HEADER SUGAR BINDING PROTEIN 23-JUL-20 6ZUL TITLE CRYSTAL STRUCTURE OF DIMETHYLATED RSL IN COMPLEX WITH CUCURBIT[7]URIL TITLE 2 AND ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUCOSE-BINDING LECTIN PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: PUTATIVE FUCOSE-BINDING LECTIN PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA SOLANACEARUM; SOURCE 3 ORGANISM_TAXID: 305; SOURCE 4 GENE: E7Z57_08365, RSP795_21825, RSP822_19650, RUN39_V1_50103; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CUCURBITURIL, MOLECULAR GLUE, CRYSTAL ENGINEERING, DIMETHYLLYSINE, KEYWDS 2 ZINC, B-PROPELLER, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.GUAGNINI,S.ENGILBERGE,R.J.FLOOD,K.O.RAMBERG,P.B.CROWLEY REVDAT 2 31-JAN-24 6ZUL 1 REMARK REVDAT 1 25-NOV-20 6ZUL 0 JRNL AUTH F.GUAGNINI,S.ENGILBERGE,R.J.FLOOD,K.O.RAMBERG,P.B.CROWLEY JRNL TITL METAL-MEDIATED PROTEIN-CUCURBITURIL CRYSTALLINE JRNL TITL 2 ARCHITECTURES JRNL REF CRYST.GROWTH DES. 2020 JRNL REFN ESSN 1528-7505 JRNL DOI 10.1021/ACS.CGD.0C01023 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 73866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4370 - 4.7883 0.97 2792 97 0.1653 0.1794 REMARK 3 2 4.7883 - 3.8013 0.99 2747 169 0.1399 0.1427 REMARK 3 3 3.8013 - 3.3210 0.98 2807 114 0.1502 0.1996 REMARK 3 4 3.3210 - 3.0175 0.97 2721 158 0.1431 0.1665 REMARK 3 5 3.0175 - 2.8012 0.97 2685 153 0.1640 0.2130 REMARK 3 6 2.8012 - 2.6361 0.97 2731 162 0.1622 0.2056 REMARK 3 7 2.6361 - 2.5041 0.98 2736 137 0.1744 0.2169 REMARK 3 8 2.5041 - 2.3951 0.97 2771 109 0.1632 0.1873 REMARK 3 9 2.3951 - 2.3029 0.98 2783 107 0.1674 0.1945 REMARK 3 10 2.3029 - 2.2234 0.96 2756 137 0.1634 0.1936 REMARK 3 11 2.2234 - 2.1539 0.96 2714 151 0.1676 0.2014 REMARK 3 12 2.1539 - 2.0923 0.97 2683 159 0.1691 0.2153 REMARK 3 13 2.0923 - 2.0373 0.97 2727 165 0.1636 0.2015 REMARK 3 14 2.0373 - 1.9876 0.97 2714 134 0.1559 0.1986 REMARK 3 15 1.9876 - 1.9424 0.96 2703 132 0.1619 0.2027 REMARK 3 16 1.9424 - 1.9010 0.96 2774 124 0.1599 0.2151 REMARK 3 17 1.9010 - 1.8630 0.96 2656 142 0.1569 0.2012 REMARK 3 18 1.8630 - 1.8279 0.96 2734 148 0.1702 0.2279 REMARK 3 19 1.8279 - 1.7952 0.94 2619 138 0.1863 0.2209 REMARK 3 20 1.7952 - 1.7648 0.94 2680 160 0.2412 0.2816 REMARK 3 21 1.7648 - 1.7363 0.94 2544 163 0.2988 0.3297 REMARK 3 22 1.7363 - 1.7096 0.93 2653 149 0.2949 0.3632 REMARK 3 23 1.7096 - 1.6845 0.94 2625 148 0.2846 0.3053 REMARK 3 24 1.6845 - 1.6607 0.93 2638 148 0.2882 0.3545 REMARK 3 25 1.6607 - 1.6383 0.93 2580 162 0.3350 0.3713 REMARK 3 26 1.6383 - 1.6200 0.93 2597 130 0.3552 0.4508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4976 REMARK 3 ANGLE : 0.925 7046 REMARK 3 CHIRALITY : 0.057 640 REMARK 3 PLANARITY : 0.015 1059 REMARK 3 DIHEDRAL : 9.729 2877 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -7.3195 18.0442 14.5615 REMARK 3 T TENSOR REMARK 3 T11: 0.0272 T22: 0.0309 REMARK 3 T33: 0.0329 T12: -0.0018 REMARK 3 T13: 0.0016 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.0633 L22: 0.0930 REMARK 3 L33: 0.0434 L12: -0.0148 REMARK 3 L13: -0.0025 L23: 0.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.0099 S13: -0.0062 REMARK 3 S21: 0.0086 S22: 0.0200 S23: 0.0037 REMARK 3 S31: 0.0006 S32: 0.0034 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 2 THROUGH 89) REMARK 3 SELECTION : (CHAIN B AND (RESID 2 THROUGH 82 OR REMARK 3 (RESID 83 AND (NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE OR NAME NZ OR NAME CH1 OR NAME REMARK 3 CH2)) OR RESID 84 THROUGH 89)) REMARK 3 ATOM PAIRS NUMBER : 2264 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 2 THROUGH 89) REMARK 3 SELECTION : (CHAIN C AND (RESID 2 THROUGH 82 OR REMARK 3 (RESID 83 AND (NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE OR NAME NZ OR NAME CH1 OR NAME REMARK 3 CH2)) OR RESID 84 THROUGH 89)) REMARK 3 ATOM PAIRS NUMBER : 2264 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 2 THROUGH 89) REMARK 3 SELECTION : (CHAIN D AND (RESID 2 THROUGH 82 OR REMARK 3 (RESID 83 AND (NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE OR NAME NZ OR NAME CH1 OR NAME REMARK 3 CH2)) OR RESID 84 THROUGH 89)) REMARK 3 ATOM PAIRS NUMBER : 2264 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 2 THROUGH 89) REMARK 3 SELECTION : (CHAIN E AND (RESID 2 THROUGH 82 OR REMARK 3 (RESID 83 AND (NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE OR NAME NZ OR NAME CH1 OR NAME REMARK 3 CH2)) OR RESID 84 THROUGH 89)) REMARK 3 ATOM PAIRS NUMBER : 2264 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 2 THROUGH 89) REMARK 3 SELECTION : (CHAIN F AND (RESID 2 THROUGH 82 OR REMARK 3 (RESID 83 AND (NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD OR REMARK 3 NAME CE OR NAME NZ OR NAME CH1 OR NAME REMARK 3 CH2)) OR RESID 84 THROUGH 89)) REMARK 3 ATOM PAIRS NUMBER : 2264 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZUL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98013 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73881 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.617 REMARK 200 RESOLUTION RANGE LOW (A) : 43.437 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6F7W POLYALANINE REMARK 200 REMARK 200 REMARK: HEXAGONAL PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1 M BIS-TRIS PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MLY A 83 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA E 88 -68.77 -120.61 REMARK 500 THR E 89 53.63 96.45 REMARK 500 ALA F 88 -63.18 -122.40 REMARK 500 THR F 89 60.15 87.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SNM A 1 N REMARK 620 2 SNM A 1 OG 81.6 REMARK 620 3 HIS F 60 NE2 119.7 87.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 60 NE2 REMARK 620 2 SNM D 1 N 60.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QQ7 A 101 O12 REMARK 620 2 QQ7 A 101 O 86.0 REMARK 620 3 QQ7 C 101 O07 72.4 50.1 REMARK 620 4 QQ7 C 101 O10 70.8 54.0 4.1 REMARK 620 5 QQ7 E 101 O 74.7 51.9 3.2 4.2 REMARK 620 6 QQ7 E 101 O12 71.9 54.7 4.6 1.4 3.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QQ7 A 101 O06 REMARK 620 2 QQ7 A 101 O 84.7 REMARK 620 3 QQ7 C 101 O02 91.0 55.4 REMARK 620 4 QQ7 C 101 O07 90.2 51.1 4.3 REMARK 620 5 QQ7 E 101 O06 90.9 55.1 0.3 4.0 REMARK 620 6 QQ7 E 101 O 93.1 52.9 3.5 3.2 3.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QQ7 B 101 O06 REMARK 620 2 QQ7 B 101 O 87.9 REMARK 620 3 QQ7 D 101 O07 50.6 73.4 REMARK 620 4 QQ7 D 101 O10 54.6 71.8 4.1 REMARK 620 5 QQ7 F 101 O02 52.4 75.8 3.3 4.3 REMARK 620 6 QQ7 F 101 O07 55.3 72.9 4.7 1.4 3.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 QQ7 B 101 O04 REMARK 620 2 QQ7 B 101 O06 85.0 REMARK 620 3 QQ7 D 101 O02 91.0 53.7 REMARK 620 4 QQ7 D 101 O07 90.3 49.4 4.2 REMARK 620 5 QQ7 F 101 O02 93.2 51.3 3.4 3.3 REMARK 620 6 QQ7 F 101 O03 90.9 53.5 0.2 4.1 3.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6F7W RELATED DB: PDB REMARK 900 6F7W CONTAINS THE SAME PROTEIN COMPLEXED WITH CUCURBIT[7]URIL REMARK 900 RELATED ID: 6SU0 RELATED DB: PDB REMARK 900 6SU0 CONTAINS A VARIANT OF THE SAME PROTEIN COMPLEXED WITH REMARK 900 CUCURBIT[7]URIL REMARK 900 RELATED ID: 6ZUK RELATED DB: PDB REMARK 900 RELATED ID: 6ZUM RELATED DB: PDB DBREF1 6ZUL A 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6ZUL A A0A0S4TLR1 2 91 DBREF1 6ZUL B 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6ZUL B A0A0S4TLR1 2 91 DBREF1 6ZUL C 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6ZUL C A0A0S4TLR1 2 91 DBREF1 6ZUL D 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6ZUL D A0A0S4TLR1 2 91 DBREF1 6ZUL E 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6ZUL E A0A0S4TLR1 2 91 DBREF1 6ZUL F 1 90 UNP A0A0S4TLR1_RALSL DBREF2 6ZUL F A0A0S4TLR1 2 91 SEQRES 1 A 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 A 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 A 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 A 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 A 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 A 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 A 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN SEQRES 1 B 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 B 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 B 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 B 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 B 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 B 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 B 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN SEQRES 1 C 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 C 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 C 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 C 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 C 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 C 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 C 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN SEQRES 1 D 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 D 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 D 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 D 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 D 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 D 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 D 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN SEQRES 1 E 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 E 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 E 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 E 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 E 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 E 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 E 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN SEQRES 1 F 90 SNM SER VAL GLN THR ALA ALA THR SER TRP GLY THR VAL SEQRES 2 F 90 PRO SER ILE ARG VAL TYR THR ALA ASN ASN GLY MLY ILE SEQRES 3 F 90 THR GLU ARG CYS TRP ASP GLY MLY GLY TRP TYR THR GLY SEQRES 4 F 90 ALA PHE ASN GLU PRO GLY ASP ASN VAL SER VAL THR SER SEQRES 5 F 90 TRP LEU VAL GLY SER ALA ILE HIS ILE ARG VAL TYR ALA SEQRES 6 F 90 SER THR GLY THR THR THR THR GLU TRP CYS TRP ASP GLY SEQRES 7 F 90 ASN GLY TRP THR MLY GLY ALA TYR THR ALA THR ASN MODRES 6ZUL SNM A 1 SER MODIFIED RESIDUE MODRES 6ZUL MLY A 25 LYS MODIFIED RESIDUE MODRES 6ZUL MLY A 34 LYS MODIFIED RESIDUE MODRES 6ZUL MLY A 83 LYS MODIFIED RESIDUE MODRES 6ZUL SNM B 1 SER MODIFIED RESIDUE MODRES 6ZUL MLY B 25 LYS MODIFIED RESIDUE MODRES 6ZUL MLY B 34 LYS MODIFIED RESIDUE MODRES 6ZUL MLY B 83 LYS MODIFIED RESIDUE MODRES 6ZUL SNM C 1 SER MODIFIED RESIDUE MODRES 6ZUL MLY C 25 LYS MODIFIED RESIDUE MODRES 6ZUL MLY C 34 LYS MODIFIED RESIDUE MODRES 6ZUL MLY C 83 LYS MODIFIED RESIDUE MODRES 6ZUL SNM D 1 SER MODIFIED RESIDUE MODRES 6ZUL MLY D 25 LYS MODIFIED RESIDUE MODRES 6ZUL MLY D 34 LYS MODIFIED RESIDUE MODRES 6ZUL MLY D 83 LYS MODIFIED RESIDUE MODRES 6ZUL SNM E 1 SER MODIFIED RESIDUE MODRES 6ZUL MLY E 25 LYS MODIFIED RESIDUE MODRES 6ZUL MLY E 34 LYS MODIFIED RESIDUE MODRES 6ZUL MLY E 83 LYS MODIFIED RESIDUE MODRES 6ZUL SNM F 1 SER MODIFIED RESIDUE MODRES 6ZUL MLY F 25 LYS MODIFIED RESIDUE MODRES 6ZUL MLY F 34 LYS MODIFIED RESIDUE MODRES 6ZUL MLY F 83 LYS MODIFIED RESIDUE HET SNM A 1 8 HET MLY A 25 11 HET MLY A 34 11 HET MLY A 83 10 HET SNM B 1 8 HET MLY B 25 11 HET MLY B 34 11 HET MLY B 83 11 HET SNM C 1 8 HET MLY C 25 11 HET MLY C 34 11 HET MLY C 83 11 HET SNM D 1 8 HET MLY D 25 11 HET MLY D 34 11 HET MLY D 83 11 HET SNM E 1 8 HET MLY E 25 11 HET MLY E 34 11 HET MLY E 83 11 HET SNM F 1 8 HET MLY F 25 11 HET MLY F 34 11 HET MLY F 83 11 HET QQ7 A 101 126 HET GOL A 102 14 HET GOL A 103 14 HET ZN A 104 1 HET ZN A 105 1 HET QQ7 B 101 126 HET GOL B 102 14 HET GOL B 103 14 HET QQ7 C 101 126 HET GOL C 102 14 HET GOL C 103 14 HET NA C 104 1 HET NA C 105 1 HET QQ7 D 101 126 HET NA D 102 1 HET GOL D 103 14 HET GOL D 104 14 HET NA D 105 1 HET QQ7 E 101 126 HET GOL E 102 14 HET GOL E 103 14 HET QQ7 F 101 126 HET GOL F 102 14 HET GOL F 103 14 HETNAM SNM N,N-DIMETHYL-L-SERINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM QQ7 CUCURBIT[7]URIL HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 SNM 6(C5 H11 N O3) FORMUL 1 MLY 18(C8 H18 N2 O2) FORMUL 7 QQ7 6(C42 H42 N28 O14) FORMUL 8 GOL 12(C3 H8 O3) FORMUL 10 ZN 2(ZN 2+) FORMUL 18 NA 4(NA 1+) FORMUL 31 HOH *594(H2 O) SHEET 1 AA1 4 GLN A 4 TRP A 10 0 SHEET 2 AA1 4 SER A 15 ASN A 22 -1 O ALA A 21 N GLN A 4 SHEET 3 AA1 4 MLY A 25 TRP A 31 -1 O ARG A 29 N VAL A 18 SHEET 4 AA1 4 TRP A 36 PRO A 44 -1 O TYR A 37 N CYS A 30 SHEET 1 AA2 4 ASN A 47 VAL A 55 0 SHEET 2 AA2 4 ALA A 58 THR A 67 -1 O ARG A 62 N THR A 51 SHEET 3 AA2 4 THR A 70 TRP A 76 -1 O THR A 72 N ALA A 65 SHEET 4 AA2 4 TRP A 81 THR A 82 -1 O THR A 82 N CYS A 75 SHEET 1 AA3 4 GLN B 4 TRP B 10 0 SHEET 2 AA3 4 SER B 15 ASN B 22 -1 O ALA B 21 N GLN B 4 SHEET 3 AA3 4 MLY B 25 TRP B 31 -1 O MLY B 25 N ASN B 22 SHEET 4 AA3 4 TRP B 36 PRO B 44 -1 O TYR B 37 N CYS B 30 SHEET 1 AA4 4 ASN B 47 VAL B 55 0 SHEET 2 AA4 4 ALA B 58 THR B 67 -1 O TYR B 64 N SER B 49 SHEET 3 AA4 4 THR B 70 TRP B 76 -1 O THR B 72 N ALA B 65 SHEET 4 AA4 4 TRP B 81 MLY B 83 -1 O THR B 82 N CYS B 75 SHEET 1 AA5 4 GLN C 4 TRP C 10 0 SHEET 2 AA5 4 SER C 15 ASN C 22 -1 O ALA C 21 N GLN C 4 SHEET 3 AA5 4 MLY C 25 TRP C 31 -1 O THR C 27 N THR C 20 SHEET 4 AA5 4 TRP C 36 PRO C 44 -1 O TYR C 37 N CYS C 30 SHEET 1 AA6 4 ASN C 47 VAL C 55 0 SHEET 2 AA6 4 ALA C 58 THR C 67 -1 O TYR C 64 N SER C 49 SHEET 3 AA6 4 THR C 70 TRP C 76 -1 O THR C 72 N ALA C 65 SHEET 4 AA6 4 TRP C 81 MLY C 83 -1 O THR C 82 N CYS C 75 SHEET 1 AA7 4 GLN D 4 TRP D 10 0 SHEET 2 AA7 4 SER D 15 ASN D 22 -1 O TYR D 19 N ALA D 6 SHEET 3 AA7 4 MLY D 25 TRP D 31 -1 O ARG D 29 N VAL D 18 SHEET 4 AA7 4 TRP D 36 PRO D 44 -1 O TYR D 37 N CYS D 30 SHEET 1 AA8 4 ASN D 47 VAL D 55 0 SHEET 2 AA8 4 ALA D 58 THR D 67 -1 O ARG D 62 N THR D 51 SHEET 3 AA8 4 THR D 70 TRP D 76 -1 O THR D 72 N ALA D 65 SHEET 4 AA8 4 TRP D 81 MLY D 83 -1 O THR D 82 N CYS D 75 SHEET 1 AA9 4 GLN E 4 TRP E 10 0 SHEET 2 AA9 4 SER E 15 ASN E 22 -1 O ALA E 21 N GLN E 4 SHEET 3 AA9 4 MLY E 25 TRP E 31 -1 O MLY E 25 N ASN E 22 SHEET 4 AA9 4 TRP E 36 PRO E 44 -1 O TYR E 37 N CYS E 30 SHEET 1 AB1 4 ASN E 47 VAL E 55 0 SHEET 2 AB1 4 ALA E 58 THR E 67 -1 O ARG E 62 N THR E 51 SHEET 3 AB1 4 THR E 70 TRP E 76 -1 O THR E 72 N ALA E 65 SHEET 4 AB1 4 TRP E 81 MLY E 83 -1 O THR E 82 N CYS E 75 SHEET 1 AB2 4 GLN F 4 TRP F 10 0 SHEET 2 AB2 4 SER F 15 ASN F 22 -1 O ALA F 21 N GLN F 4 SHEET 3 AB2 4 MLY F 25 TRP F 31 -1 O MLY F 25 N ASN F 22 SHEET 4 AB2 4 TRP F 36 PRO F 44 -1 O TYR F 37 N CYS F 30 SHEET 1 AB3 4 ASN F 47 VAL F 55 0 SHEET 2 AB3 4 ALA F 58 THR F 67 -1 O ARG F 62 N THR F 51 SHEET 3 AB3 4 THR F 70 TRP F 76 -1 O THR F 72 N ALA F 65 SHEET 4 AB3 4 TRP F 81 MLY F 83 -1 O THR F 82 N CYS F 75 LINK C SNM A 1 N SER A 2 1555 1555 1.32 LINK C GLY A 24 N MLY A 25 1555 1555 1.33 LINK C MLY A 25 N ILE A 26 1555 1555 1.32 LINK C GLY A 33 N MLY A 34 1555 1555 1.33 LINK C MLY A 34 N GLY A 35 1555 1555 1.33 LINK C MLY A 83 N GLY A 84 1555 1555 1.33 LINK C SNM B 1 N SER B 2 1555 1555 1.33 LINK C GLY B 24 N MLY B 25 1555 1555 1.33 LINK C MLY B 25 N ILE B 26 1555 1555 1.33 LINK C GLY B 33 N MLY B 34 1555 1555 1.33 LINK C MLY B 34 N GLY B 35 1555 1555 1.32 LINK C THR B 82 N MLY B 83 1555 1555 1.33 LINK C MLY B 83 N GLY B 84 1555 1555 1.33 LINK C SNM C 1 N SER C 2 1555 1555 1.33 LINK C GLY C 24 N MLY C 25 1555 1555 1.33 LINK C MLY C 25 N ILE C 26 1555 1555 1.32 LINK C GLY C 33 N MLY C 34 1555 1555 1.33 LINK C MLY C 34 N GLY C 35 1555 1555 1.32 LINK C THR C 82 N MLY C 83 1555 1555 1.33 LINK C MLY C 83 N GLY C 84 1555 1555 1.33 LINK C SNM D 1 N SER D 2 1555 1555 1.33 LINK C GLY D 24 N MLY D 25 1555 1555 1.33 LINK C MLY D 25 N ILE D 26 1555 1555 1.33 LINK C GLY D 33 N MLY D 34 1555 1555 1.33 LINK C MLY D 34 N GLY D 35 1555 1555 1.32 LINK C THR D 82 N MLY D 83 1555 1555 1.33 LINK C MLY D 83 N GLY D 84 1555 1555 1.33 LINK C SNM E 1 N SER E 2 1555 1555 1.32 LINK C GLY E 24 N MLY E 25 1555 1555 1.33 LINK C MLY E 25 N ILE E 26 1555 1555 1.33 LINK C GLY E 33 N MLY E 34 1555 1555 1.33 LINK C MLY E 34 N GLY E 35 1555 1555 1.33 LINK C THR E 82 N MLY E 83 1555 1555 1.33 LINK C MLY E 83 N GLY E 84 1555 1555 1.33 LINK C SNM F 1 N SER F 2 1555 1555 1.33 LINK C GLY F 24 N MLY F 25 1555 1555 1.33 LINK C MLY F 25 N ILE F 26 1555 1555 1.33 LINK C GLY F 33 N MLY F 34 1555 1555 1.33 LINK C MLY F 34 N GLY F 35 1555 1555 1.32 LINK C THR F 82 N MLY F 83 1555 1555 1.32 LINK C MLY F 83 N GLY F 84 1555 1555 1.33 LINK N SNM A 1 ZN ZN A 105 1555 1555 2.30 LINK OG SNM A 1 ZN ZN A 105 1555 1555 2.33 LINK NE2 HIS A 60 ZN ZN A 104 1555 1555 2.00 LINK O12 QQ7 A 101 NA NA C 104 1555 1455 2.33 LINK O QQ7 A 101 NA NA C 104 1555 1455 2.60 LINK O06 QQ7 A 101 NA NA C 105 1555 1455 2.71 LINK O QQ7 A 101 NA NA C 105 1555 1455 2.71 LINK ZN ZN A 104 N SNM D 1 1556 1555 2.46 LINK ZN ZN A 105 NE2 HIS F 60 1555 1555 1.92 LINK O06 QQ7 B 101 NA NA D 102 1555 1455 2.63 LINK O QQ7 B 101 NA NA D 102 1555 1455 2.34 LINK O04 QQ7 B 101 NA NA D 105 1555 1455 2.78 LINK O06 QQ7 B 101 NA NA D 105 1555 1455 2.60 LINK O07 QQ7 C 101 NA NA C 104 1555 1555 2.66 LINK O10 QQ7 C 101 NA NA C 104 1555 1555 2.37 LINK O02 QQ7 C 101 NA NA C 105 1555 1555 2.65 LINK O07 QQ7 C 101 NA NA C 105 1555 1555 2.61 LINK NA NA C 104 O QQ7 E 101 1555 1645 2.66 LINK NA NA C 104 O12 QQ7 E 101 1555 1645 2.37 LINK NA NA C 105 O06 QQ7 E 101 1555 1645 2.72 LINK NA NA C 105 O QQ7 E 101 1555 1645 2.58 LINK O07 QQ7 D 101 NA NA D 102 1555 1555 2.68 LINK O10 QQ7 D 101 NA NA D 102 1555 1555 2.36 LINK O02 QQ7 D 101 NA NA D 105 1555 1555 2.63 LINK O07 QQ7 D 101 NA NA D 105 1555 1555 2.59 LINK NA NA D 102 O02 QQ7 F 101 1555 1645 2.66 LINK NA NA D 102 O07 QQ7 F 101 1555 1645 2.33 LINK NA NA D 105 O02 QQ7 F 101 1555 1645 2.53 LINK NA NA D 105 O03 QQ7 F 101 1555 1645 2.69 CISPEP 1 VAL A 13 PRO A 14 0 -5.13 CISPEP 2 VAL B 13 PRO B 14 0 -4.81 CISPEP 3 VAL C 13 PRO C 14 0 -5.60 CISPEP 4 VAL D 13 PRO D 14 0 -6.03 CISPEP 5 VAL E 13 PRO E 14 0 -6.29 CISPEP 6 VAL F 13 PRO F 14 0 -5.37 CRYST1 50.358 50.356 71.513 84.17 82.46 60.04 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019858 -0.011447 -0.002153 0.00000 SCALE2 0.000000 0.022922 -0.000960 0.00000 SCALE3 0.000000 0.000000 0.014118 0.00000 HETATM 1 N SNM A 1 -18.232 22.755 17.676 1.00 34.47 N ANISOU 1 N SNM A 1 4324 4365 4406 -13 75 92 N HETATM 2 CA SNM A 1 -17.955 21.584 16.823 1.00 34.54 C ANISOU 2 CA SNM A 1 4332 4372 4418 -15 64 92 C HETATM 3 CB SNM A 1 -18.124 20.274 17.590 1.00 36.88 C ANISOU 3 CB SNM A 1 4628 4669 4715 -15 58 97 C HETATM 4 OG SNM A 1 -16.986 20.103 18.439 1.00 28.77 O ANISOU 4 OG SNM A 1 3606 3645 3681 -15 57 90 O HETATM 5 C SNM A 1 -18.875 21.575 15.641 1.00 26.54 C ANISOU 5 C SNM A 1 3315 3356 3412 -15 61 98 C HETATM 6 O SNM A 1 -20.111 21.473 15.804 1.00 24.64 O ANISOU 6 O SNM A 1 3071 3114 3177 -15 63 107 O HETATM 7 C1 SNM A 1 -18.059 24.006 16.915 1.00 43.37 C ANISOU 7 C1 SNM A 1 5453 5492 5534 -13 81 88 C HETATM 8 C2 SNM A 1 -19.613 22.673 18.179 1.00 37.98 C ANISOU 8 C2 SNM A 1 4765 4808 4856 -13 79 103 C