SER I 233 GLN I 236 0 SHEET 2 AA5 3 THR I 278 VAL I 281 -1 O ILE I 279 N VAL I 234 SHEET 3 AA5 3 PHE I 270 ILE I 272 -1 N THR I 271 O SER I 280 LINK OE1 GLU I 118 CA CA I 402 1555 1555 2.34 LINK OE2 GLU I 118 CA CA I 403 1555 1555 2.32 LINK O ASN I 119 NA NA I 406 1555 1555 2.45 LINK OD1 ASP I 174 CA CA I 402 1555 1555 2.40 LINK OE1 GLU I 176 CA CA I 402 1555 1555 2.31 LINK OE1 GLU I 176 CA CA I 403 1555 1555 2.78 LINK OE2 GLU I 176 CA CA I 403 1555 1555 2.37 LINK OD1 ASP I 207 CA CA I 403 1555 1555 2.32 LINK O GLN I 208 CA CA I 403 1555 1555 2.46 LINK OD1 ASN I 209 CA CA I 401 1555 1555 2.38 LINK OD2 ASP I 210 CA CA I 402 1555 1555 2.33 LINK OD1 ASP I 210 CA CA I 403 1555 1555 2.34 LINK O HIS I 211 CA CA I 401 1555 1555 2.35 LINK O SER I 223 NA NA I 405 1555 1555 2.32 LINK O GLU I 226 NA NA I 407 1555 1555 2.80 LINK O VAL I 234 NA NA I 405 1555 1555 2.35 LINK OD1 ASP I 241 CA CA I 401 1555 1555 2.54 LINK OD2 ASP I 241 CA CA I 401 1555 1555 2.42 LINK O ASP I 241 NA NA I 404 1555 1555 2.57 LINK OD2 ASP I 243 CA CA I 401 1555 1555 2.34 LINK OD1 ASP I 243 CA CA I 403 1555 1555 2.29 LINK O ASP I 243 NA NA I 404 1555 1555 2.31 LINK O ASN I 250 CA CA I 401 1555 1555 2.42 LINK O LEU I 286 NA NA I 407 1555 1555 2.39 LINK OD2 ASP I 302 CA CA I 401 1555 1555 2.32 LINK CA CA I 402 O HOH I 528 1555 1555 2.38 LINK CA CA I 402 O HOH I 727 1555 1555 2.38 LINK NA NA I 404 O HOH I 606 1555 1555 2.45 LINK NA NA I 404 O HOH I 760 1555 1555 2.49 LINK NA NA I 405 O HOH I 618 1555 1555 2.42 LINK NA NA I 405 O HOH I 675 1555 1555 2.42 LINK NA NA I 405 O HOH I 686 1555 1555 2.41 LINK NA NA I 405 O HOH I 737 1555 1555 2.46 LINK NA NA I 406 O HOH I 660 1555 2556 2.37 LINK NA NA I 406 O HOH I 724 1555 1555 2.41 LINK NA NA I 406 O HOH I 773 1555 1555 2.44 LINK NA NA I 406 O HOH I 779 1555 2556 2.50 LINK NA NA I 407 O HOH I 520 1555 3445 2.64 LINK NA NA I 407 O HOH I 646 1555 3445 2.24 LINK NA NA I 407 O HOH I 722 1555 3445 2.55 CISPEP 1 GLY I 122 PRO I 123 0 7.64 CISPEP 2 PHE I 124 PRO I 125 0 3.03 CISPEP 3 PRO I 153 PRO I 154 0 -0.79 CISPEP 4 GLU I 261 PRO I 262 0 -8.98 CISPEP 5 ASP I 264 PRO I 265 0 7.72 SITE 1 AC1 6 ASN I 209 HIS I 211 ASP I 241 ASP I 243 SITE 2 AC1 6 ASN I 250 ASP I 302 SITE 1 AC2 6 GLU I 118 ASP I 174 GLU I 176 ASP I 210 SITE 2 AC2 6 HOH I 528 HOH I 727 SITE 1 AC3 6 GLU I 118 GLU I 176 ASP I 207 GLN I 208 SITE 2 AC3 6 ASP I 210 ASP I 243 SITE 1 AC4 4 ASP I 241 ASP I 243 HOH I 606 HOH I 760 SITE 1 AC5 6 SER I 223 VAL I 234 HOH I 618 HOH I 675 SITE 2 AC5 6 HOH I 686 HOH I 737 SITE 1 AC6 5 ASN I 119 HOH I 660 HOH I 724 HOH I 773 SITE 2 AC6 5 HOH I 779 SITE 1 AC7 5 GLU I 226 LEU I 286 HOH I 520 HOH I 646 SITE 2 AC7 5 HOH I 722 CRYST1 120.889 76.522 46.208 90.00 107.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008272 0.000000 0.002654 0.00000 SCALE2 0.000000 0.013068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022728 0.00000