HEADER ISOMERASE 17-JUL-20 6ZTC TITLE CRYSTAL STRUCTURE OF PROSTAGLANDIN D2 SYNTHASE IN COMPLEX WITH TITLE 2 FRAGMENT 1A AT 1.84A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: H-PGDS,GST CLASS-SIGMA,GLUTATHIONE S-TRANSFERASE, COMPND 5 GLUTATHIONE-DEPENDENT PGD SYNTHASE,GLUTATHIONE-REQUIRING COMPND 6 PROSTAGLANDIN D SYNTHASE,PROSTAGLANDIN-H2 D-ISOMERASE; COMPND 7 EC: 5.3.99.2,2.5.1.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HPGDS, GSTS, PGDS, PTGDS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROSTAGLANDIN BIOSYNTHESIS, FATTY ACID BIOSYNTHESIS, PROSTAGLANDIN D2 KEYWDS 2 SYNTHASE, PGDS, ASTHMA, CYTOPLASM, ISOMERASE, LIPID SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR D.O.SOMERS REVDAT 3 01-MAY-24 6ZTC 1 REMARK REVDAT 2 29-MAR-23 6ZTC 1 JRNL REVDAT 1 28-JUL-21 6ZTC 0 JRNL AUTH C.A.SCHULTE,D.N.DEATON,E.DIAZ,Y.DO,R.T.GAMPE,J.H.GUSS, JRNL AUTH 2 A.P.HANCOCK,H.HOBBS,S.T.HODGSON,J.HOLT,M.R.JEUNE,K.M.KAHLER, JRNL AUTH 3 H.F.KRAMER,J.LE,P.N.MORTENSON,C.MUSETTI,R.T.NOLTE, JRNL AUTH 4 L.A.ORBAND-MILLER,G.E.PECKHAM,K.G.PETROV,B.L.PIETRAK, JRNL AUTH 5 C.POOLE,D.J.PRICE,G.SAXTY,A.SHILLINGS,T.L.SMALLEY JR., JRNL AUTH 6 D.O.SOMERS,E.L.STEWART,J.D.STUART,S.A.THOMSON JRNL TITL A KNOWLEDGE-BASED, STRUCTURAL-AIDED DISCOVERY OF A NOVEL JRNL TITL 2 CLASS OF 2-PHENYLIMIDAZO[1,2-A]PYRIDINE-6-CARBOXAMIDE H-PGDS JRNL TITL 3 INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 47 28113 2021 JRNL REFN ESSN 1464-3405 JRNL PMID 33991628 JRNL DOI 10.1016/J.BMCL.2021.128113 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 35983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1890 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2553 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 602 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.824 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3528 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4797 ; 1.402 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 4.881 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;31.676 ;22.410 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;12.772 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.344 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2776 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6ZTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE 6.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 21.054 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : 0.48500 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: COORDINATES DETERMINED IN-HOUSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, DIOXANE, TRIS-HCL, GLYCEROL., REMARK 280 PH 8.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.08150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 301 O HOH B 317 1.96 REMARK 500 OE1 GLU A 30 O HOH A 301 2.13 REMARK 500 O HOH A 359 O HOH B 305 2.13 REMARK 500 O HOH A 306 O HOH A 532 2.16 REMARK 500 O ALA B 78 O HOH B 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 349 O HOH B 410 2645 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 63 110.22 79.46 REMARK 500 MET B 11 146.80 -172.24 REMARK 500 PRO B 40 -39.84 -37.98 REMARK 500 PRO B 47 -36.26 -38.93 REMARK 500 GLN B 63 110.19 77.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 576 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B 626 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 351 O REMARK 620 2 HOH A 385 O 91.8 REMARK 620 3 HOH A 442 O 98.1 95.5 REMARK 620 4 HOH B 340 O 178.3 89.7 81.0 REMARK 620 5 HOH B 352 O 81.6 98.8 165.6 99.0 REMARK 620 6 HOH B 392 O 92.7 170.5 75.6 85.7 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QPN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QPN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 DBREF 6ZTC A 1 199 UNP O60760 HPGDS_HUMAN 1 199 DBREF 6ZTC B 1 199 UNP O60760 HPGDS_HUMAN 1 199 SEQADV 6ZTC GLY A 0 UNP O60760 EXPRESSION TAG SEQADV 6ZTC GLY B 0 UNP O60760 EXPRESSION TAG SEQRES 1 A 200 GLY MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG SEQRES 2 A 200 GLY ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU SEQRES 3 A 200 ASP ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP SEQRES 4 A 200 TRP PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE SEQRES 5 A 200 PRO ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER SEQRES 6 A 200 LEU ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU SEQRES 7 A 200 ALA GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA SEQRES 8 A 200 ILE VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO SEQRES 9 A 200 TRP ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE SEQRES 10 A 200 ASN GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN SEQRES 11 A 200 ASP LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE SEQRES 12 A 200 GLY ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE SEQRES 13 A 200 CYS SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU SEQRES 14 A 200 ASP ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL SEQRES 15 A 200 GLN ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG SEQRES 16 A 200 PRO GLN THR LYS LEU SEQRES 1 B 200 GLY MET PRO ASN TYR LYS LEU THR TYR PHE ASN MET ARG SEQRES 2 B 200 GLY ARG ALA GLU ILE ILE ARG TYR ILE PHE ALA TYR LEU SEQRES 3 B 200 ASP ILE GLN TYR GLU ASP HIS ARG ILE GLU GLN ALA ASP SEQRES 4 B 200 TRP PRO GLU ILE LYS SER THR LEU PRO PHE GLY LYS ILE SEQRES 5 B 200 PRO ILE LEU GLU VAL ASP GLY LEU THR LEU HIS GLN SER SEQRES 6 B 200 LEU ALA ILE ALA ARG TYR LEU THR LYS ASN THR ASP LEU SEQRES 7 B 200 ALA GLY ASN THR GLU MET GLU GLN CYS HIS VAL ASP ALA SEQRES 8 B 200 ILE VAL ASP THR LEU ASP ASP PHE MET SER CYS PHE PRO SEQRES 9 B 200 TRP ALA GLU LYS LYS GLN ASP VAL LYS GLU GLN MET PHE SEQRES 10 B 200 ASN GLU LEU LEU THR TYR ASN ALA PRO HIS LEU MET GLN SEQRES 11 B 200 ASP LEU ASP THR TYR LEU GLY GLY ARG GLU TRP LEU ILE SEQRES 12 B 200 GLY ASN SER VAL THR TRP ALA ASP PHE TYR TRP GLU ILE SEQRES 13 B 200 CYS SER THR THR LEU LEU VAL PHE LYS PRO ASP LEU LEU SEQRES 14 B 200 ASP ASN HIS PRO ARG LEU VAL THR LEU ARG LYS LYS VAL SEQRES 15 B 200 GLN ALA ILE PRO ALA VAL ALA ASN TRP ILE LYS ARG ARG SEQRES 16 B 200 PRO GLN THR LYS LEU HET GSH A 201 20 HET MG A 202 1 HET QPN A 203 20 HET GOL A 204 6 HET GOL A 205 6 HET GSH B 201 20 HET QPN B 202 20 HET GOL B 203 6 HETNAM GSH GLUTATHIONE HETNAM MG MAGNESIUM ION HETNAM QPN 1-[1-(3-FLUOROPHENYL)-6,7-DIHYDRO-4~{H}-PYRAZOLO[4,3- HETNAM 2 QPN C]PYRIDIN-5-YL]PROPAN-1-ONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GSH 2(C10 H17 N3 O6 S) FORMUL 4 MG MG 2+ FORMUL 5 QPN 2(C15 H16 F N3 O) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 11 HOH *602(H2 O) HELIX 1 AA1 ARG A 12 ARG A 14 5 3 HELIX 2 AA2 ALA A 15 LEU A 25 1 11 HELIX 3 AA3 GLU A 35 ALA A 37 5 3 HELIX 4 AA4 ASP A 38 SER A 44 1 7 HELIX 5 AA5 GLN A 63 LYS A 73 1 11 HELIX 6 AA6 THR A 81 CYS A 101 1 21 HELIX 7 AA7 LYS A 108 ASN A 123 1 16 HELIX 8 AA8 ASN A 123 GLY A 136 1 14 HELIX 9 AA9 THR A 147 LYS A 164 1 18 HELIX 10 AB1 HIS A 171 ILE A 184 1 14 HELIX 11 AB2 ILE A 184 ARG A 194 1 11 HELIX 12 AB3 ARG B 12 ARG B 14 5 3 HELIX 13 AB4 ALA B 15 ASP B 26 1 12 HELIX 14 AB5 ASP B 38 SER B 44 1 7 HELIX 15 AB6 GLN B 63 LYS B 73 1 11 HELIX 16 AB7 THR B 81 PHE B 102 1 22 HELIX 17 AB8 LYS B 108 TYR B 122 1 15 HELIX 18 AB9 TYR B 122 GLY B 136 1 15 HELIX 19 AC1 THR B 147 LYS B 164 1 18 HELIX 20 AC2 HIS B 171 ILE B 184 1 14 HELIX 21 AC3 ILE B 184 ARG B 194 1 11 SHEET 1 AA1 4 GLU A 30 ILE A 34 0 SHEET 2 AA1 4 TYR A 4 PHE A 9 1 N LEU A 6 O GLU A 30 SHEET 3 AA1 4 ILE A 53 VAL A 56 -1 O GLU A 55 N LYS A 5 SHEET 4 AA1 4 LEU A 59 HIS A 62 -1 O LEU A 59 N VAL A 56 SHEET 1 AA2 4 GLU B 30 ILE B 34 0 SHEET 2 AA2 4 TYR B 4 PHE B 9 1 N TYR B 4 O GLU B 30 SHEET 3 AA2 4 ILE B 53 VAL B 56 -1 O GLU B 55 N LYS B 5 SHEET 4 AA2 4 LEU B 59 HIS B 62 -1 O LEU B 61 N LEU B 54 LINK MG MG A 202 O HOH A 351 1555 1555 2.12 LINK MG MG A 202 O HOH A 385 1555 1555 2.11 LINK MG MG A 202 O HOH A 442 1555 1555 2.13 LINK MG MG A 202 O HOH B 340 1555 1555 2.05 LINK MG MG A 202 O HOH B 352 1555 1555 2.11 LINK MG MG A 202 O HOH B 392 1555 1555 2.30 CISPEP 1 ILE A 51 PRO A 52 0 5.70 CISPEP 2 ILE B 51 PRO B 52 0 4.71 SITE 1 AC1 17 TYR A 8 ARG A 14 TRP A 39 LYS A 43 SITE 2 AC1 17 LYS A 50 ILE A 51 GLN A 63 SER A 64 SITE 3 AC1 17 QPN A 203 HOH A 324 HOH A 340 HOH A 374 SITE 4 AC1 17 HOH A 386 HOH A 421 HOH A 424 HOH A 450 SITE 5 AC1 17 ASP B 97 SITE 1 AC2 6 HOH A 351 HOH A 385 HOH A 442 HOH B 340 SITE 2 AC2 6 HOH B 352 HOH B 392 SITE 1 AC3 10 GLY A 13 ARG A 14 ASP A 96 MET A 99 SITE 2 AC3 10 SER A 100 TRP A 104 TYR A 152 LEU A 199 SITE 3 AC3 10 GSH A 201 HOH A 355 SITE 1 AC4 4 GLU A 82 HOH A 359 TYR B 70 LYS B 73 SITE 1 AC5 3 GLU A 55 THR A 60 HOH A 481 SITE 1 AC6 16 ASP A 97 TYR B 8 ARG B 14 TRP B 39 SITE 2 AC6 16 LYS B 43 LYS B 50 ILE B 51 GLN B 63 SITE 3 AC6 16 SER B 64 QPN B 202 HOH B 328 HOH B 346 SITE 4 AC6 16 HOH B 397 HOH B 404 HOH B 449 HOH B 502 SITE 1 AC7 13 TYR B 8 MET B 11 GLY B 13 ARG B 14 SITE 2 AC7 13 ASP B 96 MET B 99 SER B 100 TRP B 104 SITE 3 AC7 13 TYR B 152 THR B 159 LEU B 199 GSH B 201 SITE 4 AC7 13 HOH B 332 SITE 1 AC8 4 LYS B 112 HOH B 307 HOH B 316 HOH B 487 CRYST1 49.071 68.163 68.517 90.00 96.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020379 0.000000 0.002393 0.00000 SCALE2 0.000000 0.014671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014695 0.00000