HEADER SIGNALING PROTEIN 23-JUL-20 6ZUV TITLE NOTUM FRAGMENT 286 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNOTUM; COMPND 5 EC: 3.1.1.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NOTUM, OK/SW-CL.30; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS WNT NOTUM INHIBITOR COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,E.Y.JONES REVDAT 4 06-NOV-24 6ZUV 1 REMARK REVDAT 3 31-JAN-24 6ZUV 1 REMARK REVDAT 2 25-NOV-20 6ZUV 1 JRNL REVDAT 1 11-NOV-20 6ZUV 0 JRNL AUTH W.MAHY,N.J.WILLIS,Y.ZHAO,H.L.WOODWARD,F.SVENSSON,J.SIPTHORP, JRNL AUTH 2 L.VECCHIA,R.R.RUZA,J.HILLIER,S.KJAER,S.FREW,A.MONAGHAN, JRNL AUTH 3 M.BICTASH,P.C.SALINAS,P.WHITING,J.P.VINCENT,E.Y.JONES, JRNL AUTH 4 P.V.FISH JRNL TITL 5-PHENYL-1,3,4-OXADIAZOL-2(3 H )-ONES ARE POTENT INHIBITORS JRNL TITL 2 OF NOTUM CARBOXYLESTERASE ACTIVITY IDENTIFIED BY THE JRNL TITL 3 OPTIMIZATION OF A CRYSTALLOGRAPHIC FRAGMENT SCREENING HIT. JRNL REF J.MED.CHEM. V. 63 12942 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 33124429 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01391 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 51471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.3300 - 4.0400 1.00 2941 161 0.1888 0.2362 REMARK 3 2 4.0400 - 3.2000 1.00 2828 138 0.1806 0.2388 REMARK 3 3 3.2000 - 2.8000 1.00 2782 148 0.1963 0.2468 REMARK 3 4 2.8000 - 2.5400 1.00 2779 130 0.1972 0.2566 REMARK 3 5 2.5400 - 2.3600 1.00 2767 131 0.1967 0.2206 REMARK 3 6 2.3600 - 2.2200 1.00 2715 168 0.1942 0.2383 REMARK 3 7 2.2200 - 2.1100 1.00 2747 136 0.1873 0.2458 REMARK 3 8 2.1100 - 2.0200 1.00 2712 133 0.2011 0.2617 REMARK 3 9 2.0200 - 1.9400 0.99 2739 136 0.2119 0.2433 REMARK 3 10 1.9400 - 1.8700 0.99 2691 152 0.2232 0.3090 REMARK 3 11 1.8700 - 1.8200 0.99 2701 135 0.2503 0.2773 REMARK 3 12 1.8200 - 1.7600 1.00 2708 147 0.2655 0.3067 REMARK 3 13 1.7600 - 1.7200 0.99 2665 153 0.2975 0.3415 REMARK 3 14 1.7200 - 1.6800 0.99 2689 141 0.3028 0.3198 REMARK 3 15 1.6800 - 1.6400 0.98 2655 126 0.3217 0.3705 REMARK 3 16 1.6400 - 1.6000 0.97 2626 136 0.3410 0.3850 REMARK 3 17 1.6000 - 1.5700 0.97 2649 120 0.3622 0.3958 REMARK 3 18 1.5700 - 1.5400 0.94 2555 131 0.3685 0.4009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4384 10.4868 -0.4075 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.1242 REMARK 3 T33: 0.1769 T12: -0.0018 REMARK 3 T13: -0.0194 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.0405 L22: 1.2916 REMARK 3 L33: 2.3049 L12: 0.1100 REMARK 3 L13: -0.5302 L23: 0.4161 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.0360 S13: 0.1367 REMARK 3 S21: 0.0440 S22: 0.0003 S23: 0.0022 REMARK 3 S31: -0.2151 S32: 0.0156 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6587 -2.0457 -1.6275 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1359 REMARK 3 T33: 0.1292 T12: 0.0013 REMARK 3 T13: 0.0128 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.6012 L22: 2.1258 REMARK 3 L33: 0.2526 L12: -0.2417 REMARK 3 L13: -0.0827 L23: -0.1335 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: -0.0228 S13: 0.0201 REMARK 3 S21: 0.1755 S22: 0.0185 S23: 0.1125 REMARK 3 S31: -0.1303 S32: -0.0903 S33: -0.0104 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7338 -2.0743 4.7566 REMARK 3 T TENSOR REMARK 3 T11: 0.1345 T22: 0.1668 REMARK 3 T33: 0.1867 T12: -0.0070 REMARK 3 T13: 0.0379 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 4.6626 L22: 5.5618 REMARK 3 L33: 2.9266 L12: 2.2534 REMARK 3 L13: 1.3872 L23: 2.5336 REMARK 3 S TENSOR REMARK 3 S11: 0.1374 S12: -0.2303 S13: 0.2665 REMARK 3 S21: 0.0869 S22: -0.2490 S23: 0.3229 REMARK 3 S31: -0.1248 S32: -0.1953 S33: 0.0530 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3790 -14.3361 -5.6032 REMARK 3 T TENSOR REMARK 3 T11: 0.1484 T22: 0.1606 REMARK 3 T33: 0.1937 T12: -0.0027 REMARK 3 T13: 0.0129 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.9139 L22: 1.5686 REMARK 3 L33: 1.7706 L12: -0.1037 REMARK 3 L13: -0.4826 L23: -0.8949 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: -0.0134 S13: -0.1190 REMARK 3 S21: -0.0766 S22: -0.0285 S23: -0.1329 REMARK 3 S31: 0.1250 S32: 0.1248 S33: 0.1013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52038 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 79.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6TR5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULPHATE 0.1 M SODIUM REMARK 280 CITRATE, PH4.2, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.33650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.50050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.14200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.50050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.33650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.14200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 ALA A 82 REMARK 465 GLN A 83 REMARK 465 GLN A 84 REMARK 465 LEU A 85 REMARK 465 ASN A 86 REMARK 465 GLU A 87 REMARK 465 GLN A 354 REMARK 465 ASP A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 LYS A 423 REMARK 465 ALA A 424 REMARK 465 SER A 425 REMARK 465 LYS A 426 REMARK 465 THR A 427 REMARK 465 GLY A 452 REMARK 465 THR A 453 REMARK 465 LYS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 296 O HOH A 601 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 167 OG1 THR A 282 2554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 305 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG A 329 CD - NE - CZ ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 329 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 128 -140.79 53.18 REMARK 500 MET A 143 43.80 -141.64 REMARK 500 MET A 147 -1.66 -143.42 REMARK 500 SER A 148 147.46 -171.30 REMARK 500 ALA A 191 57.31 -145.26 REMARK 500 ALA A 191 56.58 -145.26 REMARK 500 SER A 232 -126.80 61.43 REMARK 500 CYS A 279 91.20 -64.76 REMARK 500 GLN A 311 -178.90 72.10 REMARK 500 VAL A 356 -179.72 -57.29 REMARK 500 GLU A 390 163.38 64.39 REMARK 500 ILE A 391 -33.74 -163.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 329 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 6ZUV A 81 451 UNP Q6P988 NOTUM_HUMAN 81 451 SEQADV 6ZUV GLU A 78 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV THR A 79 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV GLY A 80 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV SER A 330 UNP Q6P988 CYS 330 ENGINEERED MUTATION SEQADV 6ZUV GLY A 452 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV THR A 453 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV LYS A 454 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV HIS A 455 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV HIS A 456 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV HIS A 457 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV HIS A 458 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV HIS A 459 UNP Q6P988 EXPRESSION TAG SEQADV 6ZUV HIS A 460 UNP Q6P988 EXPRESSION TAG SEQRES 1 A 383 GLU THR GLY SER ALA GLN GLN LEU ASN GLU ASP LEU ARG SEQRES 2 A 383 LEU HIS LEU LEU LEU ASN THR SER VAL THR CYS ASN ASP SEQRES 3 A 383 GLY SER PRO ALA GLY TYR TYR LEU LYS GLU SER ARG GLY SEQRES 4 A 383 SER ARG ARG TRP LEU LEU PHE LEU GLU GLY GLY TRP TYR SEQRES 5 A 383 CYS PHE ASN ARG GLU ASN CYS ASP SER ARG TYR ASP THR SEQRES 6 A 383 MET ARG ARG LEU MET SER SER ARG ASP TRP PRO ARG THR SEQRES 7 A 383 ARG THR GLY THR GLY ILE LEU SER SER GLN PRO GLU GLU SEQRES 8 A 383 ASN PRO TYR TRP TRP ASN ALA ASN MET VAL PHE ILE PRO SEQRES 9 A 383 TYR CYS SER SER ASP VAL TRP SER GLY ALA SER SER LYS SEQRES 10 A 383 SER GLU LYS ASN GLU TYR ALA PHE MET GLY ALA LEU ILE SEQRES 11 A 383 ILE GLN GLU VAL VAL ARG GLU LEU LEU GLY ARG GLY LEU SEQRES 12 A 383 SER GLY ALA LYS VAL LEU LEU LEU ALA GLY SER SER ALA SEQRES 13 A 383 GLY GLY THR GLY VAL LEU LEU ASN VAL ASP ARG VAL ALA SEQRES 14 A 383 GLU GLN LEU GLU LYS LEU GLY TYR PRO ALA ILE GLN VAL SEQRES 15 A 383 ARG GLY LEU ALA ASP SER GLY TRP PHE LEU ASP ASN LYS SEQRES 16 A 383 GLN TYR ARG HIS THR ASP CYS VAL ASP THR ILE THR CYS SEQRES 17 A 383 ALA PRO THR GLU ALA ILE ARG ARG GLY ILE ARG TYR TRP SEQRES 18 A 383 ASN GLY VAL VAL PRO GLU ARG CYS ARG ARG GLN PHE GLN SEQRES 19 A 383 GLU GLY GLU GLU TRP ASN CYS PHE PHE GLY TYR LYS VAL SEQRES 20 A 383 TYR PRO THR LEU ARG SER PRO VAL PHE VAL VAL GLN TRP SEQRES 21 A 383 LEU PHE ASP GLU ALA GLN LEU THR VAL ASP ASN VAL HIS SEQRES 22 A 383 LEU THR GLY GLN PRO VAL GLN GLU GLY LEU ARG LEU TYR SEQRES 23 A 383 ILE GLN ASN LEU GLY ARG GLU LEU ARG HIS THR LEU LYS SEQRES 24 A 383 ASP VAL PRO ALA SER PHE ALA PRO ALA CYS LEU SER HIS SEQRES 25 A 383 GLU ILE ILE ILE ARG SER HIS TRP THR ASP VAL GLN VAL SEQRES 26 A 383 LYS GLY THR SER LEU PRO ARG ALA LEU HIS CYS TRP ASP SEQRES 27 A 383 ARG SER LEU HIS ASP SER HIS LYS ALA SER LYS THR PRO SEQRES 28 A 383 LEU LYS GLY CYS PRO VAL HIS LEU VAL ASP SER CYS PRO SEQRES 29 A 383 TRP PRO HIS CYS ASN PRO SER CYS PRO THR GLY THR LYS SEQRES 30 A 383 HIS HIS HIS HIS HIS HIS HET NAG A 501 14 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 10 HET B1J A 511 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM B1J [1-(4-CHLOROPHENYL)-1,2,3-TRIAZOL-4-YL]METHANOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 EDO 3(C2 H6 O2) FORMUL 12 B1J C9 H8 CL N3 O FORMUL 13 HOH *133(H2 O) HELIX 1 AA1 ASN A 132 MET A 143 1 12 HELIX 2 AA2 ARG A 144 MET A 147 5 4 HELIX 3 AA3 THR A 159 SER A 163 5 5 HELIX 4 AA4 MET A 203 GLY A 217 1 15 HELIX 5 AA5 ARG A 218 ALA A 223 5 6 HELIX 6 AA6 SER A 232 LEU A 252 1 21 HELIX 7 AA7 ASP A 281 CYS A 285 5 5 HELIX 8 AA8 ALA A 286 ASN A 299 1 14 HELIX 9 AA9 PRO A 303 GLN A 311 1 9 HELIX 10 AB1 GLU A 314 PHE A 319 5 6 HELIX 11 AB2 PHE A 320 TYR A 325 1 6 HELIX 12 AB3 PRO A 326 LEU A 328 5 3 HELIX 13 AB4 GLU A 341 ASP A 347 1 7 HELIX 14 AB5 GLN A 357 LEU A 375 1 19 HELIX 15 AB6 LEU A 407 LEU A 418 1 12 SHEET 1 AA110 THR A 155 ARG A 156 0 SHEET 2 AA110 LEU A 89 LEU A 93 -1 N LEU A 89 O ARG A 156 SHEET 3 AA110 GLY A 108 LYS A 112 -1 O TYR A 109 N HIS A 92 SHEET 4 AA110 ASN A 176 ILE A 180 -1 O PHE A 179 N TYR A 110 SHEET 5 AA110 ARG A 119 LEU A 124 1 N PHE A 123 O ILE A 180 SHEET 6 AA110 VAL A 225 SER A 231 1 O LEU A 227 N TRP A 120 SHEET 7 AA110 GLN A 258 ASP A 264 1 O ARG A 260 N LEU A 228 SHEET 8 AA110 VAL A 332 VAL A 335 1 O VAL A 335 N ALA A 263 SHEET 9 AA110 SER A 381 ALA A 383 1 O PHE A 382 N VAL A 334 SHEET 10 AA110 HIS A 435 VAL A 437 1 O LEU A 436 N ALA A 383 SHEET 1 AA2 2 PHE A 339 ASP A 340 0 SHEET 2 AA2 2 LEU A 387 SER A 388 1 O SER A 388 N PHE A 339 SHEET 1 AA3 2 GLN A 401 VAL A 402 0 SHEET 2 AA3 2 THR A 405 SER A 406 -1 O THR A 405 N VAL A 402 SSBOND 1 CYS A 101 CYS A 183 1555 1555 2.03 SSBOND 2 CYS A 130 CYS A 136 1555 1555 2.03 SSBOND 3 CYS A 279 CYS A 285 1555 1555 2.04 SSBOND 4 CYS A 306 CYS A 318 1555 1555 2.06 SSBOND 5 CYS A 386 CYS A 449 1555 1555 2.02 SSBOND 6 CYS A 413 CYS A 432 1555 1555 2.04 SSBOND 7 CYS A 440 CYS A 445 1555 1555 2.03 LINK ND2 ASN A 96 C1 NAG A 501 1555 1555 1.44 CRYST1 60.673 72.284 79.001 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012658 0.00000