HEADER IMMUNE SYSTEM 24-JUL-20 6ZVF TITLE CRYSTAL STRUCTURE OF THE RECOMBINANT FAB FRAGMENT DERIVED FROM THE TITLE 2 HYBRIDOMA M3/38 IN COMPLEX WITH A HUMAN GALECTIN-3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERIC FAB M3/38 (L,H); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: BOTH IMMUNOGLOBULIN CHAINS (L, H) ARE LINKED BY A COMPND 6 DISULFIDE BOND (CYS219L TO CYS221H).; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CHIMERIC FAB M3/38 (L,H); COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: RESIDUES 222 - 227 REPRESENT AN AFFINITY TAG (HIS6- COMPND 12 TAG). BOTH IMMUNOGLOBULIN CHAINS (L, H) ARE LINKED BY A DISULFIDE COMPND 13 BOND (CYS219L TO CYS221H).; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: GALECTIN-3; COMPND 16 CHAIN: P; COMPND 17 SYNONYM: GAL-3,35 KDA LECTIN,CARBOHYDRATE-BINDING PROTEIN 35,CBP 35, COMPND 18 GALACTOSE-SPECIFIC LECTIN 3,GALACTOSIDE-BINDING PROTEIN,GALBP,IGE- COMPND 19 BINDING PROTEIN,L-31,LAMININ-BINDING PROTEIN,LECTIN L-29,MAC-2 COMPND 20 ANTIGEN; COMPND 21 ENGINEERED: YES; COMPND 22 OTHER_DETAILS: THE PEPTIDE QAPPGAYPG CARRIES AN ACETYL (ACE) GROUP AT COMPND 23 THE N-TERMINUS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_TAXID: 10116; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 8 ORGANISM_TAXID: 10116; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY, FAB FRAGMENT, PEPTIDE EPITOPE, PROTEIN ENGINEERING, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.SKERRA,A.EICHINGER REVDAT 2 31-JAN-24 6ZVF 1 REMARK REVDAT 1 14-APR-21 6ZVF 0 JRNL AUTH E.PEPLAU,F.DE ROSE,A.EICHINGER,S.REDER,M.MITTELHAUSER, JRNL AUTH 2 G.SCAFETTA,M.SCHWAIGER,W.A.WEBER,A.BARTOLAZZI, JRNL AUTH 3 C.D'ALESSANDRIA,A.SKERRA JRNL TITL EFFECTIVE RATIONAL HUMANIZATION OF A PASYLATED JRNL TITL 2 ANTI-GALECTIN-3 FAB FOR THE SENSITIVE PET IMAGING OF THYROID JRNL TITL 3 CANCER IN VIVO. JRNL REF SCI REP V. 11 7358 2021 JRNL REFN ESSN 2045-2322 JRNL PMID 33795750 JRNL DOI 10.1038/S41598-021-86641-0 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 32653 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1700 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : -2.05000 REMARK 3 B33 (A**2) : 3.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.385 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3522 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3190 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4802 ; 1.519 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7483 ; 1.257 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 7.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;34.095 ;24.022 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;15.053 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3933 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 675 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 105.333 44.083 89.093 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.1749 REMARK 3 T33: 0.0298 T12: 0.0048 REMARK 3 T13: 0.0149 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.0394 L22: 0.4960 REMARK 3 L33: 0.2733 L12: -0.0212 REMARK 3 L13: 0.0041 L23: 0.1450 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: 0.0212 S13: 0.0105 REMARK 3 S21: 0.0572 S22: -0.0087 S23: -0.0257 REMARK 3 S31: 0.0282 S32: 0.0225 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 221 REMARK 3 ORIGIN FOR THE GROUP (A): 87.595 41.978 90.978 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.1511 REMARK 3 T33: 0.0961 T12: -0.0012 REMARK 3 T13: 0.0278 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.1409 L22: 0.5849 REMARK 3 L33: 0.2487 L12: 0.0176 REMARK 3 L13: -0.1389 L23: 0.1889 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: 0.0225 S13: -0.0137 REMARK 3 S21: 0.0576 S22: -0.0506 S23: 0.1413 REMARK 3 S31: 0.0125 S32: -0.0176 S33: 0.0264 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 0 P 9 REMARK 3 ORIGIN FOR THE GROUP (A): 88.831 47.138 119.920 REMARK 3 T TENSOR REMARK 3 T11: 0.3284 T22: 0.2407 REMARK 3 T33: 0.1215 T12: -0.0008 REMARK 3 T13: 0.1428 T23: 0.0594 REMARK 3 L TENSOR REMARK 3 L11: 2.4615 L22: 2.2916 REMARK 3 L33: 3.6493 L12: -2.3635 REMARK 3 L13: 2.9924 L23: -2.8839 REMARK 3 S TENSOR REMARK 3 S11: -0.3005 S12: -0.2256 S13: 0.0937 REMARK 3 S21: 0.2280 S22: 0.1648 S23: -0.1384 REMARK 3 S31: -0.3019 S32: -0.2787 S33: 0.1357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6ZVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE-CRYSTAL REMARK 200 OPTICS : SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34354 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.661 REMARK 200 RESOLUTION RANGE LOW (A) : 78.719 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : 0.41100 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 3O2V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 4000, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.06700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.06700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.63500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER H 115 OG SER H 115 2757 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 51 -47.37 74.38 REMARK 500 SER L 67 -100.48 -143.41 REMARK 500 ALA L 91 33.17 -144.14 REMARK 500 GLU L 213 80.20 -156.46 REMARK 500 ASP H 146 68.85 71.15 REMARK 500 LYS H 228 -69.24 -23.59 REMARK 500 SER H 229 -152.89 74.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 6ZVF L 1 214 PDB 6ZVF 6ZVF 1 214 DBREF 6ZVF H 1 236 PDB 6ZVF 6ZVF 1 236 DBREF 6ZVF P 1 9 UNP P17931 LEG3_HUMAN 57 65 SEQADV 6ZVF ACE P 0 UNP P17931 ACETYLATION SEQRES 1 L 219 ASP VAL VAL MET THR GLN THR PRO VAL SER LEU SER LEU SEQRES 2 L 219 ALA ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS SER ASP GLY LYS THR TYR LEU SER SEQRES 4 L 219 TRP ILE LEU GLN ARG PRO GLY GLN SER PRO LYS GLY LEU SEQRES 5 L 219 ILE TYR LEU VAL SER LYS LEU ASP SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLU THR GLU PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS TRP GLN ALA THR HIS PHE PRO LEU THR PHE GLY SEQRES 9 L 219 SER GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 227 GLN ILE GLN LEU VAL GLN SER GLY PRO GLU LEU LYS LYS SEQRES 2 H 227 PRO GLY GLU SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 227 TYR THR PHE THR ASP TYR ALA ILE HIS TRP VAL LYS GLN SEQRES 4 H 227 ALA PRO GLY LYS GLY LEU LYS TRP MET GLY TRP ILE ASN SEQRES 5 H 227 THR TYR THR GLY LYS PRO ILE TYR ALA ASP ASP PHE LYS SEQRES 6 H 227 GLY ARG PHE VAL PHE SER LEU GLU ALA SER ALA SER THR SEQRES 7 H 227 ALA ASN LEU GLN ILE SER ASN LEU LYS ASN GLU ASP THR SEQRES 8 H 227 ALA THR TYR LEU CYS ALA ARG GLY THR MET MET ALA SER SEQRES 9 H 227 LEU ASP TYR TRP GLY GLN GLY VAL MET VAL THR VAL SER SEQRES 10 H 227 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 227 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 227 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 227 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 227 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 227 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 227 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 227 ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 18 H 227 HIS HIS HIS HIS HIS HIS SEQRES 1 P 10 ACE GLN ALA PRO PRO GLY ALA TYR PRO GLY HET ACE P 0 3 HETNAM ACE ACETYL GROUP FORMUL 3 ACE C2 H4 O FORMUL 4 HOH *201(H2 O) HELIX 1 AA1 GLU L 79 LEU L 83 5 5 HELIX 2 AA2 SER L 121 SER L 127 1 7 HELIX 3 AA3 LYS L 183 LYS L 188 1 6 HELIX 4 AA4 THR H 28 TYR H 32 5 5 HELIX 5 AA5 ASP H 61 LYS H 64 5 4 HELIX 6 AA6 ALA H 73 ALA H 75 5 3 HELIX 7 AA7 LYS H 83 THR H 87 5 5 HELIX 8 AA8 SER H 163 ALA H 165 5 3 HELIX 9 AA9 SER H 196 LEU H 198 5 3 HELIX 10 AB1 LYS H 213 ASN H 216 5 4 HELIX 11 AB2 PRO P 3 TYR P 7 5 5 SHEET 1 AA1 4 MET L 4 THR L 7 0 SHEET 2 AA1 4 ALA L 19 SER L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AA1 4 GLU L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 AA1 4 PHE L 62 GLY L 66 -1 N SER L 63 O LYS L 74 SHEET 1 AA2 6 SER L 10 ALA L 14 0 SHEET 2 AA2 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA2 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N SER L 34 O TRP L 89 SHEET 5 AA2 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA2 6 LYS L 53 LEU L 54 -1 O LYS L 53 N TYR L 49 SHEET 1 AA3 4 SER L 10 ALA L 14 0 SHEET 2 AA3 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA3 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AA5 4 ALA L 153 LEU L 154 0 SHEET 2 AA5 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA5 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 77 ILE H 82 -1 O LEU H 80 N ILE H 20 SHEET 4 AA6 4 PHE H 67 GLU H 72 -1 N SER H 70 O ASN H 79 SHEET 1 AA7 6 LEU H 11 LYS H 12 0 SHEET 2 AA7 6 VAL H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA7 6 ALA H 88 GLY H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA7 6 ALA H 33 GLN H 39 -1 N HIS H 35 O ALA H 93 SHEET 5 AA7 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA7 6 PRO H 57 TYR H 59 -1 O ILE H 58 N TRP H 50 SHEET 1 AA8 4 LEU H 11 LYS H 12 0 SHEET 2 AA8 4 VAL H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA8 4 ALA H 88 GLY H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA8 4 LEU H 100A TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 AA9 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 147 SHEET 4 AA9 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 AB1 4 THR H 133 SER H 134 0 SHEET 2 AB1 4 THR H 137 TYR H 147 -1 O THR H 137 N SER H 134 SHEET 3 AB1 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 147 SHEET 4 AB1 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 AB2 3 THR H 153 TRP H 157 0 SHEET 2 AB2 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 AB2 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.07 SSBOND 3 CYS L 214 CYS H 230 1555 1555 2.04 SSBOND 4 CYS H 22 CYS H 92 1555 1555 2.07 SSBOND 5 CYS H 142 CYS H 208 1555 1555 2.05 LINK C ACE P 0 N GLN P 1 1555 1555 1.34 CISPEP 1 THR L 7 PRO L 8 0 -7.66 CISPEP 2 PHE L 94 PRO L 95 0 -5.28 CISPEP 3 TYR L 140 PRO L 141 0 2.22 CISPEP 4 PHE H 148 PRO H 149 0 -6.84 CISPEP 5 GLU H 150 PRO H 151 0 -1.63 CRYST1 94.134 61.270 80.909 90.00 103.36 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010623 0.000000 0.002523 0.00000 SCALE2 0.000000 0.016321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012703 0.00000