HEADER TRANSCRIPTION 23-JUL-20 6ZV0 TITLE TFIIS N-TERMINAL DOMAIN (TND) FROM HUMAN LEDGF/P75 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC4 AND SFRS1-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-7,DENSE FINE SPECKLES 70 KDA COMPND 5 PROTEIN,DFS 70,LENS EPITHELIUM-DERIVED GROWTH FACTOR,TRANSCRIPTIONAL COMPND 6 COACTIVATOR P75/P52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSIP1, DFS70, LEDGF, PSIP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHROMATIN READER, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR V.VEVERKA REVDAT 3 14-JUN-23 6ZV0 1 REMARK REVDAT 2 08-DEC-21 6ZV0 1 JRNL REVDAT 1 01-DEC-21 6ZV0 0 JRNL AUTH K.CERMAKOVA,J.DEMEULEMEESTER,V.LUX,M.NEDOMOVA,S.R.GOLDMAN, JRNL AUTH 2 E.A.SMITH,P.SRB,R.HEXNEROVA,M.FABRY,M.MADLIKOVA,M.HOREJSI, JRNL AUTH 3 J.DE RIJCK,Z.DEBYSER,K.ADELMAN,H.C.HODGES,V.VEVERKA JRNL TITL A UBIQUITOUS DISORDERED PROTEIN INTERACTION MODULE JRNL TITL 2 ORCHESTRATES TRANSCRIPTION ELONGATION. JRNL REF SCIENCE V. 374 1113 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 34822292 JRNL DOI 10.1126/SCIENCE.ABE2913 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, YASARA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), YASARA REMARK 3 (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292108118. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 225 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-13C; U-15N] LEDGF/P75, REMARK 210 25 MM [U-2H] TRIS, 200 MM SODIUM REMARK 210 CHLORIDE, 1 MM TCEP, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 18 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 48 ARG A 404 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 407 5.64 -64.94 REMARK 500 2 LYS A 407 2.08 -67.04 REMARK 500 4 THR A 346 82.92 54.26 REMARK 500 5 THR A 346 81.11 48.04 REMARK 500 5 LYS A 407 0.12 -64.63 REMARK 500 7 GLU A 345 179.82 63.06 REMARK 500 7 LYS A 407 3.62 -66.69 REMARK 500 8 SER A 344 176.10 64.77 REMARK 500 9 THR A 346 93.67 57.83 REMARK 500 9 ASP A 369 78.43 -113.14 REMARK 500 10 ALA A 343 20.64 -78.33 REMARK 500 10 LYS A 407 0.24 -62.51 REMARK 500 12 ASN A 341 41.32 -95.57 REMARK 500 12 GLU A 345 33.42 -76.68 REMARK 500 12 LYS A 407 -5.32 -59.32 REMARK 500 14 SER A 344 -173.32 58.50 REMARK 500 14 GLU A 345 -46.32 -150.13 REMARK 500 14 LYS A 407 2.13 -65.45 REMARK 500 15 THR A 346 27.62 -77.72 REMARK 500 15 LYS A 407 0.48 -65.35 REMARK 500 16 LYS A 407 2.97 -67.73 REMARK 500 17 ALA A 342 158.12 65.57 REMARK 500 17 ALA A 343 -134.25 49.48 REMARK 500 17 SER A 344 -31.74 68.08 REMARK 500 18 GLU A 345 -46.08 -159.62 REMARK 500 19 ALA A 343 152.31 69.80 REMARK 500 19 SER A 344 13.46 -145.92 REMARK 500 19 LYS A 407 1.56 -64.44 REMARK 500 20 ASN A 341 44.28 -95.75 REMARK 500 21 LYS A 407 4.88 -66.48 REMARK 500 22 ALA A 342 41.39 -79.29 REMARK 500 22 SER A 344 178.21 63.51 REMARK 500 22 LYS A 407 0.88 -66.65 REMARK 500 23 ALA A 342 -36.32 66.76 REMARK 500 23 LYS A 407 1.50 -66.92 REMARK 500 24 SER A 344 19.59 -140.46 REMARK 500 25 LYS A 407 1.28 -63.66 REMARK 500 27 SER A 344 53.62 -158.67 REMARK 500 28 GLU A 345 17.58 56.04 REMARK 500 28 LEU A 363 30.09 -94.43 REMARK 500 28 LYS A 407 1.04 -67.98 REMARK 500 29 LYS A 407 0.56 -64.33 REMARK 500 30 SER A 344 46.14 -96.10 REMARK 500 30 GLU A 345 -1.76 59.41 REMARK 500 31 LYS A 407 -9.79 -58.02 REMARK 500 32 ALA A 342 -137.69 61.70 REMARK 500 32 ALA A 343 45.42 -86.57 REMARK 500 33 GLU A 345 33.62 -89.60 REMARK 500 33 THR A 346 102.03 66.83 REMARK 500 33 HIS A 393 35.14 -98.00 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34537 RELATED DB: BMRB REMARK 900 TFIIS N-TERMINAL DOMAIN (TND) FROM HUMAN LEDGF/P75 DBREF 6ZV0 A 345 431 UNP O75475 PSIP1_HUMAN 345 431 SEQADV 6ZV0 SER A 340 UNP O75475 EXPRESSION TAG SEQADV 6ZV0 ASN A 341 UNP O75475 EXPRESSION TAG SEQADV 6ZV0 ALA A 342 UNP O75475 EXPRESSION TAG SEQADV 6ZV0 ALA A 343 UNP O75475 EXPRESSION TAG SEQADV 6ZV0 SER A 344 UNP O75475 EXPRESSION TAG SEQRES 1 A 92 SER ASN ALA ALA SER GLU THR SER MET ASP SER ARG LEU SEQRES 2 A 92 GLN ARG ILE HIS ALA GLU ILE LYS ASN SER LEU LYS ILE SEQRES 3 A 92 ASP ASN LEU ASP VAL ASN ARG CYS ILE GLU ALA LEU ASP SEQRES 4 A 92 GLU LEU ALA SER LEU GLN VAL THR MET GLN GLN ALA GLN SEQRES 5 A 92 LYS HIS THR GLU MET ILE THR THR LEU LYS LYS ILE ARG SEQRES 6 A 92 ARG PHE LYS VAL SER GLN VAL ILE MET GLU LYS SER THR SEQRES 7 A 92 MET LEU TYR ASN LYS PHE LYS ASN MET PHE LEU VAL GLY SEQRES 8 A 92 GLU HELIX 1 AA1 THR A 346 LEU A 363 1 18 HELIX 2 AA2 ASP A 369 LEU A 383 1 15 HELIX 3 AA3 THR A 386 HIS A 393 1 8 HELIX 4 AA4 HIS A 393 ARG A 404 1 12 HELIX 5 AA5 SER A 409 LEU A 428 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1