HEADER TRANSCRIPTION 23-JUL-20 6ZV3 TITLE TFIIS N-TERMINAL DOMAIN (TND) FROM HUMAN MED26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIVATOR-RECRUITED COFACTOR 70 KDA COMPONENT,ARC70,COFACTOR COMPND 5 REQUIRED FOR SP1 TRANSCRIPTIONAL ACTIVATION SUBUNIT 7,CRSP COMPLEX COMPND 6 SUBUNIT 7,MEDIATOR COMPLEX SUBUNIT 26,TRANSCRIPTIONAL COACTIVATOR COMPND 7 CRSP70; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MED26, ARC70, CRSP7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION ELONGATION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR V.VEVERKA REVDAT 4 19-JUN-24 6ZV3 1 REMARK REVDAT 3 14-JUN-23 6ZV3 1 REMARK REVDAT 2 08-DEC-21 6ZV3 1 JRNL REVDAT 1 01-DEC-21 6ZV3 0 JRNL AUTH K.CERMAKOVA,J.DEMEULEMEESTER,V.LUX,M.NEDOMOVA,S.R.GOLDMAN, JRNL AUTH 2 E.A.SMITH,P.SRB,R.HEXNEROVA,M.FABRY,M.MADLIKOVA,M.HOREJSI, JRNL AUTH 3 J.DE RIJCK,Z.DEBYSER,K.ADELMAN,H.C.HODGES,V.VEVERKA JRNL TITL A UBIQUITOUS DISORDERED PROTEIN INTERACTION MODULE JRNL TITL 2 ORCHESTRATES TRANSCRIPTION ELONGATION. JRNL REF SCIENCE V. 374 1113 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 34822292 JRNL DOI 10.1126/SCIENCE.ABE2913 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, YASARA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), YASARA REMARK 3 (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110262. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 225 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] MED26, 25 REMARK 210 MM [U-2H] TRIS, 200 MM SODIUM REMARK 210 CHLORIDE, 1 MM TCEP, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 14 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 14 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 18 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 18 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 19 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 22 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 22 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 22 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 24 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 24 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 26 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 27 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 27 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 29 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 29 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 30 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 30 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 30 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 31 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 33 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 33 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 33 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 33 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 34 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 34 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 35 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 36 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 37 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 38 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 38 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 39 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 40 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 41 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 41 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 43 ARG A 13 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 45 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 45 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 45 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 46 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 46 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 48 ARG A 15 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 48 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 49 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 49 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ALA A 4 18.72 54.60 REMARK 500 2 ALA A 88 -148.27 53.56 REMARK 500 3 PRO A 87 46.84 -80.85 REMARK 500 4 ALA A 88 -137.98 53.93 REMARK 500 7 MET A 2 -148.43 56.75 REMARK 500 7 ALA A 5 153.82 63.18 REMARK 500 7 ALA A 88 22.86 49.55 REMARK 500 9 ALA A 4 -39.61 -144.94 REMARK 500 9 ALA A 5 150.32 66.94 REMARK 500 10 ALA A 5 154.69 65.76 REMARK 500 12 THR A 3 -167.70 65.87 REMARK 500 12 ARG A 53 16.32 59.43 REMARK 500 12 GLU A 86 71.43 40.46 REMARK 500 13 MET A 2 -150.05 55.72 REMARK 500 14 ALA A 5 159.48 65.90 REMARK 500 16 GLU A 86 73.80 21.91 REMARK 500 17 GLU A 86 75.08 54.41 REMARK 500 17 ALA A 88 -149.84 55.67 REMARK 500 19 GLU A 86 71.47 45.19 REMARK 500 21 ALA A 88 -157.66 57.01 REMARK 500 22 MET A 2 75.25 62.64 REMARK 500 23 ALA A 88 -130.48 49.04 REMARK 500 24 ALA A 4 -84.38 -123.76 REMARK 500 24 ARG A 53 18.52 57.63 REMARK 500 25 GLU A 86 68.53 29.06 REMARK 500 27 GLU A 86 71.11 35.28 REMARK 500 28 GLU A 86 73.44 39.92 REMARK 500 29 ALA A 4 156.96 69.34 REMARK 500 29 ALA A 88 -171.21 59.34 REMARK 500 30 ALA A 4 -151.68 58.36 REMARK 500 31 ALA A 88 -154.28 52.42 REMARK 500 34 ALA A 88 -42.37 -141.52 REMARK 500 35 GLU A 86 61.25 34.11 REMARK 500 36 ALA A 4 167.58 66.07 REMARK 500 37 THR A 3 11.46 55.30 REMARK 500 37 ARG A 53 19.61 56.18 REMARK 500 37 ALA A 88 -157.22 62.14 REMARK 500 38 TYR A 42 78.27 -115.67 REMARK 500 39 ALA A 5 137.88 61.16 REMARK 500 39 GLU A 86 70.21 41.76 REMARK 500 39 PRO A 87 46.35 -80.17 REMARK 500 41 MET A 2 177.01 64.34 REMARK 500 41 ALA A 5 162.22 65.49 REMARK 500 42 ALA A 4 42.57 -150.66 REMARK 500 42 ALA A 5 167.51 63.64 REMARK 500 48 ALA A 4 -78.88 -150.37 REMARK 500 50 ALA A 4 145.02 67.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34540 RELATED DB: BMRB REMARK 900 TFIIS N-TERMINAL DOMAIN (TND) FROM HUMAN MED26 DBREF 6ZV3 A 2 88 UNP O95402 MED26_HUMAN 1 87 SEQADV 6ZV3 SER A 1 UNP O95402 EXPRESSION TAG SEQADV 6ZV3 GLY A 89 UNP O95402 EXPRESSION TAG SEQADV 6ZV3 SER A 90 UNP O95402 EXPRESSION TAG SEQRES 1 A 90 SER MET THR ALA ALA PRO ALA SER PRO GLN GLN ILE ARG SEQRES 2 A 90 ASP ARG LEU LEU GLN ALA ILE ASP PRO GLN SER ASN ILE SEQRES 3 A 90 ARG ASN MET VAL ALA VAL LEU GLU VAL ILE SER SER LEU SEQRES 4 A 90 GLU LYS TYR PRO ILE THR LYS GLU ALA LEU GLU GLU THR SEQRES 5 A 90 ARG LEU GLY LYS LEU ILE ASN ASP VAL ARG LYS LYS THR SEQRES 6 A 90 LYS ASN GLU GLU LEU ALA LYS ARG ALA LYS LYS LEU LEU SEQRES 7 A 90 ARG SER TRP GLN LYS LEU ILE GLU PRO ALA GLY SER HELIX 1 AA1 SER A 8 GLN A 18 1 11 HELIX 2 AA2 ASN A 28 TYR A 42 1 15 HELIX 3 AA3 THR A 45 ARG A 53 1 9 HELIX 4 AA4 ARG A 53 THR A 65 1 13 HELIX 5 AA5 ASN A 67 GLU A 86 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1