HEADER CELL CYCLE 20-JUL-20 6ZTG TITLE SPOR PROTEIN DEDD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN DEDD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DEDD, BN17_16191; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRESEPTAL, PEPTIDOGLYCAN SYNTHESIS, BACTERIA, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.PAZOS,K.PETERS,A.BOES,Y.SAFAEI,C.KENWARD,N.A.CAVENEY,C.LAGURI, AUTHOR 2 E.BREUKINK,N.C.J.STRYNADKA,J.P.SIMORRE,M.TERRAK,W.VOLLMER REVDAT 2 14-JUN-23 6ZTG 1 REMARK REVDAT 1 11-NOV-20 6ZTG 0 JRNL AUTH M.PAZOS,K.PETERS,A.BOES,Y.SAFAEI,C.KENWARD,N.A.CAVENEY, JRNL AUTH 2 C.LAGURI,E.BREUKINK,N.C.J.STRYNADKA,J.P.SIMORRE,M.TERRAK, JRNL AUTH 3 W.VOLLMER JRNL TITL SPOR PROTEINS ARE REQUIRED FOR FUNCTIONALITY OF CLASS A JRNL TITL 2 PENICILLIN-BINDING PROTEINS IN ESCHERICHIA COLI. JRNL REF MBIO V. 11 2020 JRNL REFN ESSN 2150-7511 JRNL PMID 33144379 JRNL DOI 10.1128/MBIO.02796-20 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, ARIA REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110099. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 1.08 MM [U-13C; U-15N] DEDD, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 600 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 32 OE1 GLU A 37 1.57 REMARK 500 O SER A 176 HG1 THR A 177 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3 TYR A 172 CE1 TYR A 172 CZ -0.103 REMARK 500 3 TYR A 172 CZ TYR A 172 CE2 0.096 REMARK 500 4 TYR A 172 CE1 TYR A 172 CZ -0.111 REMARK 500 4 TYR A 172 CZ TYR A 172 CE2 0.113 REMARK 500 9 TYR A 144 CE1 TYR A 144 CZ 0.097 REMARK 500 9 TYR A 144 CZ TYR A 144 CE2 -0.099 REMARK 500 10 TYR A 144 CE1 TYR A 144 CZ 0.082 REMARK 500 10 TYR A 144 CZ TYR A 144 CE2 -0.081 REMARK 500 11 TYR A 169 CE1 TYR A 169 CZ -0.082 REMARK 500 11 TYR A 172 CE1 TYR A 172 CZ -0.116 REMARK 500 11 TYR A 172 CZ TYR A 172 CE2 0.111 REMARK 500 13 TYR A 172 CE1 TYR A 172 CZ -0.120 REMARK 500 13 TYR A 172 CZ TYR A 172 CE2 0.111 REMARK 500 15 TYR A 172 CE1 TYR A 172 CZ -0.104 REMARK 500 15 TYR A 172 CZ TYR A 172 CE2 0.101 REMARK 500 16 TYR A 169 CE1 TYR A 169 CZ -0.078 REMARK 500 17 TYR A 172 CE1 TYR A 172 CZ -0.099 REMARK 500 17 TYR A 172 CZ TYR A 172 CE2 0.089 REMARK 500 19 TYR A 172 CE1 TYR A 172 CZ -0.100 REMARK 500 19 TYR A 172 CZ TYR A 172 CE2 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 33 -65.50 165.05 REMARK 500 1 TYR A 34 100.50 -175.59 REMARK 500 1 GLN A 35 178.65 72.87 REMARK 500 1 PHE A 38 -39.24 -147.04 REMARK 500 1 ALA A 40 64.31 60.11 REMARK 500 1 ALA A 47 -31.80 -133.08 REMARK 500 1 ASP A 54 112.04 -174.34 REMARK 500 1 MET A 55 -46.98 176.63 REMARK 500 1 MET A 56 -49.07 -144.25 REMARK 500 1 ALA A 58 179.61 64.95 REMARK 500 1 THR A 60 -75.70 70.94 REMARK 500 1 THR A 65 91.64 61.81 REMARK 500 1 GLU A 69 -81.61 62.51 REMARK 500 1 ALA A 71 -71.06 66.43 REMARK 500 1 ALA A 72 -55.05 -170.71 REMARK 500 1 GLU A 73 -74.33 67.36 REMARK 500 1 GLU A 74 -62.84 -157.53 REMARK 500 1 ALA A 77 -75.67 -158.53 REMARK 500 1 ALA A 80 -77.79 67.04 REMARK 500 1 ALA A 88 92.94 -160.27 REMARK 500 1 ALA A 92 -156.02 -93.93 REMARK 500 1 ASN A 93 -140.40 68.07 REMARK 500 1 GLU A 96 30.72 -142.53 REMARK 500 1 PHE A 97 88.53 63.83 REMARK 500 1 LYS A 108 118.92 76.05 REMARK 500 1 VAL A 112 51.00 -114.72 REMARK 500 1 GLU A 113 85.49 61.35 REMARK 500 1 LYS A 130 115.69 70.20 REMARK 500 1 VAL A 132 47.41 -82.58 REMARK 500 1 GLU A 135 -81.32 -77.48 REMARK 500 1 LYS A 136 117.61 76.89 REMARK 500 1 ALA A 137 -82.08 65.49 REMARK 500 1 ALA A 138 145.08 174.55 REMARK 500 1 THR A 140 -20.03 76.87 REMARK 500 1 LYS A 142 58.08 -104.06 REMARK 500 1 ALA A 150 103.39 -170.76 REMARK 500 2 ALA A 39 -76.69 -81.43 REMARK 500 2 ILE A 41 67.76 37.12 REMARK 500 2 ALA A 47 9.23 -150.26 REMARK 500 2 ASP A 54 42.90 -76.91 REMARK 500 2 MET A 56 -50.66 -120.19 REMARK 500 2 ALA A 58 -0.32 70.12 REMARK 500 2 ALA A 59 -86.08 -96.37 REMARK 500 2 THR A 65 -77.39 -70.48 REMARK 500 2 GLN A 66 81.61 42.82 REMARK 500 2 GLU A 74 177.57 67.57 REMARK 500 2 VAL A 75 -79.43 67.28 REMARK 500 2 ALA A 77 -163.74 -112.96 REMARK 500 2 SER A 84 -45.53 72.71 REMARK 500 2 ALA A 91 81.83 57.56 REMARK 500 REMARK 500 THIS ENTRY HAS 601 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 TYR A 144 0.05 SIDE CHAIN REMARK 500 10 TYR A 144 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34534 RELATED DB: BMRB REMARK 900 SPOR PROTEIN DEDD DBREF 6ZTG A 28 220 UNP J7QTL6 J7QTL6_ECOLX 19 211 SEQRES 1 A 193 ASP GLY GLN LYS LYS HIS TYR GLN ASP GLU PHE ALA ALA SEQRES 2 A 193 ILE PRO LEU VAL PRO LYS ALA GLY ASP ARG ASP GLU PRO SEQRES 3 A 193 ASP MET MET PRO ALA ALA THR GLN ALA LEU PRO THR GLN SEQRES 4 A 193 PRO PRO GLU GLY ALA ALA GLU GLU VAL ARG ALA GLY ASP SEQRES 5 A 193 ALA ALA ALA PRO SER LEU ASP PRO ALA THR ILE ALA ALA SEQRES 6 A 193 ASN ASN THR GLU PHE GLU PRO GLU PRO ALA PRO VAL ALA SEQRES 7 A 193 PRO PRO LYS PRO LYS PRO VAL GLU PRO PRO LYS PRO LYS SEQRES 8 A 193 VAL GLU ALA PRO PRO ALA PRO LYS PRO GLU PRO LYS PRO SEQRES 9 A 193 VAL VAL GLU GLU LYS ALA ALA PRO THR GLY LYS ALA TYR SEQRES 10 A 193 VAL VAL GLN LEU GLY ALA LEU LYS ASN ALA ASP LYS VAL SEQRES 11 A 193 ASN GLU ILE VAL GLY LYS LEU ARG GLY ALA GLY TYR ARG SEQRES 12 A 193 VAL TYR THR SER PRO SER THR PRO VAL GLN GLY LYS ILE SEQRES 13 A 193 THR ARG ILE LEU VAL GLY PRO ASP ALA SER LYS ASP LYS SEQRES 14 A 193 LEU LYS GLY SER LEU GLY GLU LEU LYS GLN LEU SER GLY SEQRES 15 A 193 LEU SER GLY VAL VAL MET GLY TYR THR PRO ASN HELIX 1 AA1 ALA A 92 GLU A 96 5 5 HELIX 2 AA2 ASN A 153 ARG A 165 1 13 HELIX 3 AA3 GLY A 166 GLY A 168 5 3 HELIX 4 AA4 SER A 193 GLY A 199 1 7 HELIX 5 AA5 SER A 200 SER A 208 1 9 SHEET 1 AA1 4 VAL A 171 THR A 173 0 SHEET 2 AA1 4 THR A 184 ASP A 191 -1 O LEU A 187 N TYR A 172 SHEET 3 AA1 4 ALA A 143 LEU A 151 -1 N VAL A 146 O VAL A 188 SHEET 4 AA1 4 VAL A 213 TYR A 217 -1 O MET A 215 N VAL A 145 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1